Wall clock time and date at job start Sat Apr 11 2020 06:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.00048 * 2 1 4 4 C 1.54332 * 109.87964 * 121.09735 * 2 1 3 5 5 C 1.55155 * 102.93942 * 141.60779 * 4 2 1 6 6 H 1.09005 * 111.00401 * 206.41929 * 5 4 2 7 7 N 1.46500 * 111.00303 * 82.60706 * 5 4 2 8 8 C 1.36938 * 119.99822 * 154.99376 * 7 5 4 9 9 H 1.07999 * 119.99986 * 0.02562 * 8 7 5 10 10 C 1.38817 * 120.00385 * 179.97438 * 8 7 5 11 11 N 1.31617 * 119.99290 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00263 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.46959 * 90.00462 * 12 10 8 14 14 H 1.48507 * 109.46847 * 210.00221 * 12 10 8 15 15 H 1.48495 * 109.47124 * 329.99936 * 12 10 8 16 16 C 1.55122 * 101.48752 * 324.32991 * 5 4 2 17 17 N 1.47022 * 109.88095 * 238.90065 * 2 1 3 18 18 C 1.34776 * 125.64995 * 61.60768 * 17 2 1 19 19 O 1.21607 * 119.99743 * 5.89466 * 18 17 2 20 20 C 1.47414 * 120.00401 * 185.62035 * 18 17 2 21 21 C 1.41369 * 126.40517 * 7.19424 * 20 18 17 22 22 N 1.30450 * 108.07430 * 179.97438 * 21 20 18 23 23 N 1.39938 * 108.91723 * 0.02562 * 22 21 20 24 24 C 1.39919 * 125.77610 * 179.97438 * 23 22 21 25 25 C 1.39323 * 120.85371 * 179.74771 * 24 23 22 26 26 C 1.38006 * 119.07878 * 179.77474 * 25 24 23 27 27 N 1.31942 * 120.83091 * 0.51121 * 26 25 24 28 28 C 1.31940 * 121.88515 * 359.73915 * 27 26 25 29 29 C 1.38005 * 120.83088 * 359.97438 * 28 27 26 30 30 C 1.34606 * 108.44678 * 359.76823 * 23 22 21 31 31 H 1.09000 * 109.47331 * 179.64327 * 1 2 3 32 32 H 1.08998 * 109.47171 * 299.64279 * 1 2 3 33 33 H 1.08996 * 109.47108 * 59.64316 * 1 2 3 34 34 H 1.09001 * 110.71482 * 259.97070 * 4 2 1 35 35 H 1.08997 * 110.72127 * 23.06444 * 4 2 1 36 36 H 0.96996 * 120.00448 * 334.99972 * 7 5 4 37 37 H 0.97002 * 119.99585 * 179.97438 * 11 10 8 38 38 H 1.08998 * 110.49799 * 278.45105 * 16 5 4 39 39 H 1.09000 * 110.34416 * 156.06201 * 16 5 4 40 40 H 1.08000 * 125.96240 * 359.97438 * 21 20 18 41 41 H 1.08000 * 120.46348 * 0.02562 * 25 24 23 42 42 H 1.07997 * 119.58683 * 180.22299 * 26 25 24 43 43 H 1.08003 * 119.58068 * 179.97438 * 28 27 26 44 44 H 1.08006 * 120.45710 * 180.02562 * 29 28 27 45 45 H 1.07999 * 126.31103 * 180.26508 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 1.2428 5 6 3.2875 -1.5144 0.6924 6 1 3.4851 -2.4112 1.2797 7 7 4.4675 -0.6472 0.6502 8 6 5.7217 -1.1947 0.6997 9 1 5.8409 -2.2659 0.7694 10 6 6.8399 -0.3732 0.6592 11 7 6.6946 0.9321 0.5736 12 14 8.5507 -1.1202 0.7260 13 1 9.0194 -1.4079 -0.6534 14 1 9.4830 -0.1646 1.3764 15 1 8.5098 -2.3818 1.5081 16 6 2.8098 -1.8826 -0.7367 17 7 2.0300 -0.7141 -1.1839 18 6 1.8074 -0.3622 -2.4657 19 8 1.2339 0.6797 -2.7193 20 6 2.2644 -1.2373 -3.5604 21 6 2.8171 -2.5314 -3.4250 22 7 3.0949 -2.9797 -4.6181 23 7 2.7398 -2.0091 -5.5615 24 6 2.8870 -2.1238 -6.9482 25 6 2.4925 -1.0913 -7.7964 26 6 2.6587 -1.2414 -9.1582 27 7 3.1739 -2.3483 -9.6586 28 6 3.5546 -3.3499 -8.8888 29 6 3.4270 -3.2755 -7.5167 30 6 2.2283 -0.9484 -4.9095 31 1 -0.3634 -1.0276 -0.0064 32 1 -0.3633 0.5083 0.8931 33 1 -0.3633 0.5193 -0.8867 34 1 2.3529 -0.0460 2.0201 35 1 1.3039 -1.4437 1.6202 36 1 4.3605 0.3148 0.5873 37 1 7.4759 1.5063 0.5457 38 1 2.1801 -2.7719 -0.7114 39 1 3.6654 -2.0414 -1.3931 40 1 2.9807 -3.0572 -2.4959 41 1 2.0663 -0.1844 -7.3937 42 1 2.3591 -0.4448 -9.8230 43 1 3.9714 -4.2392 -9.3382 44 1 3.7410 -4.0989 -6.8922 45 1 1.8591 -0.0385 -5.3591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989615634.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:22 Heat of formation + Delta-G solvation = 113.080023 kcal Electronic energy + Delta-G solvation = -29121.133492 eV Core-core repulsion = 25141.417416 eV Total energy + Delta-G solvation = -3979.716076 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.97582 -40.30757 -39.51998 -37.23425 -34.71843 -34.00742 -31.93004 -31.82318 -31.35514 -30.65448 -29.78260 -28.48280 -25.70797 -24.94712 -24.15724 -23.80508 -22.85872 -21.41930 -20.96327 -19.91601 -19.35348 -18.25379 -17.32149 -16.78989 -16.34952 -16.12739 -15.88589 -15.74504 -15.42313 -14.78522 -14.66811 -14.30750 -14.13396 -14.11210 -13.81562 -13.59255 -13.50855 -13.11705 -12.84003 -12.63424 -12.27864 -12.17922 -11.89107 -11.68325 -11.22613 -11.21671 -11.14807 -10.95441 -10.74944 -10.63122 -10.33632 -10.04837 -10.02378 -9.75842 -9.66107 -9.61128 -9.53121 -9.06432 -8.70807 -8.22450 -7.07651 -5.85608 -3.16314 0.30129 0.67092 1.71823 1.89724 2.12587 3.27772 3.38063 3.41477 3.43258 3.45288 3.61943 4.01207 4.04198 4.29056 4.50247 4.55016 4.56820 4.73117 4.81707 5.01497 5.09580 5.12943 5.16172 5.28713 5.32939 5.36545 5.46681 5.50574 5.55782 5.65113 5.66172 5.76558 5.85086 5.95471 6.10508 6.13564 6.17817 6.21592 6.38054 6.39722 6.55704 6.65704 6.67187 6.79960 7.26420 7.53752 7.60837 7.91442 8.31448 8.50868 9.43485 9.98567 10.32744 11.36136 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009726 B = 0.003265 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.106679 B = 8574.167769 C =10544.704566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.140 3.860 3 H 0.076 0.924 4 C -0.139 4.139 5 C 0.170 3.830 6 H 0.076 0.924 7 N -0.710 5.710 8 C -0.249 4.249 9 H 0.073 0.927 10 C -0.008 4.008 11 N -0.927 5.927 12 Si 0.906 3.094 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.280 1.280 16 C 0.056 3.944 17 N -0.592 5.592 18 C 0.609 3.391 19 O -0.556 6.556 20 C -0.257 4.257 21 C 0.093 3.907 22 N -0.290 5.290 23 N -0.323 5.323 24 C 0.209 3.791 25 C -0.197 4.197 26 C 0.128 3.872 27 N -0.495 5.495 28 C 0.124 3.876 29 C -0.173 4.173 30 C 0.122 3.878 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.386 0.614 37 H 0.256 0.744 38 H 0.059 0.941 39 H 0.085 0.915 40 H 0.210 0.790 41 H 0.145 0.855 42 H 0.167 0.833 43 H 0.166 0.834 44 H 0.151 0.849 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.371 -7.297 -12.167 18.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.037 3.963 3 H 0.094 0.906 4 C -0.178 4.178 5 C 0.057 3.943 6 H 0.094 0.906 7 N -0.349 5.349 8 C -0.380 4.380 9 H 0.091 0.909 10 C -0.204 4.204 11 N -0.574 5.574 12 Si 0.737 3.263 13 H -0.217 1.217 14 H -0.217 1.217 15 H -0.206 1.206 16 C -0.070 4.070 17 N -0.323 5.323 18 C 0.398 3.602 19 O -0.436 6.436 20 C -0.271 4.271 21 C -0.096 4.096 22 N -0.107 5.107 23 N -0.096 5.096 24 C 0.108 3.892 25 C -0.220 4.220 26 C -0.029 4.029 27 N -0.205 5.205 28 C -0.033 4.033 29 C -0.195 4.195 30 C -0.023 4.023 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.220 0.780 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.226 0.774 41 H 0.163 0.837 42 H 0.184 0.816 43 H 0.183 0.817 44 H 0.169 0.831 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -11.918 -7.862 -13.961 19.969 hybrid contribution 0.666 0.748 1.426 1.743 sum -11.252 -7.113 -12.534 18.285 Atomic orbital electron populations 1.22129 0.95428 1.01740 1.02417 1.21480 0.93453 0.96873 0.84461 0.90637 1.23094 0.98273 1.00096 0.96382 1.21363 0.87067 0.94517 0.91383 0.90642 1.42331 1.00044 1.05529 1.87020 1.19226 0.83157 0.92015 1.43631 0.90907 1.24772 0.97964 0.95348 1.02359 1.69668 1.29084 1.02165 1.56458 0.86215 0.84523 0.77988 0.77576 1.21718 1.21733 1.20590 1.23796 0.94506 0.87198 1.01492 1.48104 1.51578 1.28487 1.04154 1.16655 0.78652 0.84192 0.80730 1.90734 1.44736 1.24591 1.83557 1.20386 1.15426 0.98062 0.93206 1.25050 0.93885 0.93906 0.96730 1.77288 1.23502 1.12325 0.97541 1.45593 1.46683 1.13121 1.04235 1.17834 0.96617 0.95672 0.79078 1.21958 1.05462 0.99698 0.94909 1.22670 0.93204 0.95160 0.91866 1.67719 1.11165 1.01020 1.40560 1.22758 0.94250 0.97080 0.89192 1.21981 1.02257 0.98226 0.97024 1.22977 0.94854 0.92561 0.91904 0.92812 0.91901 0.91795 0.89725 0.90703 0.77955 0.93365 0.92313 0.89645 0.77359 0.83737 0.81601 0.81687 0.83093 0.79090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.10 37.16 0.34 -1.77 16 2 C 0.14 2.19 3.42 -66.95 -0.23 1.96 16 3 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 4 C -0.14 -2.02 6.07 -24.89 -0.15 -2.17 16 5 C 0.17 2.93 3.72 -65.67 -0.24 2.68 16 6 H 0.08 1.24 8.09 -51.93 -0.42 0.82 16 7 N -0.71 -16.40 5.25 -51.24 -0.27 -16.67 16 8 C -0.25 -6.46 9.96 -15.06 -0.15 -6.61 16 9 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 10 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 11 N -0.93 -27.32 13.06 55.49 0.72 -26.59 16 12 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 C 0.06 0.87 4.82 -2.41 -0.01 0.86 16 17 N -0.59 -9.79 3.06 -164.14 -0.50 -10.29 16 18 C 0.61 10.73 7.58 -12.52 -0.09 10.63 16 19 O -0.56 -11.03 16.17 5.27 0.09 -10.95 16 20 C -0.26 -3.98 6.05 -105.05 -0.64 -4.62 16 21 C 0.09 1.34 10.27 -16.95 -0.17 1.16 16 22 N -0.29 -4.21 11.87 30.88 0.37 -3.84 16 23 N -0.32 -4.31 3.76 -10.03 -0.04 -4.35 16 24 C 0.21 2.38 6.73 -83.36 -0.56 1.82 16 25 C -0.20 -1.79 9.52 -39.26 -0.37 -2.16 16 26 C 0.13 1.07 11.17 -17.59 -0.20 0.87 16 27 N -0.49 -4.88 10.36 -13.32 -0.14 -5.02 16 28 C 0.12 1.10 11.17 -17.59 -0.20 0.90 16 29 C -0.17 -1.76 9.73 -39.26 -0.38 -2.14 16 30 C 0.12 1.66 10.65 -16.42 -0.17 1.48 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.96 7.08 -51.93 -0.37 0.59 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.07 0.89 7.85 -51.93 -0.41 0.48 16 36 H 0.39 9.87 7.86 -40.82 -0.32 9.55 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.06 0.72 7.73 -51.93 -0.40 0.32 16 39 H 0.09 1.45 5.91 -51.93 -0.31 1.14 16 40 H 0.21 2.60 4.87 -52.49 -0.26 2.35 16 41 H 0.14 1.01 6.85 -52.49 -0.36 0.65 16 42 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.17 0.97 8.06 -52.48 -0.42 0.55 16 44 H 0.15 1.49 7.78 -52.48 -0.41 1.09 16 45 H 0.19 2.07 7.09 -52.49 -0.37 1.70 16 LS Contribution 375.80 15.07 5.66 5.66 Total: -1.00 -33.54 375.80 -8.17 -41.71 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -5.70 Total: 11.06 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -3.33 Total: 2.59 kcal Atomic # 7 Polarization: -66.91 SS G_CDS: 0.14 Total: -66.77 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.54 -8.17 -41.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989615634.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.790 kcal (2) G-P(sol) polarization free energy of solvation -33.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds