Wall clock time and date at job start Sat Apr 11 2020 06:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.99394 * 2 1 4 4 C 1.54334 * 109.99170 * 238.96102 * 2 1 3 5 5 C 1.55155 * 103.02023 * 218.66446 * 4 2 1 6 6 H 1.08997 * 111.00406 * 153.38816 * 5 4 2 7 7 N 1.46499 * 111.03758 * 277.22313 * 5 4 2 8 8 C 1.36938 * 119.99980 * 198.66932 * 7 5 4 9 9 H 1.08003 * 120.00072 * 359.97438 * 8 7 5 10 10 C 1.38811 * 120.00182 * 179.97438 * 8 7 5 11 11 N 1.31622 * 120.00078 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99987 * 0.02562 * 10 8 7 13 13 H 1.48503 * 109.46996 * 89.99477 * 12 10 8 14 14 H 1.48500 * 109.46976 * 209.99422 * 12 10 8 15 15 H 1.48500 * 109.47137 * 329.99471 * 12 10 8 16 16 C 1.54905 * 101.58043 * 35.30844 * 5 4 2 17 17 N 1.47024 * 109.88039 * 121.09244 * 2 1 3 18 18 C 1.34769 * 125.65086 * 298.40096 * 17 2 1 19 19 O 1.21578 * 119.99932 * 186.00554 * 18 17 2 20 20 C 1.47683 * 120.00185 * 6.00144 * 18 17 2 21 21 C 1.39693 * 120.07851 * 163.77328 * 20 18 17 22 22 C 1.37741 * 119.92110 * 180.02562 * 21 20 18 23 23 C 1.39030 * 120.07640 * 0.02562 * 22 21 20 24 24 N 1.39933 * 119.92039 * 179.97438 * 23 22 21 25 25 C 1.36313 * 126.86655 * 179.97438 * 24 23 22 26 26 C 1.34971 * 106.77799 * 180.25711 * 25 24 23 27 27 N 1.33377 * 109.01735 * 359.63143 * 26 25 24 28 28 N 1.28773 * 109.92199 * 0.37825 * 27 26 25 29 29 C 1.39023 * 120.16219 * 0.27035 * 23 22 21 30 30 C 1.37748 * 120.07791 * 359.44778 * 29 23 22 31 31 H 1.08991 * 109.47119 * 278.78096 * 1 2 3 32 32 H 1.08997 * 109.46856 * 38.78619 * 1 2 3 33 33 H 1.09004 * 109.46506 * 158.78113 * 1 2 3 34 34 H 1.09002 * 110.84297 * 100.19735 * 4 2 1 35 35 H 1.08990 * 110.66763 * 337.05127 * 4 2 1 36 36 H 0.96995 * 120.00563 * 18.66428 * 7 5 4 37 37 H 0.97001 * 119.99913 * 180.02562 * 11 10 8 38 38 H 1.09005 * 110.36857 * 204.14899 * 16 5 4 39 39 H 1.09001 * 110.46259 * 81.87744 * 16 5 4 40 40 H 1.08001 * 120.04557 * 0.04704 * 21 20 18 41 41 H 1.07997 * 119.96311 * 180.02562 * 22 21 20 42 42 H 1.07992 * 126.61162 * 0.02562 * 25 24 23 43 43 H 1.07999 * 125.49271 * 179.77451 * 26 25 24 44 44 H 1.08004 * 119.96509 * 179.70894 * 29 23 22 45 45 H 1.07995 * 120.04151 * 180.27233 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2427 5 6 3.2864 -1.5183 -0.6914 6 1 3.4809 -2.4155 -1.2791 7 7 4.4705 -0.6568 -0.6462 8 6 5.7191 -1.2130 -0.5634 9 1 5.8310 -2.2867 -0.5310 10 6 6.8411 -0.3967 -0.5211 11 7 8.0412 -0.9313 -0.4410 12 14 6.6476 1.4604 -0.5765 13 1 6.5191 1.9861 0.8064 14 1 7.8391 2.0630 -1.2264 15 1 5.4309 1.8084 -1.3534 16 6 2.8100 -1.8825 0.7368 17 7 2.0300 -0.7140 1.1840 18 6 1.8073 -0.3620 2.4657 19 8 2.3603 -0.9634 3.3661 20 6 0.8916 0.7541 2.7765 21 6 0.3926 0.9104 4.0719 22 6 -0.4617 1.9523 4.3581 23 6 -0.8278 2.8475 3.3594 24 7 -1.6963 3.9045 3.6536 25 6 -2.1454 4.8587 2.7899 26 6 -2.9525 5.6765 3.4980 27 7 -3.0122 5.2436 4.7582 28 7 -2.2785 4.1945 4.8970 29 6 -0.3381 2.6916 2.0677 30 6 0.5212 1.6554 1.7755 31 1 -0.3633 0.1569 1.0155 32 1 -0.3633 0.8010 -0.6437 33 1 -0.3632 -0.9581 -0.3720 34 1 2.3598 -0.0449 -2.0191 35 1 1.3068 -1.4404 -1.6225 36 1 4.3701 0.3075 -0.6751 37 1 8.8252 -0.3608 -0.4111 38 1 3.6656 -2.0412 1.3933 39 1 2.1807 -2.7722 0.7134 40 1 0.6765 0.2153 4.8482 41 1 -0.8475 2.0739 5.3594 42 1 -1.8995 4.9459 1.7419 43 1 -3.4687 6.5407 3.1068 44 1 -0.6283 3.3862 1.2932 45 1 0.9048 1.5374 0.7729 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989668927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:13 Heat of formation + Delta-G solvation = 133.267650 kcal Electronic energy + Delta-G solvation = -29401.537093 eV Core-core repulsion = 25422.696418 eV Total energy + Delta-G solvation = -3978.840674 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.25376 -42.02226 -39.94161 -38.89643 -36.40634 -35.52098 -33.84345 -32.91967 -32.20662 -31.63208 -31.43105 -29.98092 -27.18792 -25.95911 -25.36814 -24.44442 -23.83003 -22.45093 -22.30958 -21.56909 -20.63264 -19.82549 -19.54196 -18.51278 -17.47491 -16.93394 -16.83585 -16.44454 -16.37976 -16.23515 -15.90034 -15.63046 -15.23181 -15.14652 -14.94073 -14.70831 -14.62190 -14.31130 -14.02148 -13.82849 -13.59736 -13.48052 -13.07411 -12.96373 -12.91298 -12.71516 -12.33469 -12.28975 -12.22517 -12.11025 -12.05010 -11.84375 -11.67551 -11.48960 -11.14500 -11.04480 -10.45655 -10.13017 -9.83067 -9.55618 -9.24872 -8.03040 -5.36959 -0.84354 0.12914 0.51598 1.05015 1.32305 1.40434 1.46579 1.53548 1.72777 1.91130 2.47584 2.61064 3.23207 3.25242 3.37857 3.49860 3.53079 3.62504 3.67005 3.80865 3.91894 3.98311 4.09842 4.12051 4.17718 4.28492 4.35445 4.40726 4.51502 4.65104 4.73976 4.77425 4.81610 4.89564 4.98990 5.03390 5.05892 5.09452 5.17982 5.19901 5.25638 5.34763 5.39027 5.45044 5.77648 5.78120 6.20780 6.50193 7.04127 7.04485 7.07591 7.82367 8.00093 9.18418 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015220 B = 0.002832 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.257785 B = 9884.045625 C =10325.324198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.107 3.893 3 H 0.096 0.904 4 C -0.121 4.121 5 C 0.161 3.839 6 H 0.081 0.919 7 N -0.737 5.737 8 C -0.228 4.228 9 H 0.057 0.943 10 C -0.068 4.068 11 N -0.985 5.985 12 Si 0.951 3.049 13 H -0.294 1.294 14 H -0.297 1.297 15 H -0.232 1.232 16 C 0.082 3.918 17 N -0.596 5.596 18 C 0.558 3.442 19 O -0.592 6.592 20 C -0.146 4.146 21 C -0.047 4.047 22 C -0.129 4.129 23 C 0.158 3.842 24 N -0.325 5.325 25 C 0.043 3.957 26 C -0.080 4.080 27 N -0.264 5.264 28 N -0.114 5.114 29 C -0.123 4.123 30 C -0.070 4.070 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.117 0.883 36 H 0.366 0.634 37 H 0.256 0.744 38 H 0.034 0.966 39 H 0.081 0.919 40 H 0.132 0.868 41 H 0.140 0.860 42 H 0.250 0.750 43 H 0.225 0.775 44 H 0.188 0.812 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.603 12.524 -3.557 30.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.005 3.995 3 H 0.113 0.887 4 C -0.159 4.159 5 C 0.051 3.949 6 H 0.099 0.901 7 N -0.380 5.380 8 C -0.359 4.359 9 H 0.075 0.925 10 C -0.259 4.259 11 N -0.636 5.636 12 Si 0.778 3.222 13 H -0.221 1.221 14 H -0.224 1.224 15 H -0.156 1.156 16 C -0.043 4.043 17 N -0.327 5.327 18 C 0.349 3.651 19 O -0.474 6.474 20 C -0.149 4.149 21 C -0.066 4.066 22 C -0.149 4.149 23 C 0.065 3.935 24 N -0.107 5.107 25 C -0.107 4.107 26 C -0.235 4.235 27 N -0.132 5.132 28 N -0.091 5.091 29 C -0.144 4.144 30 C -0.088 4.088 31 H 0.084 0.916 32 H 0.129 0.871 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.135 0.865 36 H 0.200 0.800 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.099 0.901 40 H 0.150 0.850 41 H 0.158 0.842 42 H 0.266 0.734 43 H 0.242 0.758 44 H 0.205 0.795 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -27.347 11.677 -1.535 29.775 hybrid contribution 1.223 0.614 -0.002 1.368 sum -26.125 12.291 -1.537 28.912 Atomic orbital electron populations 1.22833 0.91688 1.05165 1.03632 1.22360 0.96304 0.96375 0.84431 0.88715 1.23116 0.96336 1.00442 0.96035 1.21593 0.86282 0.94889 0.92088 0.90149 1.42600 1.01648 1.04564 1.89157 1.19012 0.83748 0.92542 1.40625 0.92490 1.25542 0.94768 1.02803 1.02774 1.69894 0.98100 1.36002 1.59570 0.85468 0.78339 0.80754 0.77599 1.22101 1.22357 1.15585 1.23089 0.94242 0.88267 0.98737 1.48450 1.50965 1.28340 1.04916 1.18382 0.81469 0.83745 0.81478 1.90766 1.52533 1.57303 1.46833 1.19933 1.01221 0.97842 0.95948 1.21083 0.93569 0.96414 0.95558 1.20811 0.99629 0.94530 0.99966 1.17987 0.92437 0.87486 0.95598 1.48167 1.32492 1.20444 1.09617 1.24555 0.96934 0.88727 1.00456 1.24031 1.05459 1.05445 0.88608 1.74342 1.13289 1.05066 1.20532 1.82173 1.12021 1.13439 1.01436 1.21207 0.98877 1.00130 0.94140 1.22781 0.93871 0.90818 1.01358 0.91562 0.87093 0.90944 0.88015 0.86508 0.80010 0.93523 0.94702 0.90127 0.84981 0.84196 0.73414 0.75821 0.79454 0.79235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 7.75 71.98 0.56 -1.25 16 2 C 0.11 1.92 2.73 45.35 0.12 2.04 16 3 H 0.10 1.50 6.20 -2.39 -0.01 1.49 16 4 C -0.12 -2.23 6.05 31.79 0.19 -2.03 16 5 C 0.16 5.05 3.69 46.38 0.17 5.22 16 6 H 0.08 2.55 8.13 -2.39 -0.02 2.53 16 7 N -0.74 -30.94 5.07 -316.39 -1.61 -32.54 16 8 C -0.23 -12.49 10.47 84.03 0.88 -11.61 16 9 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 10 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 11 N -0.99 -63.19 13.97 21.65 0.30 -62.88 16 12 Si 0.95 44.05 27.74 68.60 1.90 45.96 16 13 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 14 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 15 H -0.23 -8.90 6.52 99.48 0.65 -8.26 16 16 C 0.08 2.75 6.63 86.85 0.58 3.32 16 17 N -0.60 -17.15 3.06 -791.56 -2.43 -19.58 16 18 C 0.56 18.45 7.59 86.74 0.66 19.11 16 19 O -0.59 -25.66 16.69 -3.96 -0.07 -25.73 16 20 C -0.15 -3.51 5.04 -20.08 -0.10 -3.62 16 21 C -0.05 -1.11 9.58 22.50 0.22 -0.90 16 22 C -0.13 -2.66 9.66 22.34 0.22 -2.45 16 23 C 0.16 2.60 6.70 38.23 0.26 2.85 16 24 N -0.33 -5.42 3.85 -187.13 -0.72 -6.14 16 25 C 0.04 0.35 10.92 83.24 0.91 1.26 16 26 C -0.08 -0.91 11.86 83.71 0.99 0.08 16 27 N -0.26 -5.66 12.33 -58.71 -0.72 -6.38 16 28 N -0.11 -2.69 13.15 37.02 0.49 -2.20 16 29 C -0.12 -1.28 9.46 22.34 0.21 -1.07 16 30 C -0.07 -1.06 6.28 22.51 0.14 -0.92 16 31 H 0.07 0.86 4.46 -2.39 -0.01 0.85 16 32 H 0.11 0.33 8.08 -2.39 -0.02 0.31 16 33 H 0.07 0.72 7.61 -2.39 -0.02 0.70 16 34 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.12 1.45 7.52 -2.39 -0.02 1.43 16 36 H 0.37 14.49 5.68 -92.71 -0.53 13.96 16 37 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 38 H 0.03 1.54 7.98 -2.38 -0.02 1.52 16 39 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.13 3.43 7.73 -2.91 -0.02 3.40 16 41 H 0.14 2.94 7.72 -2.91 -0.02 2.91 16 42 H 0.25 -0.91 7.16 -2.91 -0.02 -0.93 16 43 H 0.23 0.67 8.06 -2.91 -0.02 0.64 16 44 H 0.19 0.07 6.82 -2.91 -0.02 0.05 16 45 H 0.19 2.15 2.52 -2.91 -0.01 2.14 16 Total: -1.00 -88.48 364.80 4.08 -84.39 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.47 Total: 18.50 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 6.47 Total: 6.60 kcal Atomic # 7 Polarization: -125.04 SS G_CDS: -4.69 Total: -129.73 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.07 Total: -25.73 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.90 Total: 45.96 kcal Total: -88.48 4.08 -84.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989668927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.661 kcal (2) G-P(sol) polarization free energy of solvation -88.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds