Wall clock time and date at job start Sat Apr 11 2020 06:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.99851 * 2 1 4 4 C 1.54329 * 109.88306 * 238.90568 * 2 1 3 5 5 C 1.55150 * 102.94056 * 218.39316 * 4 2 1 6 6 H 1.09000 * 111.00373 * 277.38330 * 5 4 2 7 7 N 1.46499 * 111.00319 * 153.57795 * 5 4 2 8 8 C 1.36936 * 120.00081 * 158.17456 * 7 5 4 9 9 H 1.07999 * 120.00044 * 359.97438 * 8 7 5 10 10 C 1.38817 * 119.99959 * 179.71986 * 8 7 5 11 11 N 1.31621 * 119.99748 * 0.27757 * 10 8 7 12 12 Si 1.86800 * 120.00068 * 180.27824 * 10 8 7 13 13 H 1.48495 * 109.47295 * 89.99848 * 12 10 8 14 14 H 1.48498 * 109.46981 * 210.00253 * 12 10 8 15 15 H 1.48506 * 109.46969 * 330.00229 * 12 10 8 16 16 C 1.54906 * 101.62038 * 35.48117 * 5 4 2 17 17 N 1.47023 * 109.88338 * 121.09816 * 2 1 3 18 18 C 1.34777 * 125.64479 * 298.41404 * 17 2 1 19 19 O 1.21572 * 120.00038 * 354.20570 * 18 17 2 20 20 C 1.47677 * 119.99586 * 174.21005 * 18 17 2 21 21 C 1.39701 * 120.08083 * 335.19430 * 20 18 17 22 22 C 1.37735 * 119.91593 * 179.74104 * 21 20 18 23 23 C 1.39030 * 120.08183 * 0.53369 * 22 21 20 24 24 N 1.39929 * 119.92084 * 179.73999 * 23 22 21 25 25 C 1.36345 * 127.11564 * 179.66492 * 24 23 22 26 26 N 1.30506 * 107.19410 * 179.83770 * 25 24 23 27 27 N 1.28535 * 109.91972 * 0.43877 * 26 25 24 28 28 C 1.30506 * 109.91860 * 359.72291 * 27 26 25 29 29 C 1.39027 * 120.15963 * 359.72202 * 23 22 21 30 30 C 1.37734 * 120.08359 * 0.02562 * 29 23 22 31 31 H 1.08997 * 109.47431 * 181.09584 * 1 2 3 32 32 H 1.09001 * 109.46926 * 301.09809 * 1 2 3 33 33 H 1.09002 * 109.47267 * 61.09500 * 1 2 3 34 34 H 1.08995 * 110.71895 * 100.02330 * 4 2 1 35 35 H 1.09001 * 110.71279 * 336.75362 * 4 2 1 36 36 H 0.96998 * 119.99973 * 338.17206 * 7 5 4 37 37 H 0.97006 * 119.99391 * 179.97438 * 11 10 8 38 38 H 1.08992 * 110.36710 * 81.84856 * 16 5 4 39 39 H 1.09006 * 110.36255 * 204.17271 * 16 5 4 40 40 H 1.07998 * 120.03967 * 359.97438 * 21 20 18 41 41 H 1.07999 * 119.95916 * 180.25176 * 22 21 20 42 42 H 1.08007 * 126.40322 * 359.97376 * 25 24 23 43 43 H 1.07995 * 126.40066 * 179.97438 * 28 27 26 44 44 H 1.08000 * 119.95929 * 179.97438 * 29 23 22 45 45 H 1.07998 * 120.04659 * 179.97438 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2428 5 6 3.2875 -1.5143 -0.6924 6 1 4.1655 -0.8691 -0.6611 7 7 3.5531 -2.7195 -1.4817 8 6 4.8007 -3.2838 -1.4711 9 1 5.5890 -2.8401 -0.8811 10 6 5.0508 -4.4292 -2.2144 11 7 4.0901 -4.9697 -2.9337 12 14 6.7506 -5.2035 -2.1938 13 1 6.8276 -6.1996 -1.0952 14 1 7.0030 -5.8782 -3.4924 15 1 7.7727 -4.1480 -1.9774 16 6 2.8154 -1.8795 0.7371 17 7 2.0300 -0.7141 1.1839 18 6 1.8070 -0.3623 2.4657 19 8 1.2317 0.6783 2.7191 20 6 2.2617 -1.2408 3.5622 21 6 2.4371 -2.6083 3.3369 22 6 2.8664 -3.4237 4.3606 23 6 3.1144 -2.8892 5.6198 24 7 3.5452 -3.7216 6.6589 25 6 3.8358 -3.3555 7.9397 26 7 4.1949 -4.4358 8.5777 27 7 4.1576 -5.4461 7.7839 28 6 3.7670 -5.0656 6.5982 29 6 2.9359 -1.5297 5.8492 30 6 2.5118 -0.7073 4.8289 31 1 -0.3634 -1.0274 0.0197 32 1 -0.3633 0.5308 0.8800 33 1 -0.3634 0.4967 -0.8996 34 1 2.3529 -0.0460 -2.0201 35 1 1.3050 -1.4459 -1.6182 36 1 2.8451 -3.1179 -2.0118 37 1 4.2650 -5.7699 -3.4534 38 1 2.1899 -2.7717 0.7136 39 1 3.6731 -2.0334 1.3920 40 1 2.2399 -3.0250 2.3602 41 1 3.0061 -4.4803 4.1861 42 1 3.7773 -2.3582 8.3502 43 1 3.6430 -5.6972 5.7310 44 1 3.1291 -1.1180 6.8287 45 1 2.3729 0.3487 5.0078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989547652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:11 Heat of formation + Delta-G solvation = 89.194493 kcal Electronic energy + Delta-G solvation = -28987.110125 eV Core-core repulsion = 25006.358295 eV Total energy + Delta-G solvation = -3980.751830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.33169 -41.69260 -40.06699 -38.70383 -36.06858 -35.99667 -33.45561 -33.12672 -32.45470 -31.51981 -30.77905 -30.05854 -26.95821 -26.15230 -25.58326 -24.80565 -23.69381 -22.46849 -22.29189 -21.70281 -20.44499 -19.70593 -19.24226 -18.36351 -17.61169 -17.27686 -16.99542 -16.76561 -16.51111 -16.02908 -15.63306 -15.42759 -15.34254 -15.17899 -14.94358 -14.76086 -14.53805 -14.27547 -14.19748 -13.87540 -13.63577 -13.40965 -13.05405 -12.86203 -12.81623 -12.68749 -12.41757 -12.33057 -12.19292 -12.03582 -12.00481 -11.73471 -11.61444 -11.48392 -11.12003 -10.89681 -10.64646 -10.24596 -9.82448 -9.60800 -9.02926 -7.93558 -5.22843 -0.67266 0.14476 0.82488 1.25358 1.51083 1.52987 1.59762 1.71876 1.73071 1.88987 2.57616 2.63019 3.28218 3.29637 3.38365 3.48809 3.57980 3.70954 3.79069 3.82401 3.96280 3.97373 4.06763 4.16067 4.17077 4.27683 4.42567 4.48001 4.50822 4.52991 4.70822 4.73411 4.78600 4.85756 4.90933 4.94570 5.05469 5.10980 5.14679 5.19548 5.26126 5.37177 5.39857 5.45956 5.56813 5.90258 6.27566 6.45259 7.02508 7.36385 7.51438 8.07086 8.31374 9.28922 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007955 B = 0.003567 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3519.175016 B = 7848.130760 C =10923.632375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.138 3.862 3 H 0.077 0.923 4 C -0.125 4.125 5 C 0.163 3.837 6 H 0.062 0.938 7 N -0.720 5.720 8 C -0.241 4.241 9 H 0.078 0.922 10 C -0.063 4.063 11 N -0.963 5.963 12 Si 0.962 3.038 13 H -0.287 1.287 14 H -0.301 1.301 15 H -0.272 1.272 16 C 0.084 3.916 17 N -0.602 5.602 18 C 0.569 3.431 19 O -0.571 6.571 20 C -0.144 4.144 21 C -0.069 4.069 22 C -0.132 4.132 23 C 0.147 3.853 24 N -0.432 5.432 25 C 0.173 3.827 26 N -0.336 5.336 27 N -0.334 5.334 28 C 0.168 3.832 29 C -0.125 4.125 30 C -0.038 4.038 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.378 0.622 37 H 0.251 0.749 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.149 0.851 41 H 0.158 0.842 42 H 0.264 0.736 43 H 0.252 0.748 44 H 0.173 0.827 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.534 8.838 14.566 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.035 3.965 3 H 0.095 0.905 4 C -0.164 4.164 5 C 0.053 3.947 6 H 0.080 0.920 7 N -0.359 5.359 8 C -0.373 4.373 9 H 0.096 0.904 10 C -0.256 4.256 11 N -0.613 5.613 12 Si 0.792 3.208 13 H -0.214 1.214 14 H -0.227 1.227 15 H -0.197 1.197 16 C -0.042 4.042 17 N -0.334 5.334 18 C 0.360 3.640 19 O -0.452 6.452 20 C -0.148 4.148 21 C -0.087 4.087 22 C -0.152 4.152 23 C 0.054 3.946 24 N -0.118 5.118 25 C -0.114 4.114 26 N -0.172 5.172 27 N -0.170 5.170 28 C -0.119 4.119 29 C -0.144 4.144 30 C -0.057 4.057 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.211 0.789 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.167 0.833 41 H 0.176 0.824 42 H 0.279 0.721 43 H 0.268 0.732 44 H 0.190 0.810 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.151 8.397 15.981 18.774 hybrid contribution 0.200 -0.146 -1.583 1.602 sum -4.951 8.252 14.399 17.318 Atomic orbital electron populations 1.22055 0.93946 1.02200 1.02878 1.21608 0.95045 0.96158 0.83711 0.90471 1.22944 0.97598 0.99531 0.96327 1.21466 0.95937 0.88082 0.89257 0.91982 1.42399 1.10519 1.28970 1.54053 1.19566 0.89438 1.05827 1.22450 0.90412 1.25406 1.00542 0.99447 1.00231 1.69786 1.33250 1.23527 1.34777 0.85314 0.80635 0.78482 0.76349 1.21393 1.22750 1.19694 1.23450 0.94510 0.87630 0.98563 1.48542 1.51338 1.28752 1.04796 1.18176 0.78954 0.85067 0.81840 1.90738 1.44784 1.25897 1.83826 1.20025 1.05690 0.94226 0.94817 1.21814 0.94503 0.92129 1.00292 1.21034 1.01719 1.02067 0.90355 1.18020 0.99316 0.90430 0.86817 1.44376 1.48596 1.08567 1.10280 1.27578 0.99859 1.03220 0.80721 1.74163 1.19968 0.96474 1.26550 1.74183 1.19214 1.23167 1.00469 1.27454 1.00592 0.82892 1.00930 1.21058 1.01756 0.89929 1.01706 1.21208 0.93440 1.01245 0.89855 0.92645 0.93001 0.89660 0.89036 0.90275 0.78874 0.94018 0.90958 0.90500 0.83315 0.82440 0.72089 0.73179 0.80986 0.83044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.10 71.98 0.65 -2.83 16 2 C 0.14 3.44 3.43 45.34 0.16 3.60 16 3 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 4 C -0.13 -3.32 6.12 31.78 0.19 -3.13 16 5 C 0.16 5.32 3.70 46.38 0.17 5.49 16 6 H 0.06 2.10 8.11 -2.39 -0.02 2.08 16 7 N -0.72 -30.87 5.26 -316.39 -1.66 -32.53 16 8 C -0.24 -11.76 9.97 84.03 0.84 -10.92 16 9 H 0.08 3.64 7.83 -2.91 -0.02 3.62 16 10 C -0.06 -3.28 5.50 84.86 0.47 -2.81 16 11 N -0.96 -53.94 13.06 21.65 0.28 -53.66 16 12 Si 0.96 42.48 29.55 68.60 2.03 44.50 16 13 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 14 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 15 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 16 C 0.08 2.35 4.69 86.85 0.41 2.76 16 17 N -0.60 -16.00 3.07 -791.51 -2.43 -18.42 16 18 C 0.57 15.53 7.38 86.74 0.64 16.17 16 19 O -0.57 -18.35 15.87 -3.94 -0.06 -18.41 16 20 C -0.14 -3.14 5.67 -20.08 -0.11 -3.26 16 21 C -0.07 -1.35 8.06 22.50 0.18 -1.17 16 22 C -0.13 -2.12 9.47 22.34 0.21 -1.91 16 23 C 0.15 2.20 6.65 38.23 0.25 2.45 16 24 N -0.43 -6.87 2.99 -353.76 -1.06 -7.93 16 25 C 0.17 2.70 12.06 179.84 2.17 4.87 16 26 N -0.34 -8.11 12.19 -59.46 -0.73 -8.84 16 27 N -0.33 -8.45 12.19 -59.47 -0.73 -9.17 16 28 C 0.17 3.04 12.06 179.84 2.17 5.20 16 29 C -0.13 -1.56 9.46 22.34 0.21 -1.35 16 30 C -0.04 -0.65 9.58 22.51 0.22 -0.43 16 31 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.05 1.33 7.10 -2.39 -0.02 1.31 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.08 2.14 7.71 -2.39 -0.02 2.12 16 36 H 0.38 17.60 7.73 -92.71 -0.72 16.88 16 37 H 0.25 13.83 8.31 -92.70 -0.77 13.05 16 38 H 0.07 2.08 6.81 -2.39 -0.02 2.06 16 39 H 0.08 2.13 6.85 -2.38 -0.02 2.11 16 40 H 0.15 3.13 4.61 -2.91 -0.01 3.12 16 41 H 0.16 1.89 6.84 -2.91 -0.02 1.87 16 42 H 0.26 1.38 7.17 -2.91 -0.02 1.36 16 43 H 0.25 2.61 7.17 -2.91 -0.02 2.59 16 44 H 0.17 0.90 6.84 -2.91 -0.02 0.88 16 45 H 0.15 2.39 7.84 -2.91 -0.02 2.36 16 Total: -1.00 -69.61 371.89 4.80 -64.81 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: 0.33 Total: 26.93 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 8.83 Total: 12.73 kcal Atomic # 7 Polarization: -124.24 SS G_CDS: -6.32 Total: -130.56 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.06 Total: -18.41 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -69.61 4.80 -64.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989547652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.002 kcal (2) G-P(sol) polarization free energy of solvation -69.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds