Wall clock time and date at job start Sat Apr 11 2020 06:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09010 * 109.99716 * 2 1 4 4 C 1.54331 * 109.99412 * 238.96165 * 2 1 3 5 5 C 1.55162 * 103.02111 * 218.66745 * 4 2 1 6 6 H 1.08993 * 111.00710 * 153.38012 * 5 4 2 7 7 N 1.46505 * 111.00089 * 277.23112 * 5 4 2 8 8 C 1.36941 * 119.99846 * 198.64576 * 7 5 4 9 9 H 1.07998 * 119.99458 * 0.02562 * 8 7 5 10 10 C 1.38810 * 119.99678 * 179.97438 * 8 7 5 11 11 N 1.31624 * 119.99694 * 180.02562 * 10 8 7 12 12 Si 1.86789 * 120.00336 * 0.02562 * 10 8 7 13 13 H 1.48507 * 109.47201 * 89.99796 * 12 10 8 14 14 H 1.48506 * 109.47443 * 209.99983 * 12 10 8 15 15 H 1.48504 * 109.47166 * 329.99874 * 12 10 8 16 16 C 1.54912 * 101.58044 * 35.30450 * 5 4 2 17 17 N 1.47030 * 109.88106 * 121.09072 * 2 1 3 18 18 C 1.34770 * 125.64669 * 298.40062 * 17 2 1 19 19 O 1.21604 * 120.00507 * 1.14442 * 18 17 2 20 20 C 1.47422 * 119.99506 * 181.14995 * 18 17 2 21 21 C 1.41365 * 126.41032 * 351.40228 * 20 18 17 22 22 N 1.30450 * 108.07636 * 179.76239 * 21 20 18 23 23 N 1.39936 * 108.91609 * 0.38290 * 22 21 20 24 24 C 1.39915 * 125.77350 * 179.87854 * 23 22 21 25 25 C 1.39323 * 120.85929 * 359.68723 * 24 23 22 26 26 C 1.38004 * 119.07989 * 180.02562 * 25 24 23 27 27 N 1.31934 * 120.83451 * 0.27670 * 26 25 24 28 28 C 1.31937 * 121.88646 * 359.42819 * 27 26 25 29 29 C 1.38010 * 120.82710 * 0.57179 * 28 27 26 30 30 C 1.34607 * 108.44990 * 359.61142 * 23 22 21 31 31 H 1.08996 * 109.47738 * 300.35952 * 1 2 3 32 32 H 1.09008 * 109.46953 * 60.36312 * 1 2 3 33 33 H 1.09001 * 109.47176 * 180.35538 * 1 2 3 34 34 H 1.08998 * 110.85379 * 100.19899 * 4 2 1 35 35 H 1.08999 * 110.66993 * 337.04372 * 4 2 1 36 36 H 0.96995 * 119.99988 * 18.65028 * 7 5 4 37 37 H 0.96993 * 120.00051 * 180.02562 * 11 10 8 38 38 H 1.08998 * 110.36421 * 204.15372 * 16 5 4 39 39 H 1.08995 * 110.36476 * 81.83429 * 16 5 4 40 40 H 1.08001 * 125.96031 * 359.97275 * 21 20 18 41 41 H 1.08004 * 120.45731 * 0.02562 * 25 24 23 42 42 H 1.08003 * 119.57882 * 179.97438 * 26 25 24 43 43 H 1.07996 * 119.59007 * 180.26665 * 28 27 26 44 44 H 1.08002 * 120.45779 * 179.69674 * 29 28 27 45 45 H 1.07999 * 126.31506 * 180.25200 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 6 2.0576 -0.7478 -1.2426 5 6 3.2864 -1.5184 -0.6913 6 1 3.4807 -2.4155 -1.2789 7 7 4.4699 -0.6561 -0.6462 8 6 5.7189 -1.2115 -0.5630 9 1 5.8313 -2.2851 -0.5310 10 6 6.8403 -0.3945 -0.5208 11 7 8.0408 -0.9283 -0.4413 12 14 6.6457 1.4624 -0.5768 13 1 6.5167 1.9886 0.8059 14 1 7.8369 2.0657 -1.2269 15 1 5.4288 1.8094 -1.3540 16 6 2.8098 -1.8825 0.7370 17 7 2.0300 -0.7140 1.1840 18 6 1.8072 -0.3619 2.4657 19 8 1.1239 0.6116 2.7190 20 6 2.3921 -1.1570 3.5608 21 6 3.0585 -2.3972 3.4340 22 7 3.4340 -2.7785 4.6237 23 7 3.0248 -1.8199 5.5574 24 6 3.2427 -1.8779 6.9383 25 6 3.9135 -2.9563 7.5112 26 6 4.1078 -2.9762 8.8773 27 7 3.6629 -1.9944 9.6380 28 6 3.0283 -0.9539 9.1327 29 6 2.7939 -0.8590 7.7759 30 6 2.3913 -0.8297 4.9016 31 1 -0.3634 0.5194 0.8867 32 1 -0.3633 0.5082 -0.8933 33 1 -0.3633 -1.0277 0.0064 34 1 2.3598 -0.0450 -2.0191 35 1 1.3067 -1.4406 -1.6225 36 1 4.3689 0.3081 -0.6752 37 1 8.8244 -0.3575 -0.4114 38 1 3.6654 -2.0411 1.3934 39 1 2.1801 -2.7718 0.7116 40 1 3.2300 -2.9337 2.5124 41 1 4.2765 -3.7654 6.8946 42 1 4.6265 -3.8084 9.3300 43 1 2.6836 -0.1689 9.7894 44 1 2.2696 -0.0069 7.3692 45 1 1.9620 0.0576 5.3432 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989615640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:29 Heat of formation + Delta-G solvation = 120.235304 kcal Electronic energy + Delta-G solvation = -29289.025194 eV Core-core repulsion = 25309.619394 eV Total energy + Delta-G solvation = -3979.405799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.98696 -40.33101 -39.62651 -37.37794 -34.72886 -34.14770 -32.01458 -31.84531 -31.53540 -30.65849 -29.80959 -29.02228 -25.85805 -24.97792 -24.15771 -23.64338 -22.79207 -21.44642 -20.99905 -20.02763 -19.41991 -18.33012 -17.72434 -16.83906 -16.38522 -16.21596 -15.93425 -15.75302 -15.45198 -14.88565 -14.64268 -14.35712 -14.14717 -14.06017 -14.05424 -13.79606 -13.51387 -13.05903 -12.79858 -12.76349 -12.35650 -12.19468 -12.02596 -11.98573 -11.46771 -11.22484 -11.18889 -11.03916 -10.86027 -10.63125 -10.41925 -10.12405 -10.01766 -9.68920 -9.68281 -9.65127 -9.53680 -9.10552 -8.72722 -8.33465 -7.38779 -5.87355 -3.24459 0.30174 0.68089 1.69627 1.90004 2.12739 3.17423 3.31571 3.35765 3.40942 3.42060 3.54160 4.01039 4.04921 4.28555 4.50894 4.54023 4.55892 4.67923 4.78193 4.95806 4.98754 5.06994 5.12426 5.13355 5.24759 5.29512 5.37814 5.45169 5.46447 5.53097 5.63897 5.69267 5.73536 5.86293 5.96864 6.03210 6.11460 6.18862 6.25795 6.27638 6.42456 6.51016 6.65476 6.67807 7.27222 7.54678 7.79318 7.86504 8.31371 8.40805 9.08542 9.81459 9.99539 11.30170 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010574 B = 0.003369 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.252412 B = 8308.754081 C = 9792.906165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.139 3.861 3 H 0.072 0.928 4 C -0.140 4.140 5 C 0.175 3.825 6 H 0.081 0.919 7 N -0.736 5.736 8 C -0.252 4.252 9 H 0.093 0.907 10 C 0.012 3.988 11 N -0.928 5.928 12 Si 0.881 3.119 13 H -0.285 1.285 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.054 3.946 17 N -0.594 5.594 18 C 0.609 3.391 19 O -0.557 6.557 20 C -0.261 4.261 21 C 0.092 3.908 22 N -0.287 5.287 23 N -0.323 5.323 24 C 0.208 3.792 25 C -0.172 4.172 26 C 0.124 3.876 27 N -0.495 5.495 28 C 0.128 3.872 29 C -0.198 4.198 30 C 0.123 3.877 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.363 0.637 37 H 0.261 0.739 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.214 0.786 41 H 0.152 0.848 42 H 0.167 0.833 43 H 0.167 0.833 44 H 0.144 0.856 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.742 -2.897 11.800 19.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.036 3.964 3 H 0.090 0.910 4 C -0.179 4.179 5 C 0.063 3.937 6 H 0.099 0.901 7 N -0.378 5.378 8 C -0.381 4.381 9 H 0.111 0.889 10 C -0.185 4.185 11 N -0.575 5.575 12 Si 0.711 3.289 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.202 1.202 16 C -0.072 4.072 17 N -0.326 5.326 18 C 0.399 3.601 19 O -0.437 6.437 20 C -0.274 4.274 21 C -0.097 4.097 22 N -0.103 5.103 23 N -0.096 5.096 24 C 0.107 3.893 25 C -0.194 4.194 26 C -0.032 4.032 27 N -0.204 5.204 28 C -0.030 4.030 29 C -0.221 4.221 30 C -0.023 4.023 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.196 0.804 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.082 0.918 40 H 0.230 0.770 41 H 0.170 0.830 42 H 0.184 0.816 43 H 0.184 0.816 44 H 0.162 0.838 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -14.134 -3.469 13.629 19.939 hybrid contribution -0.385 2.074 -1.489 2.581 sum -14.519 -1.396 12.140 18.977 Atomic orbital electron populations 1.22133 0.95079 1.01988 1.02567 1.21495 0.93900 0.96477 0.84550 0.91033 1.23082 0.98320 1.00167 0.96337 1.21297 0.86121 0.94518 0.91769 0.90108 1.42695 1.01975 1.04012 1.89093 1.19027 0.81436 0.93880 1.43795 0.88882 1.24647 0.95126 0.97240 1.01461 1.69690 0.97080 1.34210 1.56492 0.86621 0.77001 0.87410 0.77897 1.21148 1.21617 1.20238 1.23781 0.94955 0.87336 1.01089 1.48153 1.51708 1.28515 1.04185 1.16680 0.79593 0.83161 0.80695 1.90727 1.40868 1.28545 1.83584 1.20342 1.13786 0.99916 0.93378 1.25199 0.93255 0.94506 0.96740 1.77328 1.22672 1.12285 0.98017 1.45619 1.42438 1.16767 1.04729 1.17835 0.96394 0.95820 0.79220 1.22000 1.01193 0.99125 0.97035 1.22766 0.94783 0.96393 0.89292 1.67714 1.10479 1.01865 1.40376 1.22662 0.93098 0.95416 0.91777 1.21947 1.05201 0.99816 0.95104 1.22958 0.94138 0.93419 0.91788 0.91413 0.91986 0.92651 0.89808 0.90150 0.80391 0.92932 0.88860 0.91809 0.76989 0.83002 0.81633 0.81633 0.83810 0.79151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.11 37.15 0.34 -1.65 16 2 C 0.14 2.02 3.46 -66.95 -0.23 1.78 16 3 H 0.07 1.16 8.14 -51.92 -0.42 0.73 16 4 C -0.14 -1.87 6.05 -24.89 -0.15 -2.02 16 5 C 0.17 2.85 3.69 -65.77 -0.24 2.61 16 6 H 0.08 1.28 8.13 -51.93 -0.42 0.85 16 7 N -0.74 -15.85 5.07 -51.35 -0.26 -16.11 16 8 C -0.25 -6.57 10.47 -15.06 -0.16 -6.73 16 9 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 10 C 0.01 0.34 5.50 -17.43 -0.10 0.24 16 11 N -0.93 -28.17 13.97 55.49 0.78 -27.39 16 12 Si 0.88 21.77 27.73 -169.99 -4.71 17.06 16 13 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 15 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 16 C 0.05 0.80 4.96 -2.53 -0.01 0.78 16 17 N -0.59 -9.32 3.06 -164.27 -0.50 -9.82 16 18 C 0.61 10.27 7.64 -12.52 -0.10 10.18 16 19 O -0.56 -10.47 15.90 5.27 0.08 -10.39 16 20 C -0.26 -3.97 6.06 -105.05 -0.64 -4.61 16 21 C 0.09 1.34 10.29 -16.95 -0.17 1.16 16 22 N -0.29 -4.27 11.87 30.88 0.37 -3.91 16 23 N -0.32 -4.35 3.76 -10.03 -0.04 -4.38 16 24 C 0.21 2.40 6.73 -83.36 -0.56 1.84 16 25 C -0.17 -1.80 9.73 -39.26 -0.38 -2.18 16 26 C 0.12 1.13 11.17 -17.59 -0.20 0.93 16 27 N -0.49 -4.95 10.36 -13.32 -0.14 -5.09 16 28 C 0.13 1.08 11.18 -17.59 -0.20 0.88 16 29 C -0.20 -1.80 9.52 -39.26 -0.37 -2.17 16 30 C 0.12 1.64 10.65 -16.41 -0.17 1.46 16 31 H 0.07 0.97 6.84 -51.93 -0.36 0.62 16 32 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.08 0.87 7.85 -51.93 -0.41 0.46 16 36 H 0.36 8.03 5.68 -40.82 -0.23 7.80 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.09 1.53 5.28 -51.93 -0.27 1.26 16 39 H 0.06 0.75 8.02 -51.93 -0.42 0.33 16 40 H 0.21 2.74 4.81 -52.49 -0.25 2.49 16 41 H 0.15 1.57 7.78 -52.48 -0.41 1.16 16 42 H 0.17 1.02 8.06 -52.48 -0.42 0.60 16 43 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 44 H 0.14 1.00 6.85 -52.49 -0.36 0.64 16 45 H 0.19 2.01 7.09 -52.49 -0.37 1.64 16 LS Contribution 372.04 15.07 5.61 5.61 Total: -1.00 -34.23 372.04 -7.79 -42.03 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -5.63 Total: 9.88 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -3.34 Total: 2.52 kcal Atomic # 7 Polarization: -66.91 SS G_CDS: 0.20 Total: -66.70 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.39 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.06 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.23 -7.79 -42.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989615640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.262 kcal (2) G-P(sol) polarization free energy of solvation -34.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds