Wall clock time and date at job start Sat Apr 11 2020 06:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 110.41760 * 2 1 4 4 C 1.55129 * 110.34499 * 122.44775 * 2 1 3 5 5 C 1.55152 * 101.49200 * 156.05693 * 4 2 1 6 6 H 1.09005 * 110.71753 * 82.69185 * 5 4 2 7 7 N 1.46491 * 110.87469 * 205.90147 * 5 4 2 8 8 C 1.36940 * 120.00100 * 200.06585 * 7 5 4 9 9 H 1.08003 * 120.00009 * 359.97438 * 8 7 5 10 10 C 1.38810 * 120.00622 * 179.97438 * 8 7 5 11 11 N 1.31624 * 119.99601 * 359.97438 * 10 8 7 12 12 Si 1.86790 * 120.00549 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46924 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47269 * 119.99871 * 12 10 8 15 15 H 1.48506 * 109.47429 * 240.00316 * 12 10 8 16 16 C 1.54328 * 102.93932 * 324.33224 * 5 4 2 17 17 N 1.47020 * 107.27004 * 22.19395 * 16 5 4 18 18 C 1.34777 * 125.65038 * 181.02685 * 17 16 5 19 19 O 1.21574 * 120.00735 * 185.49349 * 18 17 16 20 20 C 1.47683 * 119.99784 * 5.48768 * 18 17 16 21 21 C 1.39703 * 120.07808 * 172.02826 * 20 18 17 22 22 C 1.37735 * 119.91270 * 179.97438 * 21 20 18 23 23 C 1.39022 * 120.08536 * 359.97438 * 22 21 20 24 24 N 1.39927 * 119.92100 * 179.97438 * 23 22 21 25 25 C 1.36352 * 127.11315 * 359.69018 * 24 23 22 26 26 N 1.30502 * 107.19435 * 180.25720 * 25 24 23 27 27 N 1.28544 * 109.92175 * 359.97438 * 26 25 24 28 28 C 1.30504 * 109.91411 * 0.02562 * 27 26 25 29 29 C 1.39031 * 120.16086 * 0.27792 * 23 22 21 30 30 C 1.37731 * 120.07809 * 359.48354 * 29 23 22 31 31 H 1.08998 * 109.47509 * 180.84174 * 1 2 3 32 32 H 1.09005 * 109.46738 * 300.83946 * 1 2 3 33 33 H 1.08995 * 109.46983 * 60.83523 * 1 2 3 34 34 H 1.09008 * 111.19117 * 37.95022 * 4 2 1 35 35 H 1.09005 * 110.93959 * 274.05564 * 4 2 1 36 36 H 0.96998 * 120.00257 * 20.05402 * 7 5 4 37 37 H 0.97001 * 120.00015 * 180.02562 * 11 10 8 38 38 H 1.08997 * 109.88247 * 262.77461 * 16 5 4 39 39 H 1.09005 * 110.01216 * 141.67746 * 16 5 4 40 40 H 1.07992 * 120.04155 * 0.02562 * 21 20 18 41 41 H 1.07999 * 119.95754 * 180.02562 * 22 21 20 42 42 H 1.07994 * 126.40653 * 0.23775 * 25 24 23 43 43 H 1.08005 * 126.39841 * 179.97438 * 28 27 26 44 44 H 1.07993 * 119.95931 * 179.74630 * 29 23 22 45 45 H 1.08005 * 120.04082 * 180.28000 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0693 -0.7804 1.2274 5 6 3.4797 -1.1974 0.7333 6 1 4.1930 -0.3850 0.8728 7 7 3.9359 -2.4089 1.4189 8 6 5.2701 -2.7158 1.4517 9 1 5.9859 -2.0648 0.9718 10 6 5.7026 -3.8634 2.1018 11 7 4.8303 -4.6565 2.6872 12 14 7.5224 -4.2824 2.1460 13 1 8.2885 -3.2384 1.4191 14 1 7.9824 -4.3426 3.5567 15 1 7.7431 -5.5996 1.4967 16 6 3.2524 -1.4725 -0.7682 17 7 2.0431 -0.7384 -1.1683 18 6 1.4971 -0.7362 -2.4005 19 8 0.5511 -0.0129 -2.6451 20 6 2.0482 -1.6125 -3.4538 21 6 1.3863 -1.7376 -4.6777 22 6 1.9035 -2.5554 -5.6579 23 6 3.0829 -3.2554 -5.4307 24 7 3.6051 -4.0857 -6.4287 25 6 3.0782 -4.3180 -7.6647 26 7 3.8740 -5.1550 -8.2723 27 7 4.8584 -5.4598 -7.5038 28 6 4.7430 -4.8340 -6.3643 29 6 3.7416 -3.1375 -4.2120 30 6 3.2329 -2.3178 -3.2290 31 1 -0.3634 -1.0275 0.0151 32 1 -0.3633 0.5269 0.8824 33 1 -0.3633 0.5008 -0.8973 34 1 1.4548 -1.6556 1.4390 35 1 2.1372 -0.1328 2.1017 36 1 3.2931 -2.9936 1.8498 37 1 5.1325 -5.4583 3.1418 38 1 3.1088 -2.5406 -0.9317 39 1 4.1075 -1.1208 -1.3455 40 1 0.4707 -1.1931 -4.8554 41 1 1.3926 -2.6523 -6.6045 42 1 2.1715 -3.8897 -8.0658 43 1 5.4221 -4.8973 -5.5268 44 1 4.6554 -3.6859 -4.0376 45 1 3.7475 -2.2231 -2.2841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989547650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:04 Heat of formation + Delta-G solvation = 107.104753 kcal Electronic energy + Delta-G solvation = -29094.564130 eV Core-core repulsion = 25114.588947 eV Total energy + Delta-G solvation = -3979.975183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.33878 -41.77450 -40.03312 -38.69041 -36.10488 -35.96274 -33.56088 -33.18396 -32.41227 -31.51444 -30.70412 -30.08826 -27.14454 -26.10750 -25.57729 -24.76976 -23.67144 -22.55256 -22.29218 -21.66631 -20.60573 -19.65255 -19.17595 -18.23241 -17.68375 -17.28952 -16.95236 -16.73231 -16.42185 -16.16626 -15.58948 -15.41514 -15.34479 -15.23549 -15.18660 -14.80451 -14.46871 -14.27332 -14.15676 -13.82313 -13.40275 -13.26417 -13.07223 -12.88821 -12.83732 -12.70034 -12.46792 -12.34349 -12.14913 -12.05145 -11.79649 -11.67738 -11.59321 -11.52615 -10.99574 -10.72268 -10.65496 -10.25103 -9.80653 -9.57433 -9.03569 -7.92235 -5.21998 -0.68632 0.15582 0.81293 1.24974 1.51856 1.54542 1.62268 1.71737 1.76764 1.90901 2.58603 2.67768 3.28823 3.30971 3.39488 3.49271 3.57622 3.73080 3.80821 3.82335 3.86783 3.97422 4.10326 4.15709 4.19516 4.28763 4.42864 4.48418 4.52476 4.56450 4.69226 4.73409 4.80215 4.84544 4.90342 4.96245 5.08617 5.12153 5.16070 5.20324 5.30065 5.33493 5.43490 5.53926 5.59110 5.90011 6.28363 6.46796 7.06044 7.37020 7.50348 8.08285 8.31466 9.30716 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007800 B = 0.003726 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3588.901075 B = 7513.573438 C =10795.938330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.137 3.863 3 H 0.089 0.911 4 C -0.126 4.126 5 C 0.163 3.837 6 H 0.074 0.926 7 N -0.724 5.724 8 C -0.238 4.238 9 H 0.085 0.915 10 C -0.067 4.067 11 N -0.967 5.967 12 Si 0.963 3.037 13 H -0.262 1.262 14 H -0.301 1.301 15 H -0.297 1.297 16 C 0.073 3.927 17 N -0.603 5.603 18 C 0.568 3.432 19 O -0.567 6.567 20 C -0.146 4.146 21 C -0.037 4.037 22 C -0.127 4.127 23 C 0.147 3.853 24 N -0.431 5.431 25 C 0.173 3.827 26 N -0.335 5.335 27 N -0.334 5.334 28 C 0.168 3.832 29 C -0.134 4.134 30 C -0.097 4.097 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.376 0.624 37 H 0.249 0.751 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.153 0.847 41 H 0.172 0.828 42 H 0.264 0.736 43 H 0.251 0.749 44 H 0.156 0.844 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.049 8.507 -13.661 17.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.034 3.966 3 H 0.107 0.893 4 C -0.165 4.165 5 C 0.053 3.947 6 H 0.091 0.909 7 N -0.363 5.363 8 C -0.370 4.370 9 H 0.103 0.897 10 C -0.259 4.259 11 N -0.617 5.617 12 Si 0.793 3.207 13 H -0.186 1.186 14 H -0.229 1.229 15 H -0.225 1.225 16 C -0.052 4.052 17 N -0.335 5.335 18 C 0.359 3.641 19 O -0.448 6.448 20 C -0.150 4.150 21 C -0.056 4.056 22 C -0.147 4.147 23 C 0.053 3.947 24 N -0.118 5.118 25 C -0.114 4.114 26 N -0.171 5.171 27 N -0.170 5.170 28 C -0.119 4.119 29 C -0.154 4.154 30 C -0.116 4.116 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.208 0.792 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.171 0.829 41 H 0.190 0.810 42 H 0.279 0.721 43 H 0.267 0.733 44 H 0.173 0.827 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -6.754 7.931 -15.020 18.279 hybrid contribution 0.336 -0.153 1.510 1.555 sum -6.418 7.778 -13.510 16.858 Atomic orbital electron populations 1.22061 0.93713 1.01993 1.03655 1.22035 0.95265 0.95774 0.83483 0.89274 1.23106 0.95741 1.00359 0.97277 1.21427 0.94751 0.89463 0.89107 0.90850 1.42525 1.04977 1.25024 1.63744 1.19671 0.85156 1.04553 1.27584 0.89708 1.25445 1.00961 0.98241 1.01302 1.69807 1.34162 1.15730 1.41983 0.85230 0.81080 0.77677 0.76691 1.18573 1.22870 1.22493 1.23497 0.86078 0.96391 0.99206 1.48531 1.28009 1.47873 1.09085 1.18130 0.82423 0.82183 0.81408 1.90686 1.29747 1.43255 1.81122 1.20077 0.97994 1.01146 0.95783 1.21232 0.99161 0.95089 0.90162 1.21061 0.94376 0.97409 1.01848 1.18075 0.95399 0.93282 0.87902 1.44385 1.20150 1.33963 1.13312 1.27576 1.02789 0.98772 0.82263 1.74160 1.02178 1.14723 1.26041 1.74186 1.18441 1.22564 1.01772 1.27443 0.90539 0.92898 1.01052 1.21094 1.01961 1.01085 0.91268 1.22878 0.94621 0.92810 1.01243 0.93789 0.89884 0.91185 0.91403 0.88448 0.79189 0.94169 0.90884 0.89753 0.82934 0.81015 0.72073 0.73289 0.82688 0.80989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 8.77 71.98 0.63 -3.08 16 2 C 0.14 3.35 3.75 45.54 0.17 3.52 16 3 H 0.09 1.98 8.14 -2.39 -0.02 1.97 16 4 C -0.13 -3.33 6.12 32.06 0.20 -3.13 16 5 C 0.16 5.10 3.58 46.18 0.17 5.27 16 6 H 0.07 2.25 8.12 -2.38 -0.02 2.23 16 7 N -0.72 -30.64 5.18 -317.34 -1.64 -32.28 16 8 C -0.24 -11.32 9.98 84.03 0.84 -10.48 16 9 H 0.09 3.78 7.83 -2.91 -0.02 3.76 16 10 C -0.07 -3.43 5.50 84.86 0.47 -2.97 16 11 N -0.97 -54.37 13.06 21.65 0.28 -54.08 16 12 Si 0.96 41.93 29.55 68.60 2.03 43.95 16 13 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 14 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 15 H -0.30 -13.17 7.11 99.48 0.71 -12.47 16 16 C 0.07 2.02 4.63 86.73 0.40 2.42 16 17 N -0.60 -15.99 3.24 -803.90 -2.61 -18.60 16 18 C 0.57 15.61 7.52 86.74 0.65 16.27 16 19 O -0.57 -17.76 14.18 -3.95 -0.06 -17.82 16 20 C -0.15 -3.34 5.87 -20.07 -0.12 -3.46 16 21 C -0.04 -0.67 9.58 22.50 0.22 -0.45 16 22 C -0.13 -1.74 9.46 22.34 0.21 -1.53 16 23 C 0.15 2.38 6.65 38.23 0.25 2.63 16 24 N -0.43 -7.36 2.99 -353.76 -1.06 -8.42 16 25 C 0.17 2.84 12.06 179.84 2.17 5.01 16 26 N -0.34 -8.34 12.19 -59.47 -0.73 -9.07 16 27 N -0.33 -8.72 12.20 -59.46 -0.73 -9.45 16 28 C 0.17 3.22 12.06 179.84 2.17 5.39 16 29 C -0.13 -2.38 9.47 22.34 0.21 -2.17 16 30 C -0.10 -2.06 8.58 22.50 0.19 -1.87 16 31 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.07 1.88 5.93 -2.39 -0.01 1.87 16 34 H 0.07 1.96 7.94 -2.38 -0.02 1.94 16 35 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 36 H 0.38 17.68 7.73 -92.71 -0.72 16.97 16 37 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 38 H 0.07 2.23 6.54 -2.39 -0.02 2.22 16 39 H 0.08 2.08 6.80 -2.38 -0.02 2.06 16 40 H 0.15 2.55 7.66 -2.91 -0.02 2.53 16 41 H 0.17 1.07 6.84 -2.91 -0.02 1.05 16 42 H 0.26 1.58 7.17 -2.91 -0.02 1.56 16 43 H 0.25 2.97 7.17 -2.91 -0.02 2.95 16 44 H 0.16 2.18 6.84 -2.91 -0.02 2.16 16 45 H 0.17 3.91 2.76 -7.80 -0.02 3.89 16 Total: -1.00 -68.97 367.72 4.65 -64.32 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: 0.32 Total: 30.08 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 8.83 Total: 11.36 kcal Atomic # 7 Polarization: -125.42 SS G_CDS: -6.48 Total: -131.89 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.06 Total: -17.82 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Total: -68.97 4.65 -64.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989547650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.423 kcal (2) G-P(sol) polarization free energy of solvation -68.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds