Wall clock time and date at job start Sat Apr 11 2020 06:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.99479 * 2 1 4 4 C 1.54326 * 109.88199 * 238.90395 * 2 1 3 5 5 C 1.55158 * 102.93899 * 262.77347 * 4 2 1 6 6 H 1.09007 * 111.00383 * 82.61118 * 5 4 2 7 7 N 1.46498 * 111.00421 * 206.41979 * 5 4 2 8 8 C 1.36932 * 120.00341 * 205.00118 * 7 5 4 9 9 H 1.08000 * 119.99771 * 359.97438 * 8 7 5 10 10 C 1.38813 * 120.00164 * 180.02562 * 8 7 5 11 11 N 1.31615 * 120.00057 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99955 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47158 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47347 * 120.00107 * 12 10 8 15 15 H 1.48504 * 109.47077 * 239.99983 * 12 10 8 16 16 C 1.55126 * 101.48968 * 324.33443 * 5 4 2 17 17 N 1.47013 * 109.88350 * 121.09240 * 2 1 3 18 18 C 1.34779 * 125.65051 * 300.44511 * 17 2 1 19 19 O 1.21577 * 119.99718 * 5.71618 * 18 17 2 20 20 C 1.47675 * 120.00047 * 185.72629 * 18 17 2 21 21 C 1.39702 * 120.07484 * 204.56123 * 20 18 17 22 22 C 1.37739 * 119.91389 * 179.97438 * 21 20 18 23 23 C 1.39026 * 120.08269 * 359.97438 * 22 21 20 24 24 N 1.39924 * 119.91870 * 179.97438 * 23 22 21 25 25 C 1.36360 * 127.11845 * 359.68923 * 24 23 22 26 26 N 1.30501 * 107.19498 * 179.83928 * 25 24 23 27 27 N 1.28536 * 109.91872 * 0.43536 * 26 25 24 28 28 C 1.30501 * 109.92357 * 359.72607 * 27 26 25 29 29 C 1.39028 * 120.15895 * 0.02562 * 23 22 21 30 30 C 1.37728 * 120.08304 * 359.97438 * 29 23 22 31 31 H 1.09003 * 109.47140 * 300.36065 * 1 2 3 32 32 H 1.08997 * 109.47262 * 60.36111 * 1 2 3 33 33 H 1.08997 * 109.46930 * 180.35983 * 1 2 3 34 34 H 1.08995 * 110.71871 * 21.13746 * 4 2 1 35 35 H 1.08993 * 110.72317 * 144.23364 * 4 2 1 36 36 H 0.97005 * 119.99586 * 25.00715 * 7 5 4 37 37 H 0.96997 * 120.00391 * 180.02562 * 11 10 8 38 38 H 1.08996 * 110.49529 * 278.45848 * 16 5 4 39 39 H 1.08996 * 110.34440 * 156.05516 * 16 5 4 40 40 H 1.07995 * 120.04506 * 359.95205 * 21 20 18 41 41 H 1.08001 * 119.96067 * 179.72813 * 22 21 20 42 42 H 1.08001 * 126.39818 * 359.97438 * 25 24 23 43 43 H 1.07998 * 126.40058 * 179.97438 * 28 27 26 44 44 H 1.08001 * 119.95552 * 179.97438 * 29 23 22 45 45 H 1.07999 * 120.04522 * 180.02562 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2427 5 6 2.3519 -2.1695 -0.6923 6 1 1.4453 -2.7739 -0.6609 7 7 3.3937 -2.8313 -1.4815 8 6 3.4568 -4.1985 -1.5227 9 1 2.7388 -4.7890 -0.9729 10 6 4.4442 -4.8256 -2.2701 11 7 5.3201 -4.1060 -2.9389 12 14 4.5299 -6.6908 -2.3267 13 1 3.4401 -7.2618 -1.4953 14 1 4.3756 -7.1510 -3.7301 15 1 5.8427 -7.1423 -1.7993 16 6 2.8613 -1.8465 0.7369 17 7 2.0300 -0.7139 1.1839 18 6 1.7753 -0.3844 2.4657 19 8 0.9949 0.5128 2.7191 20 6 2.4444 -1.1128 3.5623 21 6 1.8564 -1.1660 4.8285 22 6 2.4830 -1.8468 5.8488 23 6 3.6988 -2.4810 5.6197 24 7 4.3326 -3.1712 6.6588 25 6 3.8947 -3.3085 7.9428 26 7 4.7803 -4.0264 8.5778 27 7 5.7421 -4.3380 7.7841 28 6 5.5190 -3.8406 6.5984 29 6 4.2868 -2.4302 4.3609 30 6 3.6661 -1.7513 3.3358 31 1 -0.3633 0.5194 0.8867 32 1 -0.3633 0.5082 -0.8932 33 1 -0.3633 -1.0276 0.0065 34 1 1.2918 -0.7890 -2.0200 35 1 2.9639 -0.2814 -1.6201 36 1 4.0388 -2.3009 -1.9750 37 1 6.0099 -4.5441 -3.4615 38 1 3.9123 -1.5588 0.7115 39 1 2.7177 -2.7048 1.3933 40 1 0.9120 -0.6736 5.0072 41 1 2.0313 -1.8846 6.8291 42 1 2.9838 -2.9012 8.3563 43 1 6.1554 -3.9402 5.7315 44 1 5.2315 -2.9237 4.1867 45 1 4.1232 -1.7126 2.3581 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989547653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:15 Heat of formation + Delta-G solvation = 106.506198 kcal Electronic energy + Delta-G solvation = -28985.075667 eV Core-core repulsion = 25005.074529 eV Total energy + Delta-G solvation = -3980.001138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.57375 -40.69743 -39.18774 -37.51672 -35.26558 -34.34289 -32.46216 -31.67075 -31.45519 -30.74556 -29.91391 -28.48247 -25.84504 -25.16538 -24.07325 -23.98472 -22.77968 -21.63214 -21.48705 -20.43406 -19.38762 -18.96448 -17.50228 -17.41633 -16.51974 -16.24235 -15.99121 -15.69336 -15.54307 -14.83982 -14.69345 -14.48373 -14.32979 -14.12730 -13.75539 -13.52236 -13.41163 -13.18663 -13.07896 -12.89086 -12.57489 -12.08635 -11.94910 -11.85464 -11.55737 -11.48609 -11.30382 -11.08068 -10.86837 -10.82452 -10.75679 -10.36095 -10.12961 -9.94582 -9.86428 -9.85243 -9.54173 -9.14651 -8.95574 -8.54482 -7.22938 -5.97805 -3.29480 0.09511 0.85004 1.57907 1.95878 2.51305 2.66484 2.94292 3.30680 3.37757 3.39430 3.45839 3.98328 4.09938 4.21636 4.28941 4.37893 4.45156 4.63511 4.80833 4.82408 4.91212 4.96820 5.12979 5.16472 5.22173 5.33626 5.42922 5.46804 5.49434 5.60789 5.65688 5.70576 5.72514 5.86318 5.91377 5.95783 5.98127 6.06378 6.13446 6.17281 6.30211 6.39914 6.48372 6.58615 6.68168 7.51792 7.57056 8.11321 8.19528 8.28319 9.31879 9.83811 10.18666 11.23819 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008060 B = 0.003520 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3472.954434 B = 7953.600199 C =10999.469916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.139 3.861 3 H 0.072 0.928 4 C -0.139 4.139 5 C 0.174 3.826 6 H 0.070 0.930 7 N -0.711 5.711 8 C -0.253 4.253 9 H 0.073 0.927 10 C -0.005 4.005 11 N -0.927 5.927 12 Si 0.906 3.094 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.290 1.290 16 C 0.064 3.936 17 N -0.602 5.602 18 C 0.570 3.430 19 O -0.543 6.543 20 C -0.125 4.125 21 C -0.037 4.037 22 C -0.138 4.138 23 C 0.146 3.854 24 N -0.430 5.430 25 C 0.159 3.841 26 N -0.292 5.292 27 N -0.292 5.292 28 C 0.165 3.835 29 C -0.132 4.132 30 C -0.063 4.063 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.388 0.612 37 H 0.257 0.743 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.146 0.854 41 H 0.138 0.862 42 H 0.223 0.777 43 H 0.225 0.775 44 H 0.141 0.859 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.887 7.677 13.421 16.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.090 0.910 4 C -0.178 4.178 5 C 0.061 3.939 6 H 0.088 0.912 7 N -0.350 5.350 8 C -0.383 4.383 9 H 0.091 0.909 10 C -0.202 4.202 11 N -0.574 5.574 12 Si 0.737 3.263 13 H -0.204 1.204 14 H -0.217 1.217 15 H -0.217 1.217 16 C -0.061 4.061 17 N -0.334 5.334 18 C 0.359 3.641 19 O -0.423 6.423 20 C -0.128 4.128 21 C -0.056 4.056 22 C -0.158 4.158 23 C 0.052 3.948 24 N -0.117 5.117 25 C -0.127 4.127 26 N -0.129 5.129 27 N -0.129 5.129 28 C -0.121 4.121 29 C -0.152 4.152 30 C -0.082 4.082 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.222 0.778 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.164 0.836 41 H 0.156 0.844 42 H 0.239 0.761 43 H 0.241 0.759 44 H 0.158 0.842 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.583 7.148 14.788 17.348 hybrid contribution -0.171 -0.244 -1.297 1.331 sum -5.754 6.904 13.491 16.211 Atomic orbital electron populations 1.22156 0.94799 1.02437 1.02638 1.21554 0.94647 0.95832 0.84349 0.90995 1.23059 1.01886 0.97077 0.95816 1.21343 0.92924 0.91358 0.88263 0.91227 1.42336 1.33270 1.04102 1.55291 1.19279 1.11344 0.82410 1.25303 0.90896 1.24763 0.97845 0.98015 0.99574 1.69657 1.18828 1.34195 1.34732 0.86144 0.77456 0.85229 0.77474 1.20435 1.21661 1.21671 1.23887 0.94589 0.87256 1.00384 1.48511 1.49794 1.30695 1.04416 1.17789 0.81574 0.83220 0.81504 1.90750 1.36056 1.31989 1.83470 1.20083 0.96650 1.01370 0.94745 1.21090 0.99480 0.94710 0.90321 1.20757 0.94024 1.00288 1.00734 1.17937 0.93777 0.95952 0.87098 1.44317 1.18382 1.39045 1.09932 1.26799 1.02894 1.01899 0.81110 1.74245 1.00032 1.13181 1.25434 1.74260 1.19219 1.20230 0.99156 1.26899 0.88011 0.96323 1.00916 1.20865 1.01520 1.02208 0.90568 1.21949 0.93680 0.92435 1.00135 0.91204 0.91887 0.92400 0.89977 0.90463 0.77795 0.93262 0.90799 0.90742 0.83638 0.84426 0.76100 0.75878 0.84155 0.82454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.05 37.16 0.34 -1.67 16 2 C 0.14 1.83 3.53 -66.95 -0.24 1.59 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 4 C -0.14 -1.93 6.14 -24.89 -0.15 -2.09 16 5 C 0.17 2.90 3.73 -65.66 -0.24 2.65 16 6 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 7 N -0.71 -15.31 5.24 -51.24 -0.27 -15.58 16 8 C -0.25 -6.23 9.96 -15.06 -0.15 -6.38 16 9 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 10 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 11 N -0.93 -25.63 13.06 55.49 0.72 -24.90 16 12 Si 0.91 20.69 29.55 -169.99 -5.02 15.67 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 16 C 0.06 0.93 4.69 -2.41 -0.01 0.92 16 17 N -0.60 -8.23 3.08 -164.05 -0.51 -8.74 16 18 C 0.57 7.98 7.46 -12.41 -0.09 7.89 16 19 O -0.54 -8.82 15.31 5.30 0.08 -8.74 16 20 C -0.12 -1.44 5.67 -104.95 -0.60 -2.04 16 21 C -0.04 -0.35 9.58 -39.22 -0.38 -0.73 16 22 C -0.14 -1.10 9.47 -39.47 -0.37 -1.48 16 23 C 0.15 1.30 6.65 -83.58 -0.56 0.74 16 24 N -0.43 -4.01 2.99 -63.17 -0.19 -4.20 16 25 C 0.16 1.46 12.06 -89.16 -1.08 0.39 16 26 N -0.29 -3.71 12.19 29.85 0.36 -3.34 16 27 N -0.29 -3.80 12.19 29.85 0.36 -3.44 16 28 C 0.16 1.63 12.06 -89.16 -1.08 0.56 16 29 C -0.13 -1.20 9.46 -39.48 -0.37 -1.57 16 30 C -0.06 -0.67 8.06 -39.22 -0.32 -0.98 16 31 H 0.07 0.95 6.58 -51.93 -0.34 0.61 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.08 7.83 -51.93 -0.41 0.67 16 35 H 0.08 1.08 8.01 -51.93 -0.42 0.66 16 36 H 0.39 8.95 7.77 -40.82 -0.32 8.64 16 37 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.07 1.07 6.84 -51.93 -0.36 0.72 16 39 H 0.07 1.06 6.80 -51.93 -0.35 0.71 16 40 H 0.15 1.30 7.84 -52.49 -0.41 0.88 16 41 H 0.14 0.70 6.84 -52.49 -0.36 0.34 16 42 H 0.22 1.06 7.17 -52.49 -0.38 0.69 16 43 H 0.22 1.41 7.17 -52.49 -0.38 1.03 16 44 H 0.14 1.01 6.84 -52.49 -0.36 0.65 16 45 H 0.16 1.70 4.57 -52.49 -0.24 1.46 16 LS Contribution 370.92 15.07 5.59 5.59 Total: -1.00 -31.86 370.92 -9.80 -41.66 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.55 Total: 8.44 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -5.39 Total: -2.42 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: 0.49 Total: -60.20 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.08 Total: -8.74 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.86 -9.80 -41.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989547653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.167 kcal (2) G-P(sol) polarization free energy of solvation -31.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds