Wall clock time and date at job start Sat Apr 11 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.99578 * 2 1 4 4 C 1.54326 * 109.88463 * 238.89860 * 2 1 3 5 5 C 1.55153 * 102.94211 * 218.39299 * 4 2 1 6 6 H 1.09000 * 111.00471 * 153.61792 * 5 4 2 7 7 N 1.46504 * 111.00129 * 277.42718 * 5 4 2 8 8 C 1.36943 * 119.99781 * 205.00317 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7 12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7 13 13 H 1.48496 * 109.47031 * 59.99836 * 12 10 8 14 14 H 1.48497 * 109.47267 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47169 * 300.00118 * 12 10 8 16 16 C 1.54906 * 101.58297 * 35.50209 * 5 4 2 17 17 N 1.47023 * 109.87964 * 121.09270 * 2 1 3 18 18 C 1.34777 * 125.65309 * 298.31322 * 17 2 1 19 19 O 1.21571 * 119.99611 * 0.02562 * 18 17 2 20 20 C 1.47751 * 120.00612 * 179.97438 * 18 17 2 21 21 C 1.40600 * 126.04890 * 179.97438 * 20 18 17 22 22 N 1.31242 * 106.62741 * 179.97438 * 21 20 18 23 23 N 1.40108 * 107.18044 * 359.97438 * 22 21 20 24 24 C 1.40143 * 125.57207 * 179.97438 * 23 22 21 25 25 C 1.38857 * 120.07031 * 179.70160 * 24 23 22 26 26 C 1.38107 * 119.92984 * 179.75028 * 25 24 23 27 27 C 1.38288 * 120.06959 * 0.55337 * 26 25 24 28 28 C 1.38284 * 120.13462 * 359.70118 * 27 26 25 29 29 C 1.38113 * 120.06916 * 0.02562 * 28 27 26 30 30 N 1.28709 * 108.85841 * 359.76954 * 23 22 21 31 31 H 1.09002 * 109.46729 * 181.09823 * 1 2 3 32 32 H 1.08997 * 109.47153 * 301.10044 * 1 2 3 33 33 H 1.08998 * 109.46547 * 61.10059 * 1 2 3 34 34 H 1.09003 * 110.71326 * 100.02479 * 4 2 1 35 35 H 1.09000 * 110.71754 * 336.76123 * 4 2 1 36 36 H 0.97000 * 120.00410 * 25.00642 * 7 5 4 37 37 H 0.96995 * 120.00147 * 180.02562 * 11 10 8 38 38 H 1.09006 * 110.36600 * 81.83239 * 16 5 4 39 39 H 1.09005 * 110.36448 * 204.14668 * 16 5 4 40 40 H 1.07996 * 126.68251 * 359.97438 * 21 20 18 41 41 H 1.08003 * 120.03257 * 0.02562 * 25 24 23 42 42 H 1.08002 * 119.97208 * 180.29626 * 26 25 24 43 43 H 1.07998 * 119.93352 * 179.72631 * 27 26 25 44 44 H 1.08002 * 119.96125 * 180.02562 * 28 27 26 45 45 H 1.07997 * 120.03153 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2426 5 6 3.2876 -1.5143 -0.6922 6 1 3.4857 -2.4108 -1.2798 7 7 4.4674 -0.6468 -0.6492 8 6 5.7218 -1.1941 -0.6985 9 1 5.8413 -2.2652 -0.7686 10 6 6.8397 -0.3725 -0.6519 11 7 6.6941 0.9327 -0.5659 12 14 8.5508 -1.1195 -0.7113 13 1 8.7159 -1.8786 -1.9769 14 1 9.5658 -0.0374 -0.6477 15 1 8.7310 -2.0364 0.4429 16 6 2.8145 -1.8794 0.7370 17 7 2.0300 -0.7140 1.1840 18 6 1.8086 -0.3611 2.4658 19 8 1.1438 0.6248 2.7186 20 6 2.3730 -1.1730 3.5637 21 6 2.2231 -0.9229 4.9391 22 7 2.8743 -1.8739 5.5669 23 7 3.4264 -2.7123 4.5894 24 6 4.2011 -3.8535 4.8372 25 6 4.6876 -4.6077 3.7777 26 6 5.4552 -5.7288 4.0251 27 6 5.7298 -6.1071 5.3266 28 6 5.2424 -5.3610 6.3839 29 6 4.4789 -4.2356 6.1429 30 7 3.1021 -2.2655 3.4267 31 1 -0.3633 -1.0275 0.0197 32 1 -0.3633 0.5308 0.8799 33 1 -0.3632 0.4966 -0.8997 34 1 2.3530 -0.0461 -2.0200 35 1 1.3051 -1.4460 -1.6182 36 1 4.3601 0.3151 -0.5858 37 1 7.4753 1.5068 -0.5337 38 1 2.1886 -2.7715 0.7130 39 1 3.6716 -2.0338 1.3924 40 1 1.6783 -0.1072 5.3909 41 1 4.4697 -4.3153 2.7611 42 1 5.8379 -6.3132 3.2014 43 1 6.3266 -6.9867 5.5176 44 1 5.4589 -5.6588 7.3992 45 1 4.0989 -3.6532 6.9691 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989776656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:31 Heat of formation + Delta-G solvation = 130.360030 kcal Electronic energy + Delta-G solvation = -29787.320845 eV Core-core repulsion = 25808.354087 eV Total energy + Delta-G solvation = -3978.966758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.67009 -39.76601 -39.23990 -37.30155 -34.01599 -33.90937 -32.76391 -31.44961 -31.29361 -31.02183 -29.43834 -28.43128 -25.55210 -24.98632 -23.83974 -23.65352 -22.62834 -21.47097 -21.22334 -20.02898 -18.99735 -18.24411 -17.31982 -16.72790 -16.48779 -16.39751 -15.92583 -15.39402 -14.97121 -14.65970 -14.54509 -14.20334 -13.92208 -13.70733 -13.67148 -13.36785 -13.10422 -13.01849 -12.67883 -12.28135 -12.17450 -11.91912 -11.78173 -11.67848 -11.49387 -11.16394 -11.08740 -10.89732 -10.81858 -10.70963 -10.47918 -10.34721 -10.19079 -10.03452 -9.83421 -9.72002 -9.27017 -9.03153 -8.47182 -8.20863 -7.03531 -5.82188 -3.12260 0.44180 1.08116 1.70741 1.85291 1.90379 3.22485 3.39165 3.43526 3.45308 3.45658 3.56141 3.71321 4.52790 4.59555 4.63425 4.73940 4.83231 4.89662 5.08066 5.13382 5.19533 5.21648 5.32383 5.41157 5.54262 5.57095 5.60860 5.68291 5.72713 5.83193 5.85499 5.89988 6.03159 6.06318 6.13491 6.23031 6.24336 6.29594 6.38254 6.42285 6.47990 6.63053 6.70084 6.77139 6.91717 7.63210 7.73365 7.87554 8.35080 8.39684 9.46772 10.02295 10.36909 11.39810 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007313 B = 0.004927 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3827.911947 B = 5681.960138 C = 8334.466597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.139 3.861 3 H 0.078 0.922 4 C -0.139 4.139 5 C 0.167 3.833 6 H 0.075 0.925 7 N -0.711 5.711 8 C -0.245 4.245 9 H 0.071 0.929 10 C -0.008 4.008 11 N -0.928 5.928 12 Si 0.905 3.095 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.286 1.286 16 C 0.069 3.931 17 N -0.581 5.581 18 C 0.618 3.382 19 O -0.542 6.542 20 C -0.043 4.043 21 C 0.078 3.922 22 N -0.284 5.284 23 N -0.166 5.166 24 C 0.158 3.842 25 C -0.107 4.107 26 C -0.097 4.097 27 C -0.119 4.119 28 C -0.103 4.103 29 C -0.110 4.110 30 N -0.185 5.185 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.386 0.614 37 H 0.257 0.743 38 H 0.054 0.946 39 H 0.095 0.905 40 H 0.217 0.783 41 H 0.144 0.856 42 H 0.137 0.863 43 H 0.130 0.870 44 H 0.134 0.866 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.708 -12.227 9.538 17.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.036 3.964 3 H 0.096 0.904 4 C -0.178 4.178 5 C 0.055 3.945 6 H 0.093 0.907 7 N -0.350 5.350 8 C -0.376 4.376 9 H 0.089 0.911 10 C -0.205 4.205 11 N -0.576 5.576 12 Si 0.736 3.264 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.057 4.057 17 N -0.312 5.312 18 C 0.403 3.597 19 O -0.419 6.419 20 C -0.210 4.210 21 C -0.113 4.113 22 N -0.111 5.111 23 N -0.057 5.057 24 C 0.067 3.933 25 C -0.128 4.128 26 C -0.116 4.116 27 C -0.138 4.138 28 C -0.122 4.122 29 C -0.131 4.131 30 N -0.029 5.029 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.220 0.780 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.113 0.887 40 H 0.234 0.766 41 H 0.162 0.838 42 H 0.155 0.845 43 H 0.148 0.852 44 H 0.152 0.848 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.186 -12.796 10.010 18.192 hybrid contribution 0.573 0.794 -0.041 0.980 sum -7.612 -12.002 9.968 17.360 Atomic orbital electron populations 1.22141 0.95199 1.01861 1.02587 1.21551 0.93691 0.96804 0.84337 0.90426 1.23104 0.98361 1.00075 0.96297 1.21366 0.87008 0.94422 0.91732 0.90747 1.42322 1.00063 1.05473 1.87171 1.19169 0.83186 0.91941 1.43344 0.91068 1.24745 0.97843 0.95345 1.02537 1.69648 1.29129 1.02142 1.56656 0.86312 0.84447 0.77834 0.77844 1.21115 1.21693 1.21287 1.23614 0.95075 0.86282 1.00746 1.48201 1.50526 1.28551 1.03950 1.16230 0.80027 0.83106 0.80320 1.90764 1.41246 1.26695 1.83155 1.23002 1.05594 0.96841 0.95523 1.25085 0.97128 0.97777 0.91335 1.77946 1.13692 1.03943 1.15560 1.48352 1.37250 1.20156 0.99982 1.17399 0.95734 0.84876 0.95261 1.21084 0.97826 0.94837 0.99030 1.21095 0.97132 0.95907 0.97479 1.21324 0.99797 1.00091 0.92606 1.21024 0.97152 0.94252 0.99776 1.20902 0.99653 0.98017 0.94556 1.74020 1.09953 1.10397 1.08550 0.92825 0.91475 0.91819 0.89640 0.90712 0.78027 0.93356 0.92759 0.88697 0.76649 0.83775 0.84519 0.85221 0.84845 0.84278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.10 37.16 0.34 -1.85 16 2 C 0.14 2.26 3.45 -66.95 -0.23 2.02 16 3 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 4 C -0.14 -2.13 6.08 -24.90 -0.15 -2.28 16 5 C 0.17 3.08 3.72 -65.78 -0.24 2.84 16 6 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 7 N -0.71 -16.97 5.23 -51.35 -0.27 -17.24 16 8 C -0.25 -6.51 9.96 -15.06 -0.15 -6.66 16 9 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 10 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 11 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 12 Si 0.90 21.99 29.55 -169.99 -5.02 16.97 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 C 0.07 1.21 5.83 -2.53 -0.01 1.19 16 17 N -0.58 -10.33 3.06 -164.15 -0.50 -10.83 16 18 C 0.62 11.46 7.65 -12.37 -0.09 11.36 16 19 O -0.54 -10.70 15.95 5.30 0.08 -10.62 16 20 C -0.04 -0.74 6.93 -82.99 -0.58 -1.31 16 21 C 0.08 1.16 11.91 -16.91 -0.20 0.96 16 22 N -0.28 -4.35 11.90 30.85 0.37 -3.98 16 23 N -0.17 -2.66 4.44 32.48 0.14 -2.51 16 24 C 0.16 2.21 6.74 -83.60 -0.56 1.64 16 25 C -0.11 -1.37 9.61 -39.40 -0.38 -1.75 16 26 C -0.10 -0.98 10.04 -39.61 -0.40 -1.38 16 27 C -0.12 -1.03 10.04 -39.55 -0.40 -1.42 16 28 C -0.10 -0.92 10.04 -39.61 -0.40 -1.32 16 29 C -0.11 -1.26 9.65 -39.40 -0.38 -1.64 16 30 N -0.19 -3.20 8.35 33.29 0.28 -2.92 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.02 6.90 -51.93 -0.36 0.66 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.07 0.94 7.85 -51.93 -0.41 0.54 16 36 H 0.39 10.08 7.86 -40.82 -0.32 9.76 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.09 1.89 6.19 -51.93 -0.32 1.57 16 40 H 0.22 2.45 8.06 -52.49 -0.42 2.03 16 41 H 0.14 1.95 7.67 -52.48 -0.40 1.55 16 42 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 45 H 0.14 1.51 7.67 -52.49 -0.40 1.11 16 LS Contribution 380.44 15.07 5.73 5.73 Total: -1.00 -32.64 380.44 -8.39 -41.03 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -5.99 Total: 11.32 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -3.94 Total: 0.08 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: 0.74 Total: -64.52 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.64 -8.39 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989776656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.386 kcal (2) G-P(sol) polarization free energy of solvation -32.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds