Wall clock time and date at job start Sat Apr 11 2020 06:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.99394 * 2 1 4 4 C 1.54334 * 109.99170 * 238.96102 * 2 1 3 5 5 C 1.55155 * 103.02023 * 218.66446 * 4 2 1 6 6 H 1.08997 * 111.00406 * 153.38816 * 5 4 2 7 7 N 1.46499 * 111.03758 * 277.22313 * 5 4 2 8 8 C 1.36938 * 119.99980 * 198.66932 * 7 5 4 9 9 H 1.08003 * 120.00072 * 359.97438 * 8 7 5 10 10 C 1.38811 * 120.00182 * 179.97438 * 8 7 5 11 11 N 1.31622 * 120.00078 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99987 * 0.02562 * 10 8 7 13 13 H 1.48503 * 109.46996 * 89.99477 * 12 10 8 14 14 H 1.48500 * 109.46976 * 209.99422 * 12 10 8 15 15 H 1.48500 * 109.47137 * 329.99471 * 12 10 8 16 16 C 1.54905 * 101.58043 * 35.30844 * 5 4 2 17 17 N 1.47024 * 109.88039 * 121.09244 * 2 1 3 18 18 C 1.34769 * 125.65086 * 298.40096 * 17 2 1 19 19 O 1.21578 * 119.99932 * 186.00554 * 18 17 2 20 20 C 1.47683 * 120.00185 * 6.00144 * 18 17 2 21 21 C 1.39693 * 120.07851 * 163.77328 * 20 18 17 22 22 C 1.37741 * 119.92110 * 180.02562 * 21 20 18 23 23 C 1.39030 * 120.07640 * 0.02562 * 22 21 20 24 24 N 1.39933 * 119.92039 * 179.97438 * 23 22 21 25 25 C 1.36313 * 126.86655 * 179.97438 * 24 23 22 26 26 C 1.34971 * 106.77799 * 180.25711 * 25 24 23 27 27 N 1.33377 * 109.01735 * 359.63143 * 26 25 24 28 28 N 1.28773 * 109.92199 * 0.37825 * 27 26 25 29 29 C 1.39023 * 120.16219 * 0.27035 * 23 22 21 30 30 C 1.37748 * 120.07791 * 359.44778 * 29 23 22 31 31 H 1.08991 * 109.47119 * 278.78096 * 1 2 3 32 32 H 1.08997 * 109.46856 * 38.78619 * 1 2 3 33 33 H 1.09004 * 109.46506 * 158.78113 * 1 2 3 34 34 H 1.09002 * 110.84297 * 100.19735 * 4 2 1 35 35 H 1.08990 * 110.66763 * 337.05127 * 4 2 1 36 36 H 0.96995 * 120.00563 * 18.66428 * 7 5 4 37 37 H 0.97001 * 119.99913 * 180.02562 * 11 10 8 38 38 H 1.09005 * 110.36857 * 204.14899 * 16 5 4 39 39 H 1.09001 * 110.46259 * 81.87744 * 16 5 4 40 40 H 1.08001 * 120.04557 * 0.04704 * 21 20 18 41 41 H 1.07997 * 119.96311 * 180.02562 * 22 21 20 42 42 H 1.07992 * 126.61162 * 0.02562 * 25 24 23 43 43 H 1.07999 * 125.49271 * 179.77451 * 26 25 24 44 44 H 1.08004 * 119.96509 * 179.70894 * 29 23 22 45 45 H 1.07995 * 120.04151 * 180.27233 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2427 5 6 3.2864 -1.5183 -0.6914 6 1 3.4809 -2.4155 -1.2791 7 7 4.4705 -0.6568 -0.6462 8 6 5.7191 -1.2130 -0.5634 9 1 5.8310 -2.2867 -0.5310 10 6 6.8411 -0.3967 -0.5211 11 7 8.0412 -0.9313 -0.4410 12 14 6.6476 1.4604 -0.5765 13 1 6.5191 1.9861 0.8064 14 1 7.8391 2.0630 -1.2264 15 1 5.4309 1.8084 -1.3534 16 6 2.8100 -1.8825 0.7368 17 7 2.0300 -0.7140 1.1840 18 6 1.8073 -0.3620 2.4657 19 8 2.3603 -0.9634 3.3661 20 6 0.8916 0.7541 2.7765 21 6 0.3926 0.9104 4.0719 22 6 -0.4617 1.9523 4.3581 23 6 -0.8278 2.8475 3.3594 24 7 -1.6963 3.9045 3.6536 25 6 -2.1454 4.8587 2.7899 26 6 -2.9525 5.6765 3.4980 27 7 -3.0122 5.2436 4.7582 28 7 -2.2785 4.1945 4.8970 29 6 -0.3381 2.6916 2.0677 30 6 0.5212 1.6554 1.7755 31 1 -0.3633 0.1569 1.0155 32 1 -0.3633 0.8010 -0.6437 33 1 -0.3632 -0.9581 -0.3720 34 1 2.3598 -0.0449 -2.0191 35 1 1.3068 -1.4404 -1.6225 36 1 4.3701 0.3075 -0.6751 37 1 8.8252 -0.3608 -0.4111 38 1 3.6656 -2.0412 1.3933 39 1 2.1807 -2.7722 0.7134 40 1 0.6765 0.2153 4.8482 41 1 -0.8475 2.0739 5.3594 42 1 -1.8995 4.9459 1.7419 43 1 -3.4687 6.5407 3.1068 44 1 -0.6283 3.3862 1.2932 45 1 0.9048 1.5374 0.7729 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989668927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:14 Heat of formation + Delta-G solvation = 158.965216 kcal Electronic energy + Delta-G solvation = -29400.422763 eV Core-core repulsion = 25422.696418 eV Total energy + Delta-G solvation = -3977.726344 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.61359 -41.02139 -39.01971 -37.64514 -35.19413 -34.35034 -32.45913 -31.62936 -31.30986 -30.89625 -30.32864 -28.79934 -26.19194 -25.05371 -23.91409 -23.48559 -22.79657 -21.68336 -21.56093 -20.32889 -19.57807 -18.87922 -17.88938 -17.43234 -16.29176 -16.24217 -15.71814 -15.66048 -15.52499 -14.86145 -14.82693 -14.54517 -14.30144 -14.15350 -13.81828 -13.67441 -13.31505 -13.19486 -12.94066 -12.72752 -12.43035 -12.29983 -12.17034 -12.07368 -11.67899 -11.62330 -11.47318 -11.19365 -11.11892 -10.91731 -10.73605 -10.54530 -10.20255 -9.87507 -9.84331 -9.68925 -9.41362 -9.13920 -8.81649 -8.45415 -7.40034 -5.86392 -3.23981 -0.08785 0.86566 1.24749 1.67274 2.11077 2.72943 3.02839 3.26146 3.32138 3.38225 3.51038 3.91998 4.00654 4.29467 4.31750 4.43071 4.49596 4.51346 4.57504 4.72569 4.75051 4.79132 4.93771 5.08771 5.11463 5.12831 5.21606 5.35065 5.42166 5.52096 5.53888 5.60822 5.63874 5.68513 5.84267 5.85893 5.97138 5.97746 6.03787 6.06362 6.12982 6.31211 6.43765 6.52139 6.62897 7.64162 7.68269 7.87067 8.23892 8.31958 9.08219 9.80448 9.97654 11.31406 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015220 B = 0.002832 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.257785 B = 9884.045625 C =10325.324198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.116 3.884 3 H 0.082 0.918 4 C -0.139 4.139 5 C 0.174 3.826 6 H 0.082 0.918 7 N -0.736 5.736 8 C -0.251 4.251 9 H 0.093 0.907 10 C 0.010 3.990 11 N -0.928 5.928 12 Si 0.882 3.118 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.278 1.278 16 C 0.078 3.922 17 N -0.594 5.594 18 C 0.568 3.432 19 O -0.532 6.532 20 C -0.126 4.126 21 C -0.037 4.037 22 C -0.121 4.121 23 C 0.157 3.843 24 N -0.317 5.317 25 C 0.024 3.976 26 C -0.073 4.073 27 N -0.232 5.232 28 N -0.061 5.061 29 C -0.144 4.144 30 C -0.083 4.083 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.361 0.639 37 H 0.261 0.739 38 H 0.090 0.910 39 H 0.060 0.940 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.197 0.803 43 H 0.191 0.809 44 H 0.138 0.862 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.720 8.919 0.031 25.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.013 3.987 3 H 0.100 0.900 4 C -0.177 4.177 5 C 0.062 3.938 6 H 0.100 0.900 7 N -0.377 5.377 8 C -0.380 4.380 9 H 0.111 0.889 10 C -0.186 4.186 11 N -0.575 5.575 12 Si 0.713 3.287 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.204 1.204 16 C -0.047 4.047 17 N -0.327 5.327 18 C 0.357 3.643 19 O -0.409 6.409 20 C -0.130 4.130 21 C -0.057 4.057 22 C -0.141 4.141 23 C 0.064 3.936 24 N -0.098 5.098 25 C -0.126 4.126 26 C -0.228 4.228 27 N -0.102 5.102 28 N -0.039 5.039 29 C -0.165 4.165 30 C -0.101 4.101 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.194 0.806 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.166 0.834 41 H 0.163 0.837 42 H 0.214 0.786 43 H 0.208 0.792 44 H 0.155 0.845 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -23.356 8.068 2.078 24.797 hybrid contribution 0.114 1.810 -1.113 2.128 sum -23.242 9.878 0.965 25.272 Atomic orbital electron populations 1.22873 0.94889 1.03126 1.03140 1.21964 0.93780 0.96394 0.86604 0.90028 1.23124 0.98699 1.00160 0.95767 1.21321 0.85881 0.94499 0.92082 0.90019 1.42652 1.02062 1.03815 1.89204 1.19034 0.81393 0.93953 1.43639 0.88909 1.24669 0.95130 0.97299 1.01549 1.69692 0.97084 1.34193 1.56522 0.86594 0.76900 0.87426 0.77811 1.21053 1.21588 1.20420 1.23330 0.95234 0.86205 0.99904 1.48314 1.51650 1.28726 1.03971 1.17699 0.81554 0.83314 0.81740 1.90808 1.50058 1.55005 1.45056 1.20172 1.00436 0.97676 0.94737 1.21207 0.92738 0.95959 0.95761 1.20865 0.99532 0.94294 0.99427 1.17799 0.92815 0.87909 0.95062 1.48055 1.32478 1.19929 1.09368 1.23617 0.99130 0.90973 0.98914 1.23291 1.05319 1.04412 0.89795 1.74368 1.12848 1.04764 1.18215 1.82159 1.09908 1.12093 0.99772 1.20793 1.00969 1.00603 0.94152 1.22653 0.94223 0.91551 1.01690 0.90760 0.91149 0.91509 0.89579 0.89852 0.80604 0.92905 0.89202 0.92203 0.83381 0.83683 0.78610 0.79192 0.84468 0.80963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.48 7.75 37.16 0.29 -1.19 16 2 C 0.12 1.30 2.73 -66.94 -0.18 1.12 16 3 H 0.08 0.89 6.20 -51.93 -0.32 0.57 16 4 C -0.14 -1.61 6.05 -24.89 -0.15 -1.76 16 5 C 0.17 2.84 3.69 -65.79 -0.24 2.60 16 6 H 0.08 1.33 8.13 -51.93 -0.42 0.90 16 7 N -0.74 -15.79 5.07 -51.35 -0.26 -16.05 16 8 C -0.25 -6.68 10.47 -15.06 -0.16 -6.83 16 9 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 10 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 11 N -0.93 -28.49 13.97 55.49 0.78 -27.72 16 12 Si 0.88 21.39 27.74 -169.99 -4.71 16.68 16 13 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.28 -6.12 6.52 56.52 0.37 -5.75 16 16 C 0.08 1.29 6.63 -2.53 -0.02 1.27 16 17 N -0.59 -8.87 3.06 -164.16 -0.50 -9.37 16 18 C 0.57 9.22 7.59 -12.41 -0.09 9.12 16 19 O -0.53 -10.69 16.69 5.30 0.09 -10.60 16 20 C -0.13 -1.59 5.04 -104.95 -0.53 -2.11 16 21 C -0.04 -0.43 9.58 -39.22 -0.38 -0.81 16 22 C -0.12 -1.27 9.66 -39.47 -0.38 -1.65 16 23 C 0.16 1.54 6.70 -83.57 -0.56 0.98 16 24 N -0.32 -3.15 3.85 -10.50 -0.04 -3.19 16 25 C 0.02 0.16 10.92 -16.72 -0.18 -0.02 16 26 C -0.07 -0.56 11.86 -18.04 -0.21 -0.77 16 27 N -0.23 -2.66 12.33 30.09 0.37 -2.29 16 28 N -0.06 -0.75 13.15 60.35 0.79 0.04 16 29 C -0.14 -1.16 9.46 -39.47 -0.37 -1.54 16 30 C -0.08 -0.81 6.28 -39.22 -0.25 -1.05 16 31 H 0.07 0.66 4.46 -51.93 -0.23 0.43 16 32 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 33 H 0.07 0.53 7.61 -51.93 -0.39 0.13 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 0.76 7.52 -51.93 -0.39 0.37 16 36 H 0.36 7.66 5.68 -40.82 -0.23 7.42 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.09 1.85 7.98 -51.93 -0.41 1.43 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.15 1.69 7.73 -52.49 -0.41 1.29 16 41 H 0.15 1.43 7.72 -52.49 -0.41 1.03 16 42 H 0.20 0.48 7.16 -52.49 -0.38 0.10 16 43 H 0.19 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.14 0.65 6.82 -52.48 -0.36 0.29 16 45 H 0.17 1.50 2.52 -52.49 -0.13 1.37 16 LS Contribution 364.80 15.07 5.50 5.50 Total: -1.00 -35.56 364.80 -6.87 -42.43 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.36 Total: 7.03 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -3.51 Total: -2.45 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 1.14 Total: -58.57 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.71 Total: 16.68 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.56 -6.87 -42.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989668927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.397 kcal (2) G-P(sol) polarization free energy of solvation -35.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds