Wall clock time and date at job start Sat Apr 11 2020 06:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.99781 * 2 1 4 4 C 1.54336 * 109.99326 * 238.95941 * 2 1 3 5 5 C 1.55155 * 103.01773 * 218.66346 * 4 2 1 6 6 H 1.09009 * 111.03080 * 153.39695 * 5 4 2 7 7 N 1.46490 * 111.00922 * 277.23146 * 5 4 2 8 8 C 1.36937 * 120.00245 * 198.65213 * 7 5 4 9 9 H 1.07995 * 119.99919 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99700 * 180.02562 * 8 7 5 11 11 N 1.31615 * 120.00606 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99783 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46804 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.47065 * 119.99970 * 12 10 8 15 15 H 1.48496 * 109.47227 * 239.99997 * 12 10 8 16 16 C 1.54906 * 101.58185 * 35.31153 * 5 4 2 17 17 N 1.47020 * 109.87996 * 121.09402 * 2 1 3 18 18 C 1.34778 * 125.64732 * 298.39334 * 17 2 1 19 19 O 1.21515 * 120.00296 * 3.22955 * 18 17 2 20 20 C 1.48159 * 119.99865 * 183.22504 * 18 17 2 21 21 C 1.39936 * 120.89567 * 334.94390 * 20 18 17 22 22 C 1.38054 * 119.14192 * 179.97438 * 21 20 18 23 23 N 1.31850 * 120.97977 * 359.97438 * 22 21 20 24 24 C 1.32231 * 121.97001 * 0.02562 * 23 22 21 25 25 N 1.39835 * 119.62523 * 180.02562 * 24 23 22 26 26 C 1.35842 * 126.09875 * 0.02562 * 25 24 23 27 27 C 1.35286 * 107.61051 * 180.02562 * 26 25 24 28 28 C 1.39945 * 107.97242 * 359.97438 * 27 26 25 29 29 N 1.30822 * 108.36961 * 0.02562 * 28 27 26 30 30 C 1.38918 * 120.75310 * 0.27397 * 24 23 22 31 31 H 1.08996 * 109.47344 * 300.36263 * 1 2 3 32 32 H 1.08999 * 109.47055 * 60.35921 * 1 2 3 33 33 H 1.09005 * 109.47054 * 180.35590 * 1 2 3 34 34 H 1.08996 * 110.84686 * 100.20117 * 4 2 1 35 35 H 1.09001 * 110.66471 * 337.04667 * 4 2 1 36 36 H 0.97005 * 119.99889 * 18.65137 * 7 5 4 37 37 H 0.96996 * 120.00462 * 179.97438 * 11 10 8 38 38 H 1.09002 * 110.36511 * 204.14434 * 16 5 4 39 39 H 1.09001 * 110.37389 * 81.82474 * 16 5 4 40 40 H 1.07999 * 120.43053 * 359.97120 * 21 20 18 41 41 H 1.08001 * 119.51463 * 179.97438 * 22 21 20 42 42 H 1.08002 * 126.19707 * 0.02562 * 26 25 24 43 43 H 1.08004 * 126.01210 * 180.02562 * 27 26 25 44 44 H 1.07998 * 125.81865 * 180.02562 * 28 27 26 45 45 H 1.08003 * 120.52918 * 179.73418 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7479 -1.2427 5 6 3.2864 -1.5183 -0.6913 6 1 3.4814 -2.4156 -1.2788 7 7 4.4699 -0.6562 -0.6462 8 6 5.7188 -1.2115 -0.5630 9 1 5.8313 -2.2851 -0.5311 10 6 6.8402 -0.3945 -0.5197 11 7 6.7032 0.9139 -0.5592 12 14 8.5440 -1.1521 -0.4070 13 1 8.4267 -2.6322 -0.3793 14 1 9.3473 -0.7416 -1.5866 15 1 9.2124 -0.6847 0.8339 16 6 2.8099 -1.8824 0.7370 17 7 2.0299 -0.7140 1.1839 18 6 1.8073 -0.3619 2.4657 19 8 1.0937 0.5883 2.7196 20 6 2.4325 -1.1335 3.5652 21 6 2.8035 -2.4706 3.3841 22 6 3.3839 -3.1552 4.4331 23 7 3.5915 -2.5675 5.5950 24 6 3.2572 -1.3066 5.8114 25 7 3.5003 -0.7321 7.0629 26 6 4.0677 -1.3507 8.1310 27 6 4.1229 -0.4534 9.1420 28 6 3.5750 0.7494 8.6821 29 7 3.2022 0.5841 7.4391 30 6 2.6626 -0.5476 4.8113 31 1 -0.3634 0.5194 0.8867 32 1 -0.3633 0.5082 -0.8932 33 1 -0.3633 -1.0277 0.0064 34 1 2.3598 -0.0451 -2.0191 35 1 1.3067 -1.4406 -1.6224 36 1 4.3689 0.3082 -0.6753 37 1 7.4867 1.4848 -0.5286 38 1 3.6655 -2.0411 1.3934 39 1 2.1801 -2.7717 0.7117 40 1 2.6380 -2.9606 2.4361 41 1 3.6723 -4.1875 4.3001 42 1 4.4122 -2.3737 8.1667 43 1 4.5206 -0.6335 10.1298 44 1 3.4767 1.6592 9.2557 45 1 2.3871 0.4807 4.9934 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989442517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:47 Heat of formation + Delta-G solvation = 101.378924 kcal Electronic energy + Delta-G solvation = -29488.444924 eV Core-core repulsion = 25508.221451 eV Total energy + Delta-G solvation = -3980.223473 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.66610 -41.78583 -40.54806 -38.83701 -35.84087 -35.09254 -33.98078 -33.18684 -32.52898 -31.35489 -30.48561 -30.14986 -27.09495 -26.22057 -25.65248 -25.12441 -23.60454 -22.27777 -21.92124 -21.44715 -20.52683 -19.38356 -19.12125 -18.28013 -17.59808 -17.19514 -16.95035 -16.63416 -16.48893 -16.24376 -15.73157 -15.53668 -15.36702 -15.17421 -14.92180 -14.71607 -14.49099 -14.42133 -14.20341 -13.73473 -13.52140 -13.35988 -13.18889 -13.12327 -12.92577 -12.74497 -12.25498 -12.17957 -12.04437 -11.87948 -11.65559 -11.56723 -11.52226 -11.40380 -11.15712 -11.06639 -10.75675 -10.28554 -9.76939 -9.38592 -8.98346 -7.94183 -5.22593 -0.62348 -0.36038 0.93178 1.01041 1.47002 1.47778 1.57000 1.59425 1.79209 1.87594 2.55751 2.61918 3.05725 3.26296 3.37484 3.39538 3.68386 3.70813 3.80540 3.87834 3.92201 4.01929 4.05684 4.13010 4.33009 4.36964 4.47327 4.50734 4.60375 4.67102 4.68541 4.71819 4.75801 4.83235 4.93415 4.99712 5.09032 5.18326 5.19904 5.24757 5.34412 5.45410 5.54925 5.56987 5.96068 6.26859 6.27110 6.39893 6.71120 6.92325 7.33729 8.09445 8.30062 9.29706 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008852 B = 0.003835 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3162.266543 B = 7299.925859 C = 9207.400386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.132 3.868 3 H 0.039 0.961 4 C -0.121 4.121 5 C 0.155 3.845 6 H 0.097 0.903 7 N -0.728 5.728 8 C -0.228 4.228 9 H 0.092 0.908 10 C -0.078 4.078 11 N -0.973 5.973 12 Si 0.963 3.037 13 H -0.253 1.253 14 H -0.298 1.298 15 H -0.307 1.307 16 C 0.059 3.941 17 N -0.585 5.585 18 C 0.564 3.436 19 O -0.576 6.576 20 C -0.067 4.067 21 C -0.154 4.154 22 C 0.142 3.858 23 N -0.498 5.498 24 C 0.353 3.647 25 N -0.344 5.344 26 C 0.064 3.936 27 C -0.256 4.256 28 C 0.065 3.935 29 N -0.335 5.335 30 C -0.137 4.137 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.120 0.880 36 H 0.368 0.632 37 H 0.246 0.754 38 H 0.076 0.924 39 H 0.115 0.885 40 H 0.188 0.812 41 H 0.223 0.777 42 H 0.202 0.798 43 H 0.193 0.807 44 H 0.227 0.773 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.450 -12.114 11.285 19.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.029 3.971 3 H 0.058 0.942 4 C -0.159 4.159 5 C 0.046 3.954 6 H 0.114 0.886 7 N -0.366 5.366 8 C -0.360 4.360 9 H 0.110 0.890 10 C -0.270 4.270 11 N -0.625 5.625 12 Si 0.794 3.206 13 H -0.177 1.177 14 H -0.226 1.226 15 H -0.235 1.235 16 C -0.065 4.065 17 N -0.316 5.316 18 C 0.352 3.648 19 O -0.457 6.457 20 C -0.078 4.078 21 C -0.174 4.174 22 C -0.016 4.016 23 N -0.212 5.212 24 C 0.127 3.873 25 N -0.122 5.122 26 C -0.076 4.076 27 C -0.284 4.284 28 C -0.123 4.123 29 N -0.154 5.154 30 C -0.161 4.161 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.138 0.862 36 H 0.199 0.801 37 H 0.055 0.945 38 H 0.094 0.906 39 H 0.133 0.867 40 H 0.205 0.795 41 H 0.240 0.760 42 H 0.219 0.781 43 H 0.210 0.790 44 H 0.243 0.757 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.850 -11.707 11.041 19.408 hybrid contribution 1.212 1.250 0.260 1.760 sum -9.639 -10.457 11.301 18.165 Atomic orbital electron populations 1.22045 0.93050 1.03141 1.02435 1.21649 0.95357 0.95303 0.84751 0.94227 1.22998 0.97751 1.00131 0.95052 1.21736 0.85955 0.94787 0.92955 0.88583 1.42607 1.01467 1.05126 1.87446 1.19736 0.84211 0.92491 1.39573 0.89010 1.25522 1.01536 0.95660 1.04275 1.69835 1.29002 1.03630 1.59994 0.85209 0.80699 0.78775 0.75953 1.17699 1.22597 1.23528 1.23890 0.95193 0.87871 0.99543 1.48363 1.50534 1.28783 1.03886 1.18003 0.80923 0.83506 0.82330 1.90721 1.40507 1.30515 1.83950 1.20185 0.98712 0.95930 0.92963 1.23271 0.97940 0.92877 1.03351 1.23366 0.92016 1.01483 0.84695 1.66847 1.19685 1.07942 1.26693 1.17592 0.96178 0.89768 0.83757 1.45901 1.48146 1.09619 1.08582 1.23479 0.96753 1.01355 0.86026 1.22121 1.11342 0.92468 1.02441 1.24907 0.94962 1.01217 0.91214 1.77548 1.25932 0.94425 1.17502 1.21452 1.00745 1.01670 0.92182 0.94092 0.89746 0.90569 0.90514 0.86224 0.80082 0.94525 0.90554 0.86721 0.79509 0.76028 0.78126 0.79014 0.75684 0.85369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.11 71.98 0.66 -3.09 16 2 C 0.13 4.02 3.47 45.35 0.16 4.18 16 3 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 4 C -0.12 -3.10 6.05 31.79 0.19 -2.91 16 5 C 0.16 4.80 3.69 46.38 0.17 4.97 16 6 H 0.10 2.61 8.13 -2.38 -0.02 2.59 16 7 N -0.73 -32.78 5.27 -316.39 -1.67 -34.44 16 8 C -0.23 -11.42 9.98 84.03 0.84 -10.58 16 9 H 0.09 4.18 7.83 -2.91 -0.02 4.16 16 10 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 11 N -0.97 -59.26 13.06 21.65 0.28 -58.98 16 12 Si 0.96 44.56 29.55 68.60 2.03 46.59 16 13 H -0.25 -10.49 7.11 99.48 0.71 -9.79 16 14 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 15 H -0.31 -14.82 7.11 99.48 0.71 -14.11 16 16 C 0.06 1.59 4.72 86.85 0.41 2.00 16 17 N -0.59 -18.83 3.06 -791.07 -2.42 -21.25 16 18 C 0.56 20.92 7.52 86.88 0.65 21.57 16 19 O -0.58 -25.18 15.62 -3.76 -0.06 -25.24 16 20 C -0.07 -2.20 5.75 -19.90 -0.11 -2.31 16 21 C -0.15 -3.66 8.06 22.64 0.18 -3.48 16 22 C 0.14 2.95 11.17 84.65 0.95 3.90 16 23 N -0.50 -13.27 9.83 -192.94 -1.90 -15.16 16 24 C 0.35 11.36 7.55 132.77 1.00 12.36 16 25 N -0.34 -10.52 3.81 -192.26 -0.73 -11.25 16 26 C 0.06 1.46 11.10 83.39 0.93 2.39 16 27 C -0.26 -4.69 10.80 22.00 0.24 -4.45 16 28 C 0.07 1.41 12.02 85.26 1.02 2.43 16 29 N -0.34 -10.46 11.83 -56.98 -0.67 -11.13 16 30 C -0.14 -4.90 9.27 22.76 0.21 -4.69 16 31 H 0.04 1.26 6.78 -2.39 -0.02 1.25 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.12 2.11 7.85 -2.39 -0.02 2.09 16 36 H 0.37 19.08 7.82 -92.70 -0.72 18.35 16 37 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 38 H 0.08 2.32 6.06 -2.39 -0.01 2.30 16 39 H 0.12 1.97 7.37 -2.39 -0.02 1.95 16 40 H 0.19 3.31 4.51 -2.91 -0.01 3.30 16 41 H 0.22 2.31 8.06 -2.91 -0.02 2.28 16 42 H 0.20 3.52 8.05 -2.91 -0.02 3.50 16 43 H 0.19 1.96 8.06 -2.91 -0.02 1.94 16 44 H 0.23 2.89 8.06 -2.91 -0.02 2.87 16 45 H 0.13 5.18 7.55 -2.91 -0.02 5.15 16 Total: -1.00 -80.10 376.11 3.13 -76.97 By element: Atomic # 1 Polarization: 35.13 SS G_CDS: 0.31 Total: 35.44 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 7.96 Total: 18.46 kcal Atomic # 7 Polarization: -145.11 SS G_CDS: -7.11 Total: -152.22 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.06 Total: -25.24 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -80.10 3.13 -76.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989442517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.352 kcal (2) G-P(sol) polarization free energy of solvation -80.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds