Wall clock time and date at job start Sat Apr 11 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.99578 * 2 1 4 4 C 1.54326 * 109.88463 * 238.89860 * 2 1 3 5 5 C 1.55153 * 102.94211 * 218.39299 * 4 2 1 6 6 H 1.09000 * 111.00471 * 153.61792 * 5 4 2 7 7 N 1.46504 * 111.00129 * 277.42718 * 5 4 2 8 8 C 1.36943 * 119.99781 * 205.00317 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7 12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7 13 13 H 1.48496 * 109.47031 * 59.99836 * 12 10 8 14 14 H 1.48497 * 109.47267 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47169 * 300.00118 * 12 10 8 16 16 C 1.54906 * 101.58297 * 35.50209 * 5 4 2 17 17 N 1.47023 * 109.87964 * 121.09270 * 2 1 3 18 18 C 1.34777 * 125.65309 * 298.31322 * 17 2 1 19 19 O 1.21571 * 119.99611 * 0.02562 * 18 17 2 20 20 C 1.47751 * 120.00612 * 179.97438 * 18 17 2 21 21 C 1.40600 * 126.04890 * 179.97438 * 20 18 17 22 22 N 1.31242 * 106.62741 * 179.97438 * 21 20 18 23 23 N 1.40108 * 107.18044 * 359.97438 * 22 21 20 24 24 C 1.40143 * 125.57207 * 179.97438 * 23 22 21 25 25 C 1.38857 * 120.07031 * 179.70160 * 24 23 22 26 26 C 1.38107 * 119.92984 * 179.75028 * 25 24 23 27 27 C 1.38288 * 120.06959 * 0.55337 * 26 25 24 28 28 C 1.38284 * 120.13462 * 359.70118 * 27 26 25 29 29 C 1.38113 * 120.06916 * 0.02562 * 28 27 26 30 30 N 1.28709 * 108.85841 * 359.76954 * 23 22 21 31 31 H 1.09002 * 109.46729 * 181.09823 * 1 2 3 32 32 H 1.08997 * 109.47153 * 301.10044 * 1 2 3 33 33 H 1.08998 * 109.46547 * 61.10059 * 1 2 3 34 34 H 1.09003 * 110.71326 * 100.02479 * 4 2 1 35 35 H 1.09000 * 110.71754 * 336.76123 * 4 2 1 36 36 H 0.97000 * 120.00410 * 25.00642 * 7 5 4 37 37 H 0.96995 * 120.00147 * 180.02562 * 11 10 8 38 38 H 1.09006 * 110.36600 * 81.83239 * 16 5 4 39 39 H 1.09005 * 110.36448 * 204.14668 * 16 5 4 40 40 H 1.07996 * 126.68251 * 359.97438 * 21 20 18 41 41 H 1.08003 * 120.03257 * 0.02562 * 25 24 23 42 42 H 1.08002 * 119.97208 * 180.29626 * 26 25 24 43 43 H 1.07998 * 119.93352 * 179.72631 * 27 26 25 44 44 H 1.08002 * 119.96125 * 180.02562 * 28 27 26 45 45 H 1.07997 * 120.03153 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2426 5 6 3.2876 -1.5143 -0.6922 6 1 3.4857 -2.4108 -1.2798 7 7 4.4674 -0.6468 -0.6492 8 6 5.7218 -1.1941 -0.6985 9 1 5.8413 -2.2652 -0.7686 10 6 6.8397 -0.3725 -0.6519 11 7 6.6941 0.9327 -0.5659 12 14 8.5508 -1.1195 -0.7113 13 1 8.7159 -1.8786 -1.9769 14 1 9.5658 -0.0374 -0.6477 15 1 8.7310 -2.0364 0.4429 16 6 2.8145 -1.8794 0.7370 17 7 2.0300 -0.7140 1.1840 18 6 1.8086 -0.3611 2.4658 19 8 1.1438 0.6248 2.7186 20 6 2.3730 -1.1730 3.5637 21 6 2.2231 -0.9229 4.9391 22 7 2.8743 -1.8739 5.5669 23 7 3.4264 -2.7123 4.5894 24 6 4.2011 -3.8535 4.8372 25 6 4.6876 -4.6077 3.7777 26 6 5.4552 -5.7288 4.0251 27 6 5.7298 -6.1071 5.3266 28 6 5.2424 -5.3610 6.3839 29 6 4.4789 -4.2356 6.1429 30 7 3.1021 -2.2655 3.4267 31 1 -0.3633 -1.0275 0.0197 32 1 -0.3633 0.5308 0.8799 33 1 -0.3632 0.4966 -0.8997 34 1 2.3530 -0.0461 -2.0200 35 1 1.3051 -1.4460 -1.6182 36 1 4.3601 0.3151 -0.5858 37 1 7.4753 1.5068 -0.5337 38 1 2.1886 -2.7715 0.7130 39 1 3.6716 -2.0338 1.3924 40 1 1.6783 -0.1072 5.3909 41 1 4.4697 -4.3153 2.7611 42 1 5.8379 -6.3132 3.2014 43 1 6.3266 -6.9867 5.5176 44 1 5.4589 -5.6588 7.3992 45 1 4.0989 -3.6532 6.9691 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989776656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:31 Heat of formation + Delta-G solvation = 109.874588 kcal Electronic energy + Delta-G solvation = -29788.209160 eV Core-core repulsion = 25808.354087 eV Total energy + Delta-G solvation = -3979.855074 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.87266 -41.12880 -40.13036 -38.76929 -35.82746 -34.97583 -34.01017 -33.14964 -32.53648 -31.94521 -30.48671 -30.12658 -26.85189 -26.17962 -25.66993 -24.81605 -23.70841 -22.54580 -22.38163 -21.46464 -20.31055 -19.33184 -19.27826 -18.10812 -17.71933 -17.44795 -17.18810 -16.45786 -16.34911 -16.29093 -15.57790 -15.46570 -15.36052 -15.08603 -14.90123 -14.56599 -14.46650 -14.23793 -13.93775 -13.54458 -13.35140 -13.26420 -13.13320 -12.88021 -12.72536 -12.62246 -12.56616 -12.27806 -12.23222 -12.09949 -11.96007 -11.82363 -11.64856 -11.49484 -11.35713 -11.25310 -10.97288 -10.08751 -9.75594 -9.38300 -8.98906 -7.94168 -5.22667 -0.60171 0.27205 0.51307 0.75314 0.81409 1.45083 1.47679 1.53366 1.88944 2.11412 2.52993 2.54953 2.69820 3.35973 3.39028 3.67732 3.81206 3.82662 3.87142 3.91708 3.93899 4.12868 4.14812 4.32446 4.34997 4.38166 4.40224 4.48122 4.54399 4.70602 4.76328 4.77725 4.83715 4.97126 5.00402 5.11552 5.19862 5.20570 5.23334 5.29737 5.35620 5.44064 5.45603 5.53528 5.55075 5.90780 6.26553 6.40811 6.56306 6.98395 7.33266 8.08312 8.30679 9.29121 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007313 B = 0.004927 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3827.911947 B = 5681.960138 C = 8334.466597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.133 3.867 3 H 0.050 0.950 4 C -0.123 4.123 5 C 0.157 3.843 6 H 0.089 0.911 7 N -0.724 5.724 8 C -0.234 4.234 9 H 0.083 0.917 10 C -0.075 4.075 11 N -0.971 5.971 12 Si 0.966 3.034 13 H -0.271 1.271 14 H -0.302 1.302 15 H -0.281 1.281 16 C 0.081 3.919 17 N -0.585 5.585 18 C 0.612 3.388 19 O -0.562 6.562 20 C -0.071 4.071 21 C 0.081 3.919 22 N -0.290 5.290 23 N -0.162 5.162 24 C 0.116 3.884 25 C -0.126 4.126 26 C -0.100 4.100 27 C -0.105 4.105 28 C -0.096 4.096 29 C -0.116 4.116 30 N -0.197 5.197 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.370 0.630 37 H 0.248 0.752 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.244 0.756 41 H 0.126 0.874 42 H 0.159 0.841 43 H 0.168 0.832 44 H 0.169 0.831 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.742 -15.379 10.047 20.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.030 3.970 3 H 0.068 0.932 4 C -0.161 4.161 5 C 0.046 3.954 6 H 0.107 0.893 7 N -0.362 5.362 8 C -0.365 4.365 9 H 0.101 0.899 10 C -0.267 4.267 11 N -0.622 5.622 12 Si 0.795 3.205 13 H -0.197 1.197 14 H -0.229 1.229 15 H -0.208 1.208 16 C -0.044 4.044 17 N -0.316 5.316 18 C 0.398 3.602 19 O -0.441 6.441 20 C -0.236 4.236 21 C -0.109 4.109 22 N -0.117 5.117 23 N -0.055 5.055 24 C 0.026 3.974 25 C -0.147 4.147 26 C -0.118 4.118 27 C -0.124 4.124 28 C -0.114 4.114 29 C -0.137 4.137 30 N -0.043 5.043 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.132 0.868 36 H 0.202 0.798 37 H 0.057 0.943 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.260 0.740 41 H 0.144 0.856 42 H 0.176 0.824 43 H 0.185 0.815 44 H 0.186 0.814 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.260 -16.010 10.505 20.854 hybrid contribution 0.590 1.599 -0.131 1.710 sum -7.670 -14.411 10.373 19.342 Atomic orbital electron populations 1.22039 0.92796 1.02783 1.02927 1.21677 0.95547 0.95450 0.84279 0.93177 1.23034 0.97465 1.00128 0.95482 1.21669 0.86468 0.94587 0.92630 0.89273 1.42507 1.01061 1.05319 1.87310 1.19615 0.84277 0.92418 1.40226 0.89899 1.25513 1.01492 0.95730 1.04007 1.69821 1.29320 1.03499 1.59536 0.85320 0.80069 0.76754 0.78324 1.19695 1.22887 1.20759 1.23402 0.94736 0.87172 0.99123 1.48322 1.50389 1.28672 1.04225 1.16451 0.79867 0.83035 0.80820 1.90733 1.42264 1.27523 1.83545 1.22982 1.06970 0.97535 0.96140 1.25530 0.96791 0.98159 0.90449 1.77912 1.14025 1.04133 1.15625 1.48666 1.36775 1.20444 0.99649 1.17895 0.97518 0.85212 0.96765 1.21141 0.99248 0.96213 0.98074 1.21431 0.96210 0.94946 0.99242 1.21801 0.98485 1.00521 0.91571 1.21474 0.95420 0.92774 1.01755 1.21112 1.00104 0.99017 0.93466 1.73957 1.10179 1.10648 1.09471 0.91409 0.93301 0.89397 0.90049 0.86838 0.79827 0.94342 0.90084 0.91296 0.73972 0.85561 0.82387 0.81455 0.81372 0.84225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.10 71.98 0.65 -3.17 16 2 C 0.13 4.28 3.45 45.34 0.16 4.44 16 3 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 4 C -0.12 -3.54 6.08 31.78 0.19 -3.35 16 5 C 0.16 5.65 3.72 46.38 0.17 5.82 16 6 H 0.09 2.97 8.09 -2.39 -0.02 2.95 16 7 N -0.72 -35.03 5.23 -316.37 -1.66 -36.69 16 8 C -0.23 -12.45 9.96 84.03 0.84 -11.62 16 9 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 10 C -0.08 -4.28 5.50 84.86 0.47 -3.82 16 11 N -0.97 -59.99 13.06 21.65 0.28 -59.71 16 12 Si 0.97 45.77 29.55 68.60 2.03 47.79 16 13 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 14 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 15 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 16 C 0.08 2.83 5.83 86.85 0.51 3.33 16 17 N -0.59 -21.02 3.06 -791.51 -2.43 -23.45 16 18 C 0.61 23.37 7.65 86.76 0.66 24.03 16 19 O -0.56 -22.89 15.95 -3.94 -0.06 -22.95 16 20 C -0.07 -2.53 6.93 42.20 0.29 -2.24 16 21 C 0.08 2.45 11.91 85.36 1.02 3.47 16 22 N -0.29 -9.00 11.90 -56.32 -0.67 -9.67 16 23 N -0.16 -5.34 4.44 -51.14 -0.23 -5.57 16 24 C 0.12 3.25 6.74 38.11 0.26 3.51 16 25 C -0.13 -3.21 9.61 22.39 0.22 -3.00 16 26 C -0.10 -1.79 10.04 22.25 0.22 -1.57 16 27 C -0.11 -1.41 10.04 22.29 0.22 -1.19 16 28 C -0.10 -1.40 10.04 22.25 0.22 -1.18 16 29 C -0.12 -2.52 9.65 22.39 0.22 -2.31 16 30 N -0.20 -7.04 8.35 -48.60 -0.41 -7.44 16 31 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.05 1.46 6.90 -2.39 -0.02 1.44 16 33 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.11 2.44 7.85 -2.39 -0.02 2.42 16 36 H 0.37 20.03 7.86 -92.71 -0.73 19.30 16 37 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 38 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 39 H 0.07 2.81 6.19 -2.38 -0.01 2.80 16 40 H 0.24 5.53 8.06 -2.91 -0.02 5.50 16 41 H 0.13 3.57 7.67 -2.91 -0.02 3.55 16 42 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 43 H 0.17 1.04 8.06 -2.91 -0.02 1.01 16 44 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 45 H 0.14 2.93 7.67 -2.91 -0.02 2.91 16 Total: -1.00 -74.00 380.44 3.47 -70.53 By element: Atomic # 1 Polarization: 35.69 SS G_CDS: 0.29 Total: 35.98 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 6.32 Total: 11.17 kcal Atomic # 7 Polarization: -137.42 SS G_CDS: -5.10 Total: -142.52 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.06 Total: -22.95 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -74.00 3.47 -70.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989776656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.400 kcal (2) G-P(sol) polarization free energy of solvation -73.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds