Wall clock time and date at job start Sat Apr 11 2020 06:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 110.41760 * 2 1 4 4 C 1.55129 * 110.34499 * 122.44775 * 2 1 3 5 5 C 1.55152 * 101.49200 * 156.05693 * 4 2 1 6 6 H 1.09005 * 110.71753 * 82.69185 * 5 4 2 7 7 N 1.46491 * 110.87469 * 205.90147 * 5 4 2 8 8 C 1.36940 * 120.00100 * 200.06585 * 7 5 4 9 9 H 1.08003 * 120.00009 * 359.97438 * 8 7 5 10 10 C 1.38810 * 120.00622 * 179.97438 * 8 7 5 11 11 N 1.31624 * 119.99601 * 359.97438 * 10 8 7 12 12 Si 1.86790 * 120.00549 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46924 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47269 * 119.99871 * 12 10 8 15 15 H 1.48506 * 109.47429 * 240.00316 * 12 10 8 16 16 C 1.54328 * 102.93932 * 324.33224 * 5 4 2 17 17 N 1.47020 * 107.27004 * 22.19395 * 16 5 4 18 18 C 1.34777 * 125.65038 * 181.02685 * 17 16 5 19 19 O 1.21574 * 120.00735 * 185.49349 * 18 17 16 20 20 C 1.47683 * 119.99784 * 5.48768 * 18 17 16 21 21 C 1.39703 * 120.07808 * 172.02826 * 20 18 17 22 22 C 1.37735 * 119.91270 * 179.97438 * 21 20 18 23 23 C 1.39022 * 120.08536 * 359.97438 * 22 21 20 24 24 N 1.39927 * 119.92100 * 179.97438 * 23 22 21 25 25 C 1.36352 * 127.11315 * 359.69018 * 24 23 22 26 26 N 1.30502 * 107.19435 * 180.25720 * 25 24 23 27 27 N 1.28544 * 109.92175 * 359.97438 * 26 25 24 28 28 C 1.30504 * 109.91411 * 0.02562 * 27 26 25 29 29 C 1.39031 * 120.16086 * 0.27792 * 23 22 21 30 30 C 1.37731 * 120.07809 * 359.48354 * 29 23 22 31 31 H 1.08998 * 109.47509 * 180.84174 * 1 2 3 32 32 H 1.09005 * 109.46738 * 300.83946 * 1 2 3 33 33 H 1.08995 * 109.46983 * 60.83523 * 1 2 3 34 34 H 1.09008 * 111.19117 * 37.95022 * 4 2 1 35 35 H 1.09005 * 110.93959 * 274.05564 * 4 2 1 36 36 H 0.96998 * 120.00257 * 20.05402 * 7 5 4 37 37 H 0.97001 * 120.00015 * 180.02562 * 11 10 8 38 38 H 1.08997 * 109.88247 * 262.77461 * 16 5 4 39 39 H 1.09005 * 110.01216 * 141.67746 * 16 5 4 40 40 H 1.07992 * 120.04155 * 0.02562 * 21 20 18 41 41 H 1.07999 * 119.95754 * 180.02562 * 22 21 20 42 42 H 1.07994 * 126.40653 * 0.23775 * 25 24 23 43 43 H 1.08005 * 126.39841 * 179.97438 * 28 27 26 44 44 H 1.07993 * 119.95931 * 179.74630 * 29 23 22 45 45 H 1.08005 * 120.04082 * 180.28000 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0693 -0.7804 1.2274 5 6 3.4797 -1.1974 0.7333 6 1 4.1930 -0.3850 0.8728 7 7 3.9359 -2.4089 1.4189 8 6 5.2701 -2.7158 1.4517 9 1 5.9859 -2.0648 0.9718 10 6 5.7026 -3.8634 2.1018 11 7 4.8303 -4.6565 2.6872 12 14 7.5224 -4.2824 2.1460 13 1 8.2885 -3.2384 1.4191 14 1 7.9824 -4.3426 3.5567 15 1 7.7431 -5.5996 1.4967 16 6 3.2524 -1.4725 -0.7682 17 7 2.0431 -0.7384 -1.1683 18 6 1.4971 -0.7362 -2.4005 19 8 0.5511 -0.0129 -2.6451 20 6 2.0482 -1.6125 -3.4538 21 6 1.3863 -1.7376 -4.6777 22 6 1.9035 -2.5554 -5.6579 23 6 3.0829 -3.2554 -5.4307 24 7 3.6051 -4.0857 -6.4287 25 6 3.0782 -4.3180 -7.6647 26 7 3.8740 -5.1550 -8.2723 27 7 4.8584 -5.4598 -7.5038 28 6 4.7430 -4.8340 -6.3643 29 6 3.7416 -3.1375 -4.2120 30 6 3.2329 -2.3178 -3.2290 31 1 -0.3634 -1.0275 0.0151 32 1 -0.3633 0.5269 0.8824 33 1 -0.3633 0.5008 -0.8973 34 1 1.4548 -1.6556 1.4390 35 1 2.1372 -0.1328 2.1017 36 1 3.2931 -2.9936 1.8498 37 1 5.1325 -5.4583 3.1418 38 1 3.1088 -2.5406 -0.9317 39 1 4.1075 -1.1208 -1.3455 40 1 0.4707 -1.1931 -4.8554 41 1 1.3926 -2.6523 -6.6045 42 1 2.1715 -3.8897 -8.0658 43 1 5.4221 -4.8973 -5.5268 44 1 4.6554 -3.6859 -4.0376 45 1 3.7475 -2.2231 -2.2841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989547650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:05 Heat of formation + Delta-G solvation = 123.369367 kcal Electronic energy + Delta-G solvation = -29093.858843 eV Core-core repulsion = 25114.588947 eV Total energy + Delta-G solvation = -3979.269896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.54027 -40.75420 -39.12753 -37.50361 -35.25825 -34.35449 -32.57204 -31.61157 -31.53401 -30.69638 -29.82630 -28.59914 -26.06940 -25.05973 -24.04279 -23.94416 -22.66567 -21.67865 -21.31511 -20.48994 -19.59289 -18.84422 -17.48878 -17.20362 -16.54543 -16.47806 -15.93060 -15.78608 -15.40684 -14.80966 -14.65460 -14.45995 -14.31591 -14.04197 -13.85720 -13.72281 -13.40464 -13.30612 -12.91010 -12.79377 -12.29154 -12.06362 -11.93594 -11.81965 -11.60083 -11.48836 -11.30433 -11.05850 -10.83413 -10.81337 -10.58291 -10.46003 -10.16078 -9.89670 -9.82111 -9.72824 -9.49102 -9.12669 -8.92229 -8.52029 -7.24848 -5.98853 -3.31119 0.12489 0.91137 1.60599 1.99860 2.54150 2.71654 2.96196 3.29579 3.35880 3.38605 3.54807 4.03010 4.13965 4.26505 4.31321 4.41022 4.44892 4.67796 4.84254 4.86487 4.93296 4.94908 5.08776 5.22264 5.27338 5.33728 5.39987 5.46035 5.51844 5.64314 5.67107 5.71281 5.76972 5.84775 5.92485 5.93978 5.99359 6.02665 6.20026 6.25422 6.31477 6.31910 6.52248 6.62759 6.67465 7.49553 7.57785 8.14361 8.18366 8.31269 9.30539 9.82904 10.17491 11.22692 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007800 B = 0.003726 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3588.901075 B = 7513.573438 C =10795.938330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.137 3.863 3 H 0.076 0.924 4 C -0.136 4.136 5 C 0.171 3.829 6 H 0.068 0.932 7 N -0.712 5.712 8 C -0.255 4.255 9 H 0.074 0.926 10 C -0.004 4.004 11 N -0.926 5.926 12 Si 0.906 3.094 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.290 1.290 16 C 0.058 3.942 17 N -0.601 5.601 18 C 0.571 3.429 19 O -0.544 6.544 20 C -0.128 4.128 21 C -0.036 4.036 22 C -0.141 4.141 23 C 0.145 3.855 24 N -0.429 5.429 25 C 0.158 3.842 26 N -0.292 5.292 27 N -0.292 5.292 28 C 0.165 3.835 29 C -0.132 4.132 30 C -0.091 4.091 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.388 0.612 37 H 0.258 0.742 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.147 0.853 41 H 0.137 0.863 42 H 0.222 0.778 43 H 0.225 0.775 44 H 0.140 0.860 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.897 7.187 -12.325 15.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.035 3.965 3 H 0.094 0.906 4 C -0.175 4.175 5 C 0.058 3.942 6 H 0.086 0.914 7 N -0.352 5.352 8 C -0.386 4.386 9 H 0.092 0.908 10 C -0.202 4.202 11 N -0.573 5.573 12 Si 0.737 3.263 13 H -0.204 1.204 14 H -0.217 1.217 15 H -0.217 1.217 16 C -0.068 4.068 17 N -0.333 5.333 18 C 0.361 3.639 19 O -0.424 6.424 20 C -0.131 4.131 21 C -0.055 4.055 22 C -0.160 4.160 23 C 0.052 3.948 24 N -0.116 5.116 25 C -0.128 4.128 26 N -0.129 5.129 27 N -0.129 5.129 28 C -0.121 4.121 29 C -0.151 4.151 30 C -0.109 4.109 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.222 0.778 37 H 0.068 0.932 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.165 0.835 41 H 0.155 0.845 42 H 0.239 0.761 43 H 0.241 0.759 44 H 0.158 0.842 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -6.613 6.563 -13.638 16.517 hybrid contribution 0.367 0.164 1.159 1.226 sum -6.246 6.727 -12.479 15.492 Atomic orbital electron populations 1.22146 0.94207 1.02590 1.03292 1.21948 0.94882 0.95425 0.84279 0.90585 1.23195 0.97592 1.00428 0.96306 1.21220 0.93365 0.91314 0.88280 0.91394 1.42396 1.06039 1.23698 1.63102 1.19273 0.83757 1.05480 1.30085 0.90810 1.24779 0.97785 0.97491 1.00111 1.69666 1.32685 1.15123 1.39805 0.86148 0.84636 0.78023 0.77496 1.20386 1.21671 1.21677 1.23836 0.85235 0.96921 1.00782 1.48502 1.28174 1.47925 1.08749 1.17774 0.82774 0.82266 0.81117 1.90702 1.28764 1.42192 1.80721 1.20102 0.97130 1.00472 0.95442 1.21111 0.99030 0.94800 0.90583 1.20747 0.95106 0.99153 1.01038 1.18003 0.95184 0.93456 0.88198 1.44323 1.20216 1.33967 1.13129 1.26787 1.02613 1.00470 0.82909 1.74241 1.01148 1.12725 1.24828 1.74263 1.17340 1.20858 1.00443 1.26910 0.90219 0.93841 1.01158 1.20941 1.01386 1.01447 0.91376 1.23057 0.94630 0.92081 1.01168 0.92700 0.92007 0.89902 0.90322 0.89905 0.77765 0.93240 0.89631 0.91223 0.83546 0.84511 0.76129 0.75860 0.84193 0.80032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 8.77 37.16 0.33 -1.73 16 2 C 0.14 1.78 3.75 -66.30 -0.25 1.53 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.14 -1.88 6.12 -24.47 -0.15 -2.03 16 5 C 0.17 2.77 3.58 -66.10 -0.24 2.53 16 6 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16 7 N -0.71 -15.18 5.18 -51.65 -0.27 -15.45 16 8 C -0.26 -6.16 9.98 -15.06 -0.15 -6.31 16 9 H 0.07 1.71 7.83 -52.48 -0.41 1.30 16 10 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 11 N -0.93 -25.54 13.06 55.49 0.72 -24.81 16 12 Si 0.91 20.37 29.55 -169.99 -5.02 15.35 16 13 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 14 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 16 C 0.06 0.82 4.63 -3.06 -0.01 0.81 16 17 N -0.60 -8.28 3.24 -168.06 -0.54 -8.83 16 18 C 0.57 8.12 7.52 -12.40 -0.09 8.03 16 19 O -0.54 -8.75 14.18 5.30 0.08 -8.67 16 20 C -0.13 -1.55 5.87 -104.95 -0.62 -2.16 16 21 C -0.04 -0.36 9.58 -39.22 -0.38 -0.74 16 22 C -0.14 -1.20 9.46 -39.47 -0.37 -1.57 16 23 C 0.14 1.39 6.65 -83.58 -0.56 0.83 16 24 N -0.43 -4.24 2.99 -63.17 -0.19 -4.43 16 25 C 0.16 1.53 12.06 -89.17 -1.08 0.45 16 26 N -0.29 -3.82 12.19 29.85 0.36 -3.46 16 27 N -0.29 -3.94 12.20 29.85 0.36 -3.57 16 28 C 0.17 1.73 12.06 -89.17 -1.08 0.65 16 29 C -0.13 -1.31 9.47 -39.47 -0.37 -1.68 16 30 C -0.09 -1.03 8.58 -39.22 -0.34 -1.37 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.15 5.93 -51.93 -0.31 0.85 16 34 H 0.08 1.15 7.94 -51.92 -0.41 0.74 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.39 9.00 7.73 -40.82 -0.32 8.69 16 37 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.09 1.32 6.54 -51.93 -0.34 0.98 16 39 H 0.07 0.91 6.80 -51.93 -0.35 0.56 16 40 H 0.15 1.38 7.66 -52.49 -0.40 0.98 16 41 H 0.14 0.76 6.84 -52.49 -0.36 0.41 16 42 H 0.22 1.15 7.17 -52.49 -0.38 0.77 16 43 H 0.23 1.56 7.17 -52.48 -0.38 1.19 16 44 H 0.14 1.14 6.84 -52.49 -0.36 0.78 16 45 H 0.18 2.15 2.76 -57.69 -0.16 1.99 16 LS Contribution 367.72 15.07 5.54 5.54 Total: -1.00 -31.42 367.72 -9.82 -41.24 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -5.42 Total: 10.07 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -5.45 Total: -2.97 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: 0.45 Total: -60.55 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.08 Total: -8.67 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.42 -9.82 -41.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989547650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.605 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds