Wall clock time and date at job start Sat Apr 11 2020 06:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.41403 * 2 1 4 4 C 1.54909 * 110.36456 * 122.29104 * 2 1 3 5 5 C 1.55157 * 101.58301 * 155.84919 * 4 2 1 6 6 H 1.08996 * 110.72048 * 83.03538 * 5 4 2 7 7 N 1.46498 * 110.72134 * 206.13780 * 5 4 2 8 8 C 1.36943 * 119.99727 * 204.99905 * 7 5 4 9 9 H 1.07998 * 120.00392 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99586 * 179.97438 * 8 7 5 11 11 N 1.31618 * 120.00460 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99694 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47297 * 179.97438 * 12 10 8 14 14 H 1.48503 * 109.47261 * 60.00129 * 12 10 8 15 15 H 1.48500 * 109.47454 * 300.00122 * 12 10 8 16 16 C 1.54330 * 102.94147 * 324.50009 * 5 4 2 17 17 N 1.47021 * 107.26851 * 22.18927 * 16 5 4 18 18 C 1.34780 * 125.64835 * 181.09452 * 17 16 5 19 19 O 1.21537 * 120.00451 * 179.97438 * 18 17 16 20 20 C 1.47980 * 119.99654 * 359.96379 * 18 17 16 21 21 C 1.39446 * 119.64592 * 179.72875 * 20 18 17 22 22 C 1.38349 * 119.12996 * 179.70855 * 21 20 18 23 23 C 1.39277 * 118.44121 * 0.55004 * 22 21 20 24 24 N 1.39875 * 120.39558 * 179.70976 * 23 22 21 25 25 C 1.37158 * 126.48918 * 179.73869 * 24 23 22 26 26 C 1.34626 * 106.83365 * 179.84143 * 25 24 23 27 27 N 1.34158 * 108.20841 * 0.41959 * 26 25 24 28 28 C 1.30479 * 109.37008 * 359.73316 * 27 26 25 29 29 C 1.39275 * 119.22013 * 359.72987 * 23 22 21 30 30 N 1.31379 * 120.80152 * 359.97438 * 29 23 22 31 31 H 1.09000 * 109.47091 * 297.70795 * 1 2 3 32 32 H 1.09005 * 109.46895 * 57.70592 * 1 2 3 33 33 H 1.08998 * 109.47255 * 177.70546 * 1 2 3 34 34 H 1.09003 * 111.00445 * 37.77391 * 4 2 1 35 35 H 1.09001 * 111.04226 * 273.93495 * 4 2 1 36 36 H 0.96998 * 120.00095 * 24.99365 * 7 5 4 37 37 H 0.97001 * 119.99952 * 359.97438 * 11 10 8 38 38 H 1.09001 * 109.88413 * 141.60900 * 16 5 4 39 39 H 1.09002 * 109.88144 * 262.77609 * 16 5 4 40 40 H 1.07994 * 120.43603 * 359.97374 * 21 20 18 41 41 H 1.08007 * 120.77788 * 180.25488 * 22 21 20 42 42 H 1.07995 * 126.58300 * 359.95548 * 25 24 23 43 43 H 1.07994 * 125.89577 * 180.12808 * 26 25 24 44 44 H 1.08003 * 125.72453 * 179.97438 * 28 27 26 45 45 H 1.08005 * 119.60207 * 180.02562 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0691 -0.7758 1.2277 5 6 3.4777 -1.1997 0.7343 6 1 4.1951 -0.3913 0.8751 7 7 3.9249 -2.4128 1.4232 8 6 5.2630 -2.6763 1.5468 9 1 5.9887 -1.9900 1.1360 10 6 5.6867 -3.8255 2.2000 11 7 4.8023 -4.6622 2.7002 12 14 7.5120 -4.1852 2.3679 13 1 7.6994 -5.4630 3.1010 14 1 8.1666 -3.0838 3.1187 15 1 8.1213 -4.2945 1.0180 16 6 3.2494 -1.4769 -0.7666 17 7 2.0431 -0.7385 -1.1682 18 6 1.4965 -0.7375 -2.4001 19 8 0.4932 -0.0875 -2.6193 20 6 2.1181 -1.5276 -3.4860 21 6 1.5432 -1.5258 -4.7564 22 6 2.1366 -2.2635 -5.7652 23 6 3.2853 -2.9921 -5.4664 24 7 3.9152 -3.7569 -6.4537 25 6 5.0484 -4.5141 -6.2998 26 6 5.3028 -5.0823 -7.4935 27 7 4.3600 -4.6796 -8.3589 28 6 3.5233 -3.8858 -7.7488 29 6 3.7994 -2.9507 -4.1726 30 7 3.2144 -2.2351 -3.2389 31 1 -0.3633 0.4778 0.9098 32 1 -0.3633 0.5491 -0.8688 33 1 -0.3634 -1.0268 -0.0411 34 1 1.4510 -1.6480 1.4409 35 1 2.1398 -0.1269 2.1006 36 1 3.2731 -3.0294 1.7919 37 1 3.8545 -4.4756 2.6127 38 1 4.1065 -1.1280 -1.3426 39 1 3.1013 -2.5446 -0.9281 40 1 0.6489 -0.9527 -4.9514 41 1 1.7162 -2.2778 -6.7600 42 1 5.6249 -4.6332 -5.3944 43 1 6.1265 -5.7439 -7.7172 44 1 2.6636 -3.4104 -8.1977 45 1 4.6901 -3.5131 -3.9342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989672404.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:24 Heat of formation + Delta-G solvation = 103.017497 kcal Electronic energy + Delta-G solvation = -29117.886096 eV Core-core repulsion = 25137.733676 eV Total energy + Delta-G solvation = -3980.152419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.74300 -40.87576 -39.50344 -37.46579 -35.05042 -34.51731 -32.80844 -31.90532 -31.43457 -30.15504 -29.71131 -28.21263 -25.66939 -25.04235 -24.37455 -23.67624 -22.42382 -21.33964 -21.26304 -20.45946 -19.58077 -18.98617 -17.53498 -17.12676 -16.92059 -16.25722 -15.98377 -15.48898 -15.28792 -14.96246 -14.76289 -14.47849 -14.19089 -14.15516 -13.84326 -13.62318 -13.51699 -13.44684 -13.41630 -12.83774 -12.77098 -12.21054 -12.00191 -11.87423 -11.42106 -11.17640 -11.05315 -10.76503 -10.65052 -10.55744 -10.35381 -10.23777 -10.06165 -10.01532 -9.65519 -9.25435 -9.17941 -8.98670 -8.82104 -8.39513 -7.16863 -6.18580 -3.20509 -0.02741 0.71681 1.72516 2.15430 2.64245 2.76824 2.94970 3.46704 3.49495 3.56703 3.67395 3.85464 4.03336 4.08131 4.22553 4.39641 4.42167 4.60086 4.73030 4.95217 5.02571 5.06610 5.11700 5.13729 5.26987 5.35555 5.38535 5.45437 5.57617 5.64124 5.72994 5.77390 5.82846 5.94156 5.98831 6.05426 6.24147 6.29604 6.30252 6.38987 6.55766 6.59634 6.73800 6.84155 7.34673 7.57430 7.63542 7.73460 8.15475 8.66547 9.10859 9.97522 10.11241 11.29155 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007893 B = 0.003726 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3546.783247 B = 7511.989994 C =10778.824261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.135 3.865 3 H 0.077 0.923 4 C -0.140 4.140 5 C 0.172 3.828 6 H 0.068 0.932 7 N -0.723 5.723 8 C -0.337 4.337 9 H 0.066 0.934 10 C -0.040 4.040 11 N -0.941 5.941 12 Si 1.079 2.921 13 H -0.285 1.285 14 H -0.295 1.295 15 H -0.295 1.295 16 C 0.091 3.909 17 N -0.586 5.586 18 C 0.580 3.420 19 O -0.544 6.544 20 C 0.077 3.923 21 C -0.085 4.085 22 C -0.100 4.100 23 C 0.101 3.899 24 N -0.410 5.410 25 C -0.048 4.048 26 C -0.020 4.020 27 N -0.483 5.483 28 C 0.188 3.812 29 C 0.097 3.903 30 N -0.413 5.413 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.369 0.631 37 H 0.255 0.745 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.159 0.841 41 H 0.150 0.850 42 H 0.184 0.816 43 H 0.178 0.822 44 H 0.210 0.790 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.383 6.091 -16.667 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.032 3.968 3 H 0.095 0.905 4 C -0.179 4.179 5 C 0.060 3.940 6 H 0.086 0.914 7 N -0.364 5.364 8 C -0.467 4.467 9 H 0.084 0.916 10 C -0.238 4.238 11 N -0.585 5.585 12 Si 0.909 3.091 13 H -0.210 1.210 14 H -0.222 1.222 15 H -0.222 1.222 16 C -0.034 4.034 17 N -0.318 5.318 18 C 0.367 3.633 19 O -0.422 6.422 20 C -0.061 4.061 21 C -0.106 4.106 22 C -0.127 4.127 23 C 0.004 3.996 24 N -0.090 5.090 25 C -0.177 4.177 26 C -0.165 4.165 27 N -0.199 5.199 28 C -0.093 4.093 29 C -0.066 4.066 30 N -0.123 5.123 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.203 0.797 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.177 0.823 41 H 0.168 0.832 42 H 0.201 0.799 43 H 0.195 0.805 44 H 0.226 0.774 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.332 5.286 -16.192 17.575 hybrid contribution -1.422 0.970 -0.618 1.829 sum -5.754 6.255 -16.810 18.836 Atomic orbital electron populations 1.22135 0.94088 1.02691 1.02908 1.21948 0.94918 0.95454 0.84463 0.90543 1.23207 0.98123 1.00286 0.96254 1.21228 0.92899 0.90748 0.89164 0.91430 1.42358 1.05111 1.22673 1.66253 1.20049 0.83199 1.08031 1.35452 0.91551 1.25769 1.06811 0.93427 0.97825 1.70892 1.01757 1.38118 1.47768 0.83262 0.73799 0.76071 0.75936 1.21025 1.22188 1.22204 1.23362 0.84759 0.96990 0.98289 1.48516 1.28448 1.46659 1.08140 1.17356 0.83436 0.81311 0.81208 1.90720 1.25117 1.44437 1.81953 1.21356 0.93298 0.97517 0.93973 1.21992 1.00310 0.97005 0.91283 1.21255 0.93928 0.96487 1.01041 1.19142 0.95079 0.95354 0.90003 1.43134 1.21435 1.34985 1.09442 1.22972 0.91760 1.00322 1.02679 1.22427 1.00707 1.04033 0.89373 1.70342 1.04726 1.12573 1.32286 1.25342 1.02124 1.01564 0.80225 1.22799 1.00041 0.97454 0.86292 1.68107 1.07314 1.03885 1.32958 0.92101 0.90022 0.92758 0.90718 0.90060 0.79688 0.93333 0.91532 0.90182 0.82332 0.83237 0.79852 0.80499 0.77381 0.81265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 8.59 37.16 0.32 -1.83 16 2 C 0.13 1.95 3.77 -66.42 -0.25 1.70 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.14 -2.17 6.13 -24.58 -0.15 -2.32 16 5 C 0.17 3.21 3.61 -66.09 -0.24 2.97 16 6 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 7 N -0.72 -16.95 5.15 -51.65 -0.27 -17.22 16 8 C -0.34 -8.91 9.96 -15.06 -0.15 -9.06 16 9 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 10 C -0.04 -1.12 5.50 -17.43 -0.10 -1.21 16 11 N -0.94 -28.01 13.70 55.49 0.76 -27.25 16 12 Si 1.08 24.82 29.92 -169.99 -5.09 19.73 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 16 C 0.09 1.60 5.15 -3.06 -0.02 1.58 16 17 N -0.59 -9.29 3.24 -164.10 -0.53 -9.83 16 18 C 0.58 9.06 7.61 -12.27 -0.09 8.96 16 19 O -0.54 -9.00 14.03 5.33 0.07 -8.92 16 20 C 0.08 1.05 6.72 -83.01 -0.56 0.50 16 21 C -0.08 -0.88 9.62 -39.09 -0.38 -1.26 16 22 C -0.10 -0.84 9.57 -39.15 -0.37 -1.22 16 23 C 0.10 0.99 6.66 -83.42 -0.56 0.44 16 24 N -0.41 -3.93 2.98 -61.93 -0.18 -4.11 16 25 C -0.05 -0.44 10.86 -16.45 -0.18 -0.62 16 26 C -0.02 -0.20 11.85 -17.81 -0.21 -0.41 16 27 N -0.48 -5.43 11.24 -14.46 -0.16 -5.59 16 28 C 0.19 1.73 11.93 -89.59 -1.07 0.66 16 29 C 0.10 1.11 10.64 -17.36 -0.18 0.93 16 30 N -0.41 -5.77 6.83 -9.65 -0.07 -5.84 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.18 6.09 -51.93 -0.32 0.86 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.21 7.92 -51.93 -0.41 0.80 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.37 9.03 6.59 -40.82 -0.27 8.76 16 37 H 0.26 7.49 6.77 -40.82 -0.28 7.21 16 38 H 0.07 1.18 7.53 -51.93 -0.39 0.79 16 39 H 0.08 1.57 7.29 -51.93 -0.38 1.19 16 40 H 0.16 1.44 7.63 -52.49 -0.40 1.04 16 41 H 0.15 0.74 6.88 -52.48 -0.36 0.38 16 42 H 0.18 1.28 7.16 -52.49 -0.38 0.90 16 43 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 44 H 0.21 1.11 7.12 -52.48 -0.37 0.74 16 45 H 0.17 1.69 6.82 -52.48 -0.36 1.33 16 LS Contribution 370.94 15.07 5.59 5.59 Total: -1.00 -33.35 370.94 -9.71 -43.06 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -5.65 Total: 10.58 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -4.18 Total: -0.20 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -0.45 Total: -69.83 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.07 Total: -8.92 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.09 Total: 19.73 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.35 -9.71 -43.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989672404.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.073 kcal (2) G-P(sol) polarization free energy of solvation -33.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds