Wall clock time and date at job start Sat Apr 11 2020 06:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 110.00059 * 2 1 4 4 C 1.54320 * 109.88275 * 238.90054 * 2 1 3 5 5 C 1.55158 * 102.94309 * 262.77569 * 4 2 1 6 6 H 1.08997 * 111.00620 * 82.61248 * 5 4 2 7 7 N 1.46505 * 111.00470 * 206.42540 * 5 4 2 8 8 C 1.36934 * 119.99969 * 204.99993 * 7 5 4 9 9 H 1.08006 * 120.00061 * 359.97438 * 8 7 5 10 10 C 1.38807 * 120.00117 * 180.02562 * 8 7 5 11 11 N 1.31622 * 119.99906 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 120.00175 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.47062 * 89.99984 * 12 10 8 14 14 H 1.48489 * 109.47411 * 210.00377 * 12 10 8 15 15 H 1.48506 * 109.47037 * 330.00905 * 12 10 8 16 16 C 1.55134 * 101.48775 * 324.33365 * 5 4 2 17 17 N 1.47028 * 109.88174 * 121.09347 * 2 1 3 18 18 C 1.34772 * 125.64414 * 300.43876 * 17 2 1 19 19 O 1.21543 * 120.00529 * 0.02562 * 18 17 2 20 20 C 1.47983 * 119.99806 * 179.97438 * 18 17 2 21 21 C 1.39441 * 119.65006 * 180.02562 * 20 18 17 22 22 C 1.38350 * 119.13627 * 180.02562 * 21 20 18 23 23 C 1.39289 * 118.43508 * 359.97438 * 22 21 20 24 24 N 1.39880 * 120.38815 * 179.97438 * 23 22 21 25 25 C 1.37153 * 126.48157 * 179.97438 * 24 23 22 26 26 C 1.34629 * 106.82771 * 180.02562 * 25 24 23 27 27 N 1.34152 * 108.21447 * 359.74355 * 26 25 24 28 28 C 1.30488 * 109.36645 * 0.43187 * 27 26 25 29 29 C 1.39271 * 119.22041 * 0.25530 * 23 22 21 30 30 N 1.31383 * 120.79770 * 359.44524 * 29 23 22 31 31 H 1.08997 * 109.47687 * 300.36226 * 1 2 3 32 32 H 1.09008 * 109.47480 * 60.36191 * 1 2 3 33 33 H 1.08998 * 109.47548 * 180.35838 * 1 2 3 34 34 H 1.08998 * 110.72465 * 21.14128 * 4 2 1 35 35 H 1.09001 * 110.72183 * 144.41605 * 4 2 1 36 36 H 0.96992 * 119.99960 * 25.00338 * 7 5 4 37 37 H 0.97006 * 119.99383 * 179.97438 * 11 10 8 38 38 H 1.09001 * 110.49506 * 278.45328 * 16 5 4 39 39 H 1.08992 * 110.34551 * 156.05833 * 16 5 4 40 40 H 1.08002 * 120.43758 * 359.97438 * 21 20 18 41 41 H 1.08002 * 120.77882 * 180.02562 * 22 21 20 42 42 H 1.07998 * 126.58629 * 0.03706 * 25 24 23 43 43 H 1.08004 * 125.88936 * 180.02562 * 26 25 24 44 44 H 1.08002 * 125.72546 * 179.83833 * 28 27 26 45 45 H 1.07998 * 119.59591 * 179.74722 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2426 5 6 2.3518 -2.1695 -0.6922 6 1 1.4453 -2.7739 -0.6608 7 7 3.3937 -2.8313 -1.4814 8 6 3.4568 -4.1986 -1.5225 9 1 2.7388 -4.7891 -0.9728 10 6 4.4443 -4.8257 -2.2698 11 7 4.5046 -6.1399 -2.3097 12 14 5.6866 -3.8044 -3.2201 13 1 6.8632 -3.5276 -2.3573 14 1 6.1225 -4.5520 -4.4267 15 1 5.0618 -2.5215 -3.6313 16 6 2.8612 -1.8466 0.7370 17 7 2.0300 -0.7140 1.1840 18 6 1.7753 -0.3843 2.4657 19 8 1.0769 0.5778 2.7185 20 6 2.3450 -1.1944 3.5653 21 6 2.0763 -0.8470 4.8888 22 6 2.6148 -1.6114 5.9084 23 6 3.4085 -2.7048 5.5695 24 7 3.9739 -3.5052 6.5677 25 6 4.7701 -4.6055 6.3771 26 6 5.0906 -5.0711 7.5990 27 7 4.5139 -4.2780 8.5144 28 6 3.8377 -3.3399 7.9098 29 6 3.6372 -2.9882 4.2253 30 7 3.1058 -2.2450 3.2812 31 1 -0.3634 0.5194 0.8867 32 1 -0.3634 0.5082 -0.8933 33 1 -0.3634 -1.0276 0.0064 34 1 1.2918 -0.7891 -2.0200 35 1 2.9656 -0.2833 -1.6182 36 1 4.0388 -2.3010 -1.9748 37 1 5.1945 -6.5780 -2.8323 38 1 3.9123 -1.5589 0.7116 39 1 2.7177 -2.7047 1.3934 40 1 1.4566 0.0081 5.1150 41 1 2.4236 -1.3666 6.9428 42 1 5.0806 -5.0190 5.4289 43 1 5.7093 -5.9317 7.8064 44 1 3.2691 -2.5601 8.3946 45 1 4.2550 -3.8320 3.9557 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989672402.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:17 Heat of formation + Delta-G solvation = 87.000372 kcal Electronic energy + Delta-G solvation = -29090.154630 eV Core-core repulsion = 25109.307655 eV Total energy + Delta-G solvation = -3980.846974 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.45111 -41.86733 -40.55775 -38.80340 -36.10837 -35.84967 -33.67694 -33.44027 -32.90786 -30.98649 -30.49565 -30.36200 -26.82350 -26.28604 -25.35872 -25.14921 -23.49405 -22.22792 -21.99708 -21.78952 -20.59020 -19.71246 -19.67143 -18.54356 -17.79504 -17.18473 -16.80374 -16.74022 -16.33691 -16.08697 -15.75036 -15.65645 -15.29143 -15.01788 -14.84086 -14.79803 -14.61727 -14.50356 -14.48214 -14.09326 -13.95005 -13.62527 -13.39028 -13.18713 -13.08782 -12.82292 -12.31953 -12.20199 -12.16292 -11.95626 -11.80933 -11.45966 -11.32704 -11.28157 -11.05886 -11.02679 -10.51787 -9.96451 -9.70454 -9.50876 -9.29695 -7.99396 -5.34338 -0.86062 -0.04462 0.94793 1.41855 1.43820 1.44439 1.51515 1.67116 1.83975 2.05298 2.51170 2.64303 2.89318 3.29050 3.30505 3.32200 3.41704 3.62515 3.70794 3.79307 3.81217 3.89909 3.97433 4.06581 4.37142 4.38467 4.41955 4.45404 4.45972 4.55162 4.66170 4.69141 4.72318 4.91682 4.99332 5.01546 5.08635 5.16735 5.20469 5.24903 5.39665 5.47096 5.62169 5.79610 6.06273 6.23611 6.38877 6.48378 6.88582 6.99399 7.09331 7.82795 8.02742 9.21559 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008928 B = 0.003512 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3135.359018 B = 7970.965846 C =10733.686761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.135 3.865 3 H 0.083 0.917 4 C -0.130 4.130 5 C 0.166 3.834 6 H 0.061 0.939 7 N -0.736 5.736 8 C -0.229 4.229 9 H 0.059 0.941 10 C -0.057 4.057 11 N -0.982 5.982 12 Si 0.950 3.050 13 H -0.280 1.280 14 H -0.300 1.300 15 H -0.248 1.248 16 C 0.094 3.906 17 N -0.591 5.591 18 C 0.578 3.422 19 O -0.560 6.560 20 C 0.049 3.951 21 C -0.076 4.076 22 C -0.083 4.083 23 C 0.110 3.890 24 N -0.415 5.415 25 C -0.058 4.058 26 C -0.034 4.034 27 N -0.517 5.517 28 C 0.193 3.807 29 C 0.084 3.916 30 N -0.441 5.441 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.369 0.631 37 H 0.257 0.743 38 H 0.058 0.942 39 H 0.091 0.909 40 H 0.173 0.827 41 H 0.193 0.807 42 H 0.199 0.801 43 H 0.192 0.808 44 H 0.246 0.754 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.793 12.714 16.854 21.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.032 3.968 3 H 0.101 0.899 4 C -0.168 4.168 5 C 0.056 3.944 6 H 0.079 0.921 7 N -0.379 5.379 8 C -0.360 4.360 9 H 0.077 0.923 10 C -0.249 4.249 11 N -0.632 5.632 12 Si 0.777 3.223 13 H -0.207 1.207 14 H -0.227 1.227 15 H -0.172 1.172 16 C -0.031 4.031 17 N -0.322 5.322 18 C 0.366 3.634 19 O -0.440 6.440 20 C -0.088 4.088 21 C -0.097 4.097 22 C -0.110 4.110 23 C 0.013 3.987 24 N -0.095 5.095 25 C -0.186 4.186 26 C -0.178 4.178 27 N -0.234 5.234 28 C -0.088 4.088 29 C -0.079 4.079 30 N -0.152 5.152 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.203 0.797 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.191 0.809 41 H 0.210 0.790 42 H 0.216 0.784 43 H 0.209 0.791 44 H 0.262 0.738 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -4.034 12.744 16.970 21.602 hybrid contribution 0.915 -0.049 -0.815 1.226 sum -3.119 12.695 16.155 20.782 Atomic orbital electron populations 1.22082 0.93751 1.02136 1.03275 1.21694 0.95410 0.96130 0.83543 0.89897 1.23016 1.02686 0.94549 0.96591 1.21514 0.91003 0.92486 0.89407 0.92063 1.42553 1.35265 1.02740 1.57297 1.18988 1.10853 0.82441 1.23731 0.92342 1.25424 1.01341 0.96302 1.01848 1.69881 1.37390 1.09048 1.46846 0.85493 0.79597 0.79080 0.78107 1.20661 1.22666 1.17211 1.23358 0.93637 0.88563 0.97543 1.48485 1.48678 1.30302 1.04716 1.17685 0.80424 0.83678 0.81591 1.90734 1.40302 1.29339 1.83615 1.21217 0.98889 0.94757 0.93986 1.22150 0.97372 1.00050 0.90110 1.21665 0.94794 0.91770 1.02725 1.19156 0.97136 0.93420 0.88938 1.43214 1.37312 1.22189 1.06784 1.23304 1.00875 0.91694 1.02753 1.22784 1.04470 1.02380 0.88193 1.70346 1.12730 1.06278 1.34056 1.26112 1.02472 1.01725 0.78471 1.22948 0.98751 0.99729 0.86457 1.67965 1.06894 1.03992 1.36346 0.92442 0.89323 0.93124 0.88295 0.89898 0.79725 0.93400 0.92372 0.89090 0.80926 0.79021 0.78444 0.79120 0.73765 0.80705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.06 71.98 0.65 -3.00 16 2 C 0.13 3.49 3.49 45.34 0.16 3.64 16 3 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 4 C -0.13 -3.46 6.14 31.78 0.20 -3.27 16 5 C 0.17 5.83 3.73 46.46 0.17 6.00 16 6 H 0.06 2.32 8.09 -2.39 -0.02 2.30 16 7 N -0.74 -31.73 5.04 -316.00 -1.59 -33.32 16 8 C -0.23 -12.31 10.44 84.03 0.88 -11.43 16 9 H 0.06 3.47 8.06 -2.91 -0.02 3.45 16 10 C -0.06 -3.23 5.50 84.86 0.47 -2.76 16 11 N -0.98 -60.75 13.97 21.65 0.30 -60.44 16 12 Si 0.95 43.29 27.74 68.60 1.90 45.19 16 13 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 14 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 15 H -0.25 -10.00 6.52 99.48 0.65 -9.35 16 16 C 0.09 3.13 5.65 86.93 0.49 3.62 16 17 N -0.59 -17.52 3.08 -790.85 -2.43 -19.96 16 18 C 0.58 17.09 7.62 86.83 0.66 17.75 16 19 O -0.56 -17.79 15.21 -3.85 -0.06 -17.85 16 20 C 0.05 1.25 6.72 41.87 0.28 1.53 16 21 C -0.08 -1.34 9.62 22.59 0.22 -1.13 16 22 C -0.08 -1.07 9.57 22.55 0.22 -0.85 16 23 C 0.11 1.88 6.66 38.36 0.26 2.14 16 24 N -0.41 -6.94 2.98 -349.84 -1.04 -7.98 16 25 C -0.06 -1.00 10.86 83.03 0.90 -0.09 16 26 C -0.03 -0.64 11.85 83.51 0.99 0.35 16 27 N -0.52 -10.75 11.24 -199.67 -2.24 -13.00 16 28 C 0.19 2.96 11.93 179.99 2.15 5.11 16 29 C 0.08 1.82 10.64 85.01 0.90 2.72 16 30 N -0.44 -11.80 6.57 -184.47 -1.21 -13.01 16 31 H 0.06 1.50 6.74 -2.39 -0.02 1.48 16 32 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.10 2.35 7.83 -2.39 -0.02 2.34 16 35 H 0.08 2.10 8.00 -2.39 -0.02 2.08 16 36 H 0.37 15.16 5.62 -92.71 -0.52 14.64 16 37 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 38 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.09 3.26 5.86 -2.39 -0.01 3.25 16 40 H 0.17 2.55 7.63 -2.91 -0.02 2.53 16 41 H 0.19 0.79 6.88 -2.91 -0.02 0.77 16 42 H 0.20 2.64 7.16 -2.91 -0.02 2.62 16 43 H 0.19 2.70 8.06 -2.91 -0.02 2.68 16 44 H 0.25 1.47 7.12 -2.91 -0.02 1.45 16 45 H 0.18 3.42 6.82 -2.91 -0.02 3.40 16 Total: -1.00 -73.93 370.79 3.66 -70.27 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: 0.45 Total: 29.77 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: 9.59 Total: 20.33 kcal Atomic # 7 Polarization: -139.48 SS G_CDS: -8.23 Total: -147.71 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.06 Total: -17.85 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.90 Total: 45.19 kcal Total: -73.93 3.66 -70.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989672402.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.273 kcal (2) G-P(sol) polarization free energy of solvation -73.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds