Wall clock time and date at job start Sat Apr 11 2020 06:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.41447 * 2 1 4 4 C 1.54913 * 110.36386 * 122.29515 * 2 1 3 5 5 C 1.55159 * 101.58019 * 155.84975 * 4 2 1 6 6 H 1.09003 * 110.72292 * 83.03510 * 5 4 2 7 7 N 1.46499 * 110.71932 * 206.13565 * 5 4 2 8 8 C 1.36939 * 119.99547 * 204.99902 * 7 5 4 9 9 H 1.07993 * 120.00716 * 359.97438 * 8 7 5 10 10 C 1.38817 * 119.99459 * 179.97438 * 8 7 5 11 11 N 1.31619 * 120.00154 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99635 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47297 * 269.99668 * 12 10 8 14 14 H 1.48503 * 109.47261 * 149.99848 * 12 10 8 15 15 H 1.48500 * 109.47454 * 29.99841 * 12 10 8 16 16 C 1.54326 * 102.93996 * 324.49490 * 5 4 2 17 17 N 1.47027 * 107.27169 * 22.19573 * 16 5 4 18 18 C 1.34769 * 125.64777 * 181.02424 * 17 16 5 19 19 O 1.21561 * 120.00056 * 180.02562 * 18 17 16 20 20 C 1.47763 * 120.00286 * 0.03593 * 18 17 16 21 21 C 1.40593 * 126.04883 * 179.97438 * 20 18 17 22 22 N 1.31246 * 106.63094 * 180.02562 * 21 20 18 23 23 N 1.40111 * 107.17523 * 0.02562 * 22 21 20 24 24 C 1.40134 * 125.56840 * 180.02562 * 23 22 21 25 25 C 1.38854 * 120.07071 * 179.69827 * 24 23 22 26 26 C 1.38112 * 119.93346 * 179.74052 * 25 24 23 27 27 C 1.38282 * 120.06690 * 0.55047 * 26 25 24 28 28 C 1.38279 * 120.14088 * 359.69963 * 27 26 25 29 29 C 1.38120 * 120.06732 * 0.02562 * 28 27 26 30 30 N 1.28705 * 108.85996 * 359.72682 * 23 22 21 31 31 H 1.08998 * 109.47420 * 297.70493 * 1 2 3 32 32 H 1.08991 * 109.47233 * 57.70420 * 1 2 3 33 33 H 1.09004 * 109.46877 * 177.70738 * 1 2 3 34 34 H 1.08995 * 111.00706 * 37.77443 * 4 2 1 35 35 H 1.08998 * 111.03448 * 273.93361 * 4 2 1 36 36 H 0.96998 * 120.00185 * 24.99285 * 7 5 4 37 37 H 0.96993 * 120.00007 * 0.02562 * 11 10 8 38 38 H 1.09004 * 109.88001 * 141.61294 * 16 5 4 39 39 H 1.08994 * 109.88325 * 262.77656 * 16 5 4 40 40 H 1.08004 * 126.68448 * 0.04013 * 21 20 18 41 41 H 1.08006 * 120.03157 * 359.97438 * 25 24 23 42 42 H 1.08004 * 119.96890 * 180.29087 * 26 25 24 43 43 H 1.08005 * 119.92859 * 179.72103 * 27 26 25 44 44 H 1.07997 * 119.97320 * 180.02562 * 28 27 26 45 45 H 1.07993 * 120.03638 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0691 -0.7759 1.2276 5 6 3.4778 -1.1998 0.7342 6 1 4.1952 -0.3913 0.8751 7 7 3.9249 -2.4129 1.4231 8 6 5.2630 -2.6763 1.5465 9 1 5.9887 -1.9900 1.1358 10 6 5.6867 -3.8256 2.1997 11 7 4.8024 -4.6618 2.7007 12 14 7.5121 -4.1853 2.3675 13 1 7.9696 -4.9797 1.1992 14 1 7.7523 -4.9554 3.6143 15 1 8.2656 -2.9069 2.4225 16 6 3.2493 -1.4769 -0.7667 17 7 2.0430 -0.7384 -1.1682 18 6 1.4972 -0.7364 -2.4004 19 8 0.4942 -0.0855 -2.6198 20 6 2.1177 -1.5254 -3.4848 21 6 1.6576 -1.6151 -4.8103 22 7 2.4871 -2.4116 -5.4427 23 7 3.4582 -2.8167 -4.5175 24 6 4.5333 -3.6742 -4.7870 25 6 5.4353 -3.9963 -3.7816 26 6 6.4908 -4.8459 -4.0489 27 6 6.6564 -5.3667 -5.3192 28 6 5.7629 -5.0438 -6.3239 29 6 4.7020 -4.1992 -6.0615 30 7 3.2051 -2.2676 -3.3814 31 1 -0.3634 0.4778 0.9098 32 1 -0.3633 0.5490 -0.8686 33 1 -0.3633 -1.0269 -0.0411 34 1 1.4510 -1.6480 1.4409 35 1 2.1398 -0.1269 2.1005 36 1 3.2732 -3.0295 1.7917 37 1 3.8546 -4.4752 2.6133 38 1 4.1065 -1.1280 -1.3427 39 1 3.1013 -2.5446 -0.9282 40 1 0.7906 -1.1240 -5.2269 41 1 5.3094 -3.5857 -2.7906 42 1 7.1900 -5.1006 -3.2662 43 1 7.4852 -6.0274 -5.5269 44 1 5.8945 -5.4524 -7.3149 45 1 4.0043 -3.9477 -6.8464 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989776658.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:41 Heat of formation + Delta-G solvation = 130.770483 kcal Electronic energy + Delta-G solvation = -29594.300799 eV Core-core repulsion = 25615.351839 eV Total energy + Delta-G solvation = -3978.948960 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.77829 -39.93669 -39.25642 -37.41257 -34.51655 -33.99336 -32.88025 -31.55511 -31.41366 -31.05688 -29.49032 -28.20963 -25.60902 -24.93543 -23.91129 -23.57664 -22.55395 -21.49927 -21.24536 -20.43888 -19.18365 -18.30957 -17.48694 -16.75193 -16.58562 -16.45973 -16.12857 -15.42291 -15.27746 -14.72085 -14.51716 -14.22907 -14.16371 -13.76591 -13.67385 -13.50252 -13.39473 -13.05714 -12.82852 -12.30192 -12.21285 -11.98140 -11.86934 -11.75769 -11.56999 -11.20169 -11.02990 -10.93501 -10.90581 -10.70867 -10.59273 -10.37242 -10.27804 -10.08046 -9.78298 -9.27154 -9.24711 -9.03254 -8.55190 -8.34570 -7.18733 -6.19719 -3.21892 0.39739 1.10339 1.60549 1.77159 1.80102 3.04141 3.28737 3.44767 3.49211 3.54388 3.60157 3.63799 4.46668 4.59342 4.65065 4.70479 4.75009 4.89089 5.02074 5.08910 5.11852 5.14172 5.22014 5.38913 5.41800 5.48091 5.56896 5.62408 5.73679 5.75639 5.79327 5.81764 5.98630 6.04648 6.07040 6.12625 6.21091 6.26913 6.32014 6.37878 6.39731 6.49283 6.61152 6.76206 6.81628 7.60245 7.68763 7.73550 8.20880 8.65418 9.09553 9.96273 10.10061 11.27975 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.006656 B = 0.005275 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4205.643256 B = 5307.271877 C = 9239.271637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.138 3.862 3 H 0.077 0.923 4 C -0.139 4.139 5 C 0.176 3.824 6 H 0.069 0.931 7 N -0.723 5.723 8 C -0.337 4.337 9 H 0.067 0.933 10 C -0.040 4.040 11 N -0.940 5.940 12 Si 1.080 2.920 13 H -0.295 1.295 14 H -0.287 1.287 15 H -0.294 1.294 16 C 0.082 3.918 17 N -0.594 5.594 18 C 0.618 3.382 19 O -0.539 6.539 20 C -0.054 4.054 21 C 0.077 3.923 22 N -0.284 5.284 23 N -0.160 5.160 24 C 0.151 3.849 25 C -0.104 4.104 26 C -0.095 4.095 27 C -0.116 4.116 28 C -0.105 4.105 29 C -0.110 4.110 30 N -0.184 5.184 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.370 0.630 37 H 0.256 0.744 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.217 0.783 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.813 3.875 -15.599 16.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.095 0.905 4 C -0.178 4.178 5 C 0.064 3.936 6 H 0.087 0.913 7 N -0.364 5.364 8 C -0.468 4.468 9 H 0.085 0.915 10 C -0.238 4.238 11 N -0.585 5.585 12 Si 0.911 3.089 13 H -0.222 1.222 14 H -0.213 1.213 15 H -0.220 1.220 16 C -0.044 4.044 17 N -0.326 5.326 18 C 0.403 3.597 19 O -0.416 6.416 20 C -0.220 4.220 21 C -0.114 4.114 22 N -0.111 5.111 23 N -0.053 5.053 24 C 0.060 3.940 25 C -0.124 4.124 26 C -0.114 4.114 27 C -0.135 4.135 28 C -0.124 4.124 29 C -0.131 4.131 30 N -0.028 5.028 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.204 0.796 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.234 0.766 41 H 0.165 0.835 42 H 0.158 0.842 43 H 0.149 0.851 44 H 0.152 0.848 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.082 2.468 -15.534 15.729 hybrid contribution -1.963 1.380 -0.418 2.436 sum -2.046 3.849 -15.953 16.537 Atomic orbital electron populations 1.22139 0.94009 1.02762 1.02951 1.21921 0.94971 0.95381 0.84190 0.90494 1.23209 0.97947 1.00343 0.96330 1.21155 0.93087 0.90795 0.88606 0.91262 1.42377 1.05160 1.22662 1.66186 1.20073 0.83168 1.08055 1.35515 0.91517 1.25762 1.06783 0.93447 0.97783 1.70853 1.01792 1.38170 1.47656 0.83233 0.73840 0.75273 0.76553 1.22238 1.21343 1.22046 1.23350 0.84934 0.96780 0.99299 1.48446 1.28595 1.47348 1.08224 1.16285 0.82891 0.80365 0.80121 1.90731 1.24889 1.44211 1.81765 1.23012 0.96605 1.05607 0.96795 1.25085 0.99252 0.95745 0.91332 1.77971 1.00697 1.15891 1.16544 1.48362 1.20213 1.33608 1.03079 1.17418 0.86645 0.94112 0.95797 1.21172 0.93544 0.98360 0.99373 1.21178 0.97102 0.95723 0.97385 1.21360 0.99402 0.99698 0.93041 1.21022 0.93993 0.97496 0.99870 1.20881 0.99496 0.98120 0.94588 1.74082 1.14447 1.06062 1.08183 0.92089 0.89928 0.92705 0.90665 0.89967 0.79642 0.93266 0.91886 0.90598 0.76643 0.83492 0.84207 0.85111 0.84829 0.84351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 8.59 37.16 0.32 -1.87 16 2 C 0.14 2.02 3.77 -66.42 -0.25 1.77 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.14 -2.17 6.13 -24.58 -0.15 -2.32 16 5 C 0.18 3.31 3.61 -66.09 -0.24 3.07 16 6 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 7 N -0.72 -16.95 5.15 -51.65 -0.27 -17.22 16 8 C -0.34 -8.89 9.96 -15.06 -0.15 -9.04 16 9 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 10 C -0.04 -1.09 5.50 -17.43 -0.10 -1.19 16 11 N -0.94 -27.90 13.70 55.49 0.76 -27.14 16 12 Si 1.08 24.73 29.92 -169.99 -5.09 19.64 16 13 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 16 C 0.08 1.48 5.28 -3.06 -0.02 1.46 16 17 N -0.59 -9.75 3.24 -164.18 -0.53 -10.28 16 18 C 0.62 10.26 7.64 -12.37 -0.09 10.17 16 19 O -0.54 -9.32 14.62 5.31 0.08 -9.25 16 20 C -0.05 -0.85 6.95 -82.99 -0.58 -1.43 16 21 C 0.08 1.03 11.91 -16.91 -0.20 0.83 16 22 N -0.28 -4.07 11.90 30.85 0.37 -3.70 16 23 N -0.16 -2.49 4.44 32.48 0.14 -2.34 16 24 C 0.15 2.11 6.74 -83.60 -0.56 1.55 16 25 C -0.10 -1.44 9.61 -39.40 -0.38 -1.81 16 26 C -0.10 -1.08 10.04 -39.61 -0.40 -1.48 16 27 C -0.12 -1.08 10.04 -39.55 -0.40 -1.47 16 28 C -0.11 -0.96 10.04 -39.61 -0.40 -1.35 16 29 C -0.11 -1.25 9.65 -39.39 -0.38 -1.63 16 30 N -0.18 -3.05 8.75 33.29 0.29 -2.76 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.21 6.09 -51.93 -0.32 0.90 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 1.23 7.92 -51.93 -0.41 0.81 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.37 9.05 6.59 -40.82 -0.27 8.78 16 37 H 0.26 7.50 6.77 -40.82 -0.28 7.23 16 38 H 0.06 1.15 7.75 -51.93 -0.40 0.75 16 39 H 0.08 1.53 7.53 -51.93 -0.39 1.14 16 40 H 0.22 2.12 8.06 -52.48 -0.42 1.69 16 41 H 0.15 2.29 7.67 -52.48 -0.40 1.89 16 42 H 0.14 1.42 8.06 -52.48 -0.42 1.00 16 43 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 44 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 45 H 0.14 1.45 7.67 -52.49 -0.40 1.05 16 LS Contribution 377.21 15.07 5.68 5.68 Total: -1.00 -31.73 377.21 -8.41 -40.14 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -5.88 Total: 11.97 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -3.97 Total: -4.74 kcal Atomic # 7 Polarization: -64.21 SS G_CDS: 0.76 Total: -63.45 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.08 Total: -9.25 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -5.09 Total: 19.64 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.73 -8.41 -40.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989776658.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.911 kcal (2) G-P(sol) polarization free energy of solvation -31.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds