Wall clock time and date at job start Sat Apr 11 2020 06:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.99851 * 2 1 4 4 C 1.54329 * 109.88306 * 238.90568 * 2 1 3 5 5 C 1.55150 * 102.94056 * 218.39316 * 4 2 1 6 6 H 1.09000 * 111.00373 * 277.38330 * 5 4 2 7 7 N 1.46499 * 111.00319 * 153.57795 * 5 4 2 8 8 C 1.36936 * 120.00081 * 158.17456 * 7 5 4 9 9 H 1.07999 * 120.00044 * 359.97438 * 8 7 5 10 10 C 1.38817 * 119.99959 * 179.71986 * 8 7 5 11 11 N 1.31621 * 119.99748 * 0.27757 * 10 8 7 12 12 Si 1.86800 * 120.00068 * 180.27824 * 10 8 7 13 13 H 1.48495 * 109.47295 * 89.99848 * 12 10 8 14 14 H 1.48498 * 109.46981 * 210.00253 * 12 10 8 15 15 H 1.48506 * 109.46969 * 330.00229 * 12 10 8 16 16 C 1.54906 * 101.62038 * 35.48117 * 5 4 2 17 17 N 1.47023 * 109.88338 * 121.09816 * 2 1 3 18 18 C 1.34777 * 125.64479 * 298.41404 * 17 2 1 19 19 O 1.21572 * 120.00038 * 354.20570 * 18 17 2 20 20 C 1.47677 * 119.99586 * 174.21005 * 18 17 2 21 21 C 1.39701 * 120.08083 * 335.19430 * 20 18 17 22 22 C 1.37735 * 119.91593 * 179.74104 * 21 20 18 23 23 C 1.39030 * 120.08183 * 0.53369 * 22 21 20 24 24 N 1.39929 * 119.92084 * 179.73999 * 23 22 21 25 25 C 1.36345 * 127.11564 * 179.66492 * 24 23 22 26 26 N 1.30506 * 107.19410 * 179.83770 * 25 24 23 27 27 N 1.28535 * 109.91972 * 0.43877 * 26 25 24 28 28 C 1.30506 * 109.91860 * 359.72291 * 27 26 25 29 29 C 1.39027 * 120.15963 * 359.72202 * 23 22 21 30 30 C 1.37734 * 120.08359 * 0.02562 * 29 23 22 31 31 H 1.08997 * 109.47431 * 181.09584 * 1 2 3 32 32 H 1.09001 * 109.46926 * 301.09809 * 1 2 3 33 33 H 1.09002 * 109.47267 * 61.09500 * 1 2 3 34 34 H 1.08995 * 110.71895 * 100.02330 * 4 2 1 35 35 H 1.09001 * 110.71279 * 336.75362 * 4 2 1 36 36 H 0.96998 * 119.99973 * 338.17206 * 7 5 4 37 37 H 0.97006 * 119.99391 * 179.97438 * 11 10 8 38 38 H 1.08992 * 110.36710 * 81.84856 * 16 5 4 39 39 H 1.09006 * 110.36255 * 204.17271 * 16 5 4 40 40 H 1.07998 * 120.03967 * 359.97438 * 21 20 18 41 41 H 1.07999 * 119.95916 * 180.25176 * 22 21 20 42 42 H 1.08007 * 126.40322 * 359.97376 * 25 24 23 43 43 H 1.07995 * 126.40066 * 179.97438 * 28 27 26 44 44 H 1.08000 * 119.95929 * 179.97438 * 29 23 22 45 45 H 1.07998 * 120.04659 * 179.97438 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2428 5 6 3.2875 -1.5143 -0.6924 6 1 4.1655 -0.8691 -0.6611 7 7 3.5531 -2.7195 -1.4817 8 6 4.8007 -3.2838 -1.4711 9 1 5.5890 -2.8401 -0.8811 10 6 5.0508 -4.4292 -2.2144 11 7 4.0901 -4.9697 -2.9337 12 14 6.7506 -5.2035 -2.1938 13 1 6.8276 -6.1996 -1.0952 14 1 7.0030 -5.8782 -3.4924 15 1 7.7727 -4.1480 -1.9774 16 6 2.8154 -1.8795 0.7371 17 7 2.0300 -0.7141 1.1839 18 6 1.8070 -0.3623 2.4657 19 8 1.2317 0.6783 2.7191 20 6 2.2617 -1.2408 3.5622 21 6 2.4371 -2.6083 3.3369 22 6 2.8664 -3.4237 4.3606 23 6 3.1144 -2.8892 5.6198 24 7 3.5452 -3.7216 6.6589 25 6 3.8358 -3.3555 7.9397 26 7 4.1949 -4.4358 8.5777 27 7 4.1576 -5.4461 7.7839 28 6 3.7670 -5.0656 6.5982 29 6 2.9359 -1.5297 5.8492 30 6 2.5118 -0.7073 4.8289 31 1 -0.3634 -1.0274 0.0197 32 1 -0.3633 0.5308 0.8800 33 1 -0.3634 0.4967 -0.8996 34 1 2.3529 -0.0460 -2.0201 35 1 1.3050 -1.4459 -1.6182 36 1 2.8451 -3.1179 -2.0118 37 1 4.2650 -5.7699 -3.4534 38 1 2.1899 -2.7717 0.7136 39 1 3.6731 -2.0334 1.3920 40 1 2.2399 -3.0250 2.3602 41 1 3.0061 -4.4803 4.1861 42 1 3.7773 -2.3582 8.3502 43 1 3.6430 -5.6972 5.7310 44 1 3.1291 -1.1180 6.8287 45 1 2.3729 0.3487 5.0078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989547652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:12 Heat of formation + Delta-G solvation = 105.734087 kcal Electronic energy + Delta-G solvation = -28986.392915 eV Core-core repulsion = 25006.358295 eV Total energy + Delta-G solvation = -3980.034619 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.57181 -40.68435 -39.17293 -37.51242 -35.25811 -34.36006 -32.42744 -31.65885 -31.52029 -30.74319 -29.93100 -28.55758 -25.86940 -25.14851 -24.04659 -23.98732 -22.72679 -21.64498 -21.33880 -20.47072 -19.44585 -18.93247 -17.55928 -17.28665 -16.52633 -16.42147 -16.00044 -15.92389 -15.38477 -14.82855 -14.65902 -14.40809 -14.23493 -14.07252 -13.85519 -13.63976 -13.43167 -13.33163 -12.93705 -12.79302 -12.50445 -12.27223 -11.91628 -11.82288 -11.53203 -11.52685 -11.25490 -11.09139 -10.86398 -10.81059 -10.76385 -10.42623 -10.15584 -9.98659 -9.86516 -9.84936 -9.53910 -9.14201 -8.95606 -8.53377 -7.22897 -5.97490 -3.29215 0.09795 0.85307 1.58151 1.96153 2.51531 2.66855 2.94681 3.30918 3.37823 3.38935 3.45732 3.98647 4.10205 4.21936 4.29397 4.38122 4.45220 4.63799 4.81166 4.82497 4.90170 4.96105 5.10221 5.16308 5.22508 5.35610 5.40830 5.46042 5.53792 5.60962 5.63881 5.67290 5.68668 5.85396 5.88529 5.96628 5.98236 6.03985 6.15508 6.18501 6.28760 6.32423 6.48704 6.58992 6.67321 7.51481 7.57185 8.11352 8.19892 8.28561 9.32177 9.84120 10.19036 11.24073 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007955 B = 0.003567 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3519.175016 B = 7848.130760 C =10923.632375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.075 0.925 4 C -0.137 4.137 5 C 0.172 3.828 6 H 0.068 0.932 7 N -0.710 5.710 8 C -0.253 4.253 9 H 0.073 0.927 10 C -0.005 4.005 11 N -0.927 5.927 12 Si 0.907 3.093 13 H -0.288 1.288 14 H -0.290 1.290 15 H -0.281 1.281 16 C 0.066 3.934 17 N -0.602 5.602 18 C 0.570 3.430 19 O -0.544 6.544 20 C -0.125 4.125 21 C -0.063 4.063 22 C -0.132 4.132 23 C 0.146 3.854 24 N -0.430 5.430 25 C 0.159 3.841 26 N -0.292 5.292 27 N -0.292 5.292 28 C 0.165 3.835 29 C -0.138 4.138 30 C -0.037 4.037 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.388 0.612 37 H 0.258 0.742 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.158 0.842 41 H 0.141 0.859 42 H 0.223 0.777 43 H 0.225 0.775 44 H 0.138 0.862 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.735 7.803 13.246 16.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.093 0.907 4 C -0.176 4.176 5 C 0.059 3.941 6 H 0.086 0.914 7 N -0.350 5.350 8 C -0.384 4.384 9 H 0.091 0.909 10 C -0.202 4.202 11 N -0.574 5.574 12 Si 0.737 3.263 13 H -0.215 1.215 14 H -0.216 1.216 15 H -0.206 1.206 16 C -0.060 4.060 17 N -0.334 5.334 18 C 0.359 3.641 19 O -0.423 6.423 20 C -0.129 4.129 21 C -0.081 4.081 22 C -0.152 4.152 23 C 0.052 3.948 24 N -0.117 5.117 25 C -0.127 4.127 26 N -0.129 5.129 27 N -0.129 5.129 28 C -0.122 4.122 29 C -0.158 4.158 30 C -0.056 4.056 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.222 0.778 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.175 0.825 41 H 0.158 0.842 42 H 0.239 0.761 43 H 0.241 0.759 44 H 0.156 0.844 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.361 7.328 14.614 17.205 hybrid contribution 0.294 0.068 -1.241 1.277 sum -5.067 7.396 13.373 16.100 Atomic orbital electron populations 1.22127 0.94959 1.02290 1.02507 1.21557 0.94262 0.96299 0.84336 0.90687 1.23043 0.99089 0.99718 0.95767 1.21309 0.94786 0.89581 0.88392 0.91446 1.42318 1.11691 1.27732 1.53284 1.19229 0.88327 1.06599 1.24242 0.90950 1.24764 0.97758 0.98269 0.99378 1.69655 1.31654 1.23002 1.33121 0.86210 0.83676 0.79265 0.77127 1.21517 1.21613 1.20611 1.23833 0.94362 0.87483 1.00305 1.48536 1.51431 1.29062 1.04412 1.17785 0.79604 0.85161 0.81517 1.90759 1.43498 1.24587 1.83503 1.20087 1.03889 0.94134 0.94740 1.21934 0.93733 0.92354 1.00121 1.20867 1.02444 1.01275 0.90568 1.17937 0.99683 0.90074 0.87080 1.44313 1.48539 1.08702 1.10106 1.26798 1.02269 1.02458 0.81182 1.74246 1.17868 0.95429 1.25358 1.74262 1.17357 1.22112 0.99130 1.26898 1.02030 0.82289 1.00940 1.20754 1.03654 0.90641 1.00742 1.21092 0.93569 1.00658 0.90307 0.92427 0.91777 0.91602 0.90099 0.90224 0.77776 0.93217 0.90835 0.90747 0.82491 0.84156 0.76097 0.75882 0.84423 0.83635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.10 37.16 0.34 -1.59 16 2 C 0.14 1.81 3.43 -66.95 -0.23 1.58 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.14 -1.89 6.12 -24.90 -0.15 -2.05 16 5 C 0.17 2.87 3.70 -65.79 -0.24 2.62 16 6 H 0.07 1.17 8.11 -51.93 -0.42 0.75 16 7 N -0.71 -15.31 5.26 -51.36 -0.27 -15.58 16 8 C -0.25 -6.24 9.97 -15.06 -0.15 -6.39 16 9 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 10 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 11 N -0.93 -25.63 13.06 55.49 0.72 -24.91 16 12 Si 0.91 20.68 29.55 -169.99 -5.02 15.66 16 13 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 C 0.07 0.95 4.69 -2.51 -0.01 0.94 16 17 N -0.60 -8.26 3.07 -164.15 -0.50 -8.76 16 18 C 0.57 8.03 7.38 -12.41 -0.09 7.94 16 19 O -0.54 -8.93 15.87 5.30 0.08 -8.85 16 20 C -0.12 -1.45 5.67 -104.95 -0.59 -2.05 16 21 C -0.06 -0.66 8.06 -39.22 -0.32 -0.98 16 22 C -0.13 -1.21 9.47 -39.47 -0.37 -1.58 16 23 C 0.15 1.31 6.65 -83.58 -0.56 0.75 16 24 N -0.43 -4.03 2.99 -63.17 -0.19 -4.22 16 25 C 0.16 1.47 12.06 -89.17 -1.08 0.39 16 26 N -0.29 -3.72 12.19 29.85 0.36 -3.35 16 27 N -0.29 -3.82 12.19 29.85 0.36 -3.45 16 28 C 0.16 1.64 12.06 -89.16 -1.08 0.57 16 29 C -0.14 -1.11 9.46 -39.47 -0.37 -1.48 16 30 C -0.04 -0.36 9.58 -39.22 -0.38 -0.73 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.85 7.10 -51.93 -0.37 0.48 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.08 1.11 7.71 -51.93 -0.40 0.71 16 36 H 0.39 8.96 7.73 -40.82 -0.32 8.65 16 37 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.07 1.08 6.81 -51.93 -0.35 0.72 16 39 H 0.07 1.07 6.85 -51.93 -0.36 0.71 16 40 H 0.16 1.72 4.61 -52.49 -0.24 1.47 16 41 H 0.14 1.02 6.84 -52.49 -0.36 0.66 16 42 H 0.22 1.07 7.17 -52.48 -0.38 0.69 16 43 H 0.22 1.42 7.17 -52.49 -0.38 1.05 16 44 H 0.14 0.71 6.84 -52.49 -0.36 0.35 16 45 H 0.15 1.31 7.84 -52.49 -0.41 0.90 16 LS Contribution 371.89 15.07 5.60 5.60 Total: -1.00 -31.91 371.89 -9.80 -41.70 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -5.58 Total: 8.43 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -5.38 Total: -2.28 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: 0.49 Total: -60.28 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.08 Total: -8.85 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.91 -9.80 -41.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989547652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.437 kcal (2) G-P(sol) polarization free energy of solvation -31.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds