Wall clock time and date at job start Sat Apr 11 2020 06:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.00048 * 2 1 4 4 C 1.54332 * 109.87964 * 121.09735 * 2 1 3 5 5 C 1.55155 * 102.93942 * 141.60779 * 4 2 1 6 6 H 1.09005 * 111.00401 * 206.41929 * 5 4 2 7 7 N 1.46500 * 111.00303 * 82.60706 * 5 4 2 8 8 C 1.36938 * 119.99822 * 154.99376 * 7 5 4 9 9 H 1.07999 * 119.99986 * 0.02562 * 8 7 5 10 10 C 1.38817 * 120.00385 * 179.97438 * 8 7 5 11 11 N 1.31617 * 119.99290 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00263 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.46959 * 90.00462 * 12 10 8 14 14 H 1.48507 * 109.46847 * 210.00221 * 12 10 8 15 15 H 1.48495 * 109.47124 * 329.99936 * 12 10 8 16 16 C 1.55122 * 101.48752 * 324.32991 * 5 4 2 17 17 N 1.47022 * 109.88095 * 238.90065 * 2 1 3 18 18 C 1.34776 * 125.64995 * 61.60768 * 17 2 1 19 19 O 1.21607 * 119.99743 * 5.89466 * 18 17 2 20 20 C 1.47414 * 120.00401 * 185.62035 * 18 17 2 21 21 C 1.41369 * 126.40517 * 7.19424 * 20 18 17 22 22 N 1.30450 * 108.07430 * 179.97438 * 21 20 18 23 23 N 1.39938 * 108.91723 * 0.02562 * 22 21 20 24 24 C 1.39919 * 125.77610 * 179.97438 * 23 22 21 25 25 C 1.39323 * 120.85371 * 179.74771 * 24 23 22 26 26 C 1.38006 * 119.07878 * 179.77474 * 25 24 23 27 27 N 1.31942 * 120.83091 * 0.51121 * 26 25 24 28 28 C 1.31940 * 121.88515 * 359.73915 * 27 26 25 29 29 C 1.38005 * 120.83088 * 359.97438 * 28 27 26 30 30 C 1.34606 * 108.44678 * 359.76823 * 23 22 21 31 31 H 1.09000 * 109.47331 * 179.64327 * 1 2 3 32 32 H 1.08998 * 109.47171 * 299.64279 * 1 2 3 33 33 H 1.08996 * 109.47108 * 59.64316 * 1 2 3 34 34 H 1.09001 * 110.71482 * 259.97070 * 4 2 1 35 35 H 1.08997 * 110.72127 * 23.06444 * 4 2 1 36 36 H 0.96996 * 120.00448 * 334.99972 * 7 5 4 37 37 H 0.97002 * 119.99585 * 179.97438 * 11 10 8 38 38 H 1.08998 * 110.49799 * 278.45105 * 16 5 4 39 39 H 1.09000 * 110.34416 * 156.06201 * 16 5 4 40 40 H 1.08000 * 125.96240 * 359.97438 * 21 20 18 41 41 H 1.08000 * 120.46348 * 0.02562 * 25 24 23 42 42 H 1.07997 * 119.58683 * 180.22299 * 26 25 24 43 43 H 1.08003 * 119.58068 * 179.97438 * 28 27 26 44 44 H 1.08006 * 120.45710 * 180.02562 * 29 28 27 45 45 H 1.07999 * 126.31103 * 180.26508 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 1.2428 5 6 3.2875 -1.5144 0.6924 6 1 3.4851 -2.4112 1.2797 7 7 4.4675 -0.6472 0.6502 8 6 5.7217 -1.1947 0.6997 9 1 5.8409 -2.2659 0.7694 10 6 6.8399 -0.3732 0.6592 11 7 6.6946 0.9321 0.5736 12 14 8.5507 -1.1202 0.7260 13 1 9.0194 -1.4079 -0.6534 14 1 9.4830 -0.1646 1.3764 15 1 8.5098 -2.3818 1.5081 16 6 2.8098 -1.8826 -0.7367 17 7 2.0300 -0.7141 -1.1839 18 6 1.8074 -0.3622 -2.4657 19 8 1.2339 0.6797 -2.7193 20 6 2.2644 -1.2373 -3.5604 21 6 2.8171 -2.5314 -3.4250 22 7 3.0949 -2.9797 -4.6181 23 7 2.7398 -2.0091 -5.5615 24 6 2.8870 -2.1238 -6.9482 25 6 2.4925 -1.0913 -7.7964 26 6 2.6587 -1.2414 -9.1582 27 7 3.1739 -2.3483 -9.6586 28 6 3.5546 -3.3499 -8.8888 29 6 3.4270 -3.2755 -7.5167 30 6 2.2283 -0.9484 -4.9095 31 1 -0.3634 -1.0276 -0.0064 32 1 -0.3633 0.5083 0.8931 33 1 -0.3633 0.5193 -0.8867 34 1 2.3529 -0.0460 2.0201 35 1 1.3039 -1.4437 1.6202 36 1 4.3605 0.3148 0.5873 37 1 7.4759 1.5063 0.5457 38 1 2.1801 -2.7719 -0.7114 39 1 3.6654 -2.0414 -1.3931 40 1 2.9807 -3.0572 -2.4959 41 1 2.0663 -0.1844 -7.3937 42 1 2.3591 -0.4448 -9.8230 43 1 3.9714 -4.2392 -9.3382 44 1 3.7410 -4.0989 -6.8922 45 1 1.8591 -0.0385 -5.3591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989615634.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:22 Heat of formation + Delta-G solvation = 91.017356 kcal Electronic energy + Delta-G solvation = -29122.090201 eV Core-core repulsion = 25141.417416 eV Total energy + Delta-G solvation = -3980.672785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.99689 -41.22056 -40.66507 -38.62521 -35.79218 -35.61102 -33.21437 -32.95971 -32.60309 -31.61049 -30.80281 -30.10492 -26.89725 -25.97743 -25.65147 -24.93646 -23.97108 -22.39990 -22.13887 -21.20954 -20.45598 -19.39996 -19.16907 -17.83042 -17.48918 -17.07828 -16.85923 -16.74904 -16.48582 -16.31472 -15.96389 -15.42368 -15.39483 -15.14293 -14.93734 -14.81684 -14.73872 -14.40820 -14.15838 -13.82276 -13.48404 -13.17617 -13.10317 -12.95425 -12.88545 -12.67302 -12.28487 -12.20661 -12.19631 -12.13637 -11.93923 -11.60872 -11.43956 -11.05704 -10.89729 -10.71415 -10.56461 -10.34064 -9.78227 -9.53273 -8.94988 -7.92316 -5.20531 -0.58125 -0.01298 0.68422 0.94111 1.05388 1.48469 1.49004 1.57190 2.03876 2.35158 2.57151 2.70509 3.08922 3.39276 3.41150 3.45775 3.59483 3.69847 3.78914 3.88883 3.94788 3.98256 4.00227 4.13149 4.18284 4.33925 4.38763 4.42946 4.52365 4.60997 4.72975 4.73945 4.78548 4.79461 4.85568 4.97661 5.14368 5.18008 5.23115 5.27197 5.40246 5.41100 5.56412 5.57933 5.74003 6.21098 6.28863 6.61589 6.84457 7.18713 7.35588 8.11719 8.32738 9.31143 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009726 B = 0.003265 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.106679 B = 8574.167769 C =10544.704566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.135 3.865 3 H 0.040 0.960 4 C -0.123 4.123 5 C 0.156 3.844 6 H 0.094 0.906 7 N -0.725 5.725 8 C -0.232 4.232 9 H 0.088 0.912 10 C -0.077 4.077 11 N -0.971 5.971 12 Si 0.966 3.034 13 H -0.295 1.295 14 H -0.302 1.302 15 H -0.262 1.262 16 C 0.065 3.935 17 N -0.595 5.595 18 C 0.602 3.398 19 O -0.589 6.589 20 C -0.286 4.286 21 C 0.093 3.907 22 N -0.306 5.306 23 N -0.320 5.320 24 C 0.177 3.823 25 C -0.194 4.194 26 C 0.129 3.871 27 N -0.510 5.510 28 C 0.126 3.874 29 C -0.180 4.180 30 C 0.130 3.870 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.369 0.631 37 H 0.247 0.753 38 H 0.103 0.897 39 H 0.069 0.931 40 H 0.224 0.776 41 H 0.164 0.836 42 H 0.198 0.802 43 H 0.193 0.807 44 H 0.149 0.851 45 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.489 -9.379 -12.865 20.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.032 3.968 3 H 0.058 0.942 4 C -0.162 4.162 5 C 0.046 3.954 6 H 0.111 0.889 7 N -0.363 5.363 8 C -0.363 4.363 9 H 0.106 0.894 10 C -0.269 4.269 11 N -0.622 5.622 12 Si 0.796 3.204 13 H -0.223 1.223 14 H -0.229 1.229 15 H -0.186 1.186 16 C -0.060 4.060 17 N -0.326 5.326 18 C 0.393 3.607 19 O -0.472 6.472 20 C -0.300 4.300 21 C -0.095 4.095 22 N -0.123 5.123 23 N -0.092 5.092 24 C 0.077 3.923 25 C -0.216 4.216 26 C -0.027 4.027 27 N -0.220 5.220 28 C -0.031 4.031 29 C -0.202 4.202 30 C -0.017 4.017 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.133 0.867 36 H 0.200 0.800 37 H 0.056 0.944 38 H 0.121 0.879 39 H 0.087 0.913 40 H 0.240 0.760 41 H 0.181 0.819 42 H 0.215 0.785 43 H 0.209 0.791 44 H 0.167 0.833 45 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -13.067 -10.037 -14.659 22.054 hybrid contribution 0.925 1.353 1.526 2.239 sum -12.142 -8.685 -13.134 19.883 Atomic orbital electron populations 1.22023 0.93235 1.02867 1.02359 1.21552 0.95145 0.95290 0.84808 0.94157 1.23020 0.97712 1.00110 0.95356 1.21722 0.86151 0.94595 0.92926 0.88858 1.42544 1.01138 1.05384 1.87235 1.19699 0.84211 0.92563 1.39871 0.89439 1.25519 1.01492 0.95730 1.04200 1.69836 1.29159 1.03525 1.59699 0.85242 0.80453 0.77581 0.77120 1.22313 1.22946 1.18614 1.23719 0.94743 0.88278 0.99248 1.48215 1.51393 1.28803 1.04178 1.16992 0.78265 0.84060 0.81417 1.90700 1.46411 1.26027 1.84083 1.20340 1.17576 0.98677 0.93422 1.25221 0.93525 0.93526 0.97248 1.77230 1.24114 1.13160 0.97791 1.45727 1.45935 1.12631 1.04929 1.18258 0.98520 0.97186 0.78353 1.22243 1.04667 0.99714 0.94992 1.23219 0.92062 0.95435 0.92020 1.67800 1.11494 1.01666 1.41027 1.23172 0.93521 0.97770 0.88601 1.22093 1.02422 0.97983 0.97687 1.23332 0.93677 0.93105 0.91570 0.90933 0.89896 0.93956 0.90689 0.86669 0.79952 0.94434 0.87884 0.91308 0.76042 0.81863 0.78482 0.79051 0.83311 0.76961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.10 71.98 0.66 -3.00 16 2 C 0.14 4.14 3.42 45.34 0.16 4.30 16 3 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 4 C -0.12 -3.32 6.07 31.79 0.19 -3.13 16 5 C 0.16 5.10 3.72 46.46 0.17 5.27 16 6 H 0.09 2.76 8.09 -2.38 -0.02 2.74 16 7 N -0.73 -33.47 5.25 -316.02 -1.66 -35.13 16 8 C -0.23 -11.89 9.96 84.03 0.84 -11.05 16 9 H 0.09 4.15 7.83 -2.91 -0.02 4.13 16 10 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 11 N -0.97 -59.15 13.06 21.65 0.28 -58.86 16 12 Si 0.97 45.14 29.55 68.60 2.03 47.17 16 13 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 14 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 15 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 16 C 0.07 1.88 4.82 86.93 0.42 2.30 16 17 N -0.60 -19.35 3.06 -791.47 -2.42 -21.78 16 18 C 0.60 21.39 7.58 86.66 0.66 22.04 16 19 O -0.59 -23.97 16.17 -4.05 -0.07 -24.04 16 20 C -0.29 -8.82 6.05 -20.14 -0.12 -8.94 16 21 C 0.09 2.61 10.27 85.67 0.88 3.49 16 22 N -0.31 -8.72 11.87 -56.22 -0.67 -9.38 16 23 N -0.32 -8.32 3.76 -185.65 -0.70 -9.02 16 24 C 0.18 3.84 6.73 38.37 0.26 4.10 16 25 C -0.19 -3.16 9.52 22.48 0.21 -2.94 16 26 C 0.13 1.86 11.17 84.62 0.95 2.81 16 27 N -0.51 -9.00 10.36 -196.06 -2.03 -11.03 16 28 C 0.13 2.02 11.17 84.62 0.95 2.96 16 29 C -0.18 -3.50 9.73 22.48 0.22 -3.28 16 30 C 0.13 3.46 10.65 84.21 0.90 4.35 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.04 1.25 7.08 -2.39 -0.02 1.23 16 34 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.12 2.22 7.85 -2.39 -0.02 2.20 16 36 H 0.37 19.42 7.86 -92.71 -0.73 18.69 16 37 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 38 H 0.10 2.12 7.73 -2.39 -0.02 2.10 16 39 H 0.07 2.26 5.91 -2.39 -0.01 2.24 16 40 H 0.22 5.23 4.87 -2.91 -0.01 5.21 16 41 H 0.16 1.93 6.85 -2.91 -0.02 1.91 16 42 H 0.20 1.45 8.06 -2.91 -0.02 1.42 16 43 H 0.19 1.85 8.06 -2.91 -0.02 1.82 16 44 H 0.15 2.88 7.78 -2.91 -0.02 2.86 16 45 H 0.21 4.43 7.09 -2.91 -0.02 4.41 16 Total: -1.00 -75.18 375.80 2.87 -72.31 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: 0.31 Total: 34.33 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 7.79 Total: 15.43 kcal Atomic # 7 Polarization: -138.01 SS G_CDS: -7.20 Total: -145.21 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.07 Total: -24.04 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -75.18 2.87 -72.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989615634.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.330 kcal (2) G-P(sol) polarization free energy of solvation -75.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds