Wall clock time and date at job start Sat Apr 11 2020 06:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.41525 * 2 1 4 4 C 1.54914 * 110.36564 * 122.29114 * 2 1 3 5 5 C 1.55152 * 101.58302 * 155.84891 * 4 2 1 6 6 H 1.08994 * 110.72059 * 82.86062 * 5 4 2 7 7 N 1.46494 * 110.72046 * 206.13778 * 5 4 2 8 8 C 1.36936 * 120.00125 * 199.97283 * 7 5 4 9 9 H 1.08001 * 119.99928 * 0.02562 * 8 7 5 10 10 C 1.38812 * 120.00456 * 179.97438 * 8 7 5 11 11 N 1.31618 * 119.99962 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00153 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46678 * 90.00654 * 12 10 8 14 14 H 1.48500 * 109.46939 * 210.00032 * 12 10 8 15 15 H 1.48497 * 109.46989 * 330.00536 * 12 10 8 16 16 C 1.54330 * 102.93797 * 324.49846 * 5 4 2 17 17 N 1.47012 * 107.40648 * 22.11684 * 16 5 4 18 18 C 1.34774 * 125.65485 * 181.10275 * 17 16 5 19 19 O 1.21510 * 120.00222 * 174.51199 * 18 17 16 20 20 C 1.48165 * 119.99515 * 354.51569 * 18 17 16 21 21 C 1.39950 * 120.89147 * 6.81504 * 20 18 17 22 22 C 1.38039 * 119.13195 * 180.02562 * 21 20 18 23 23 N 1.31852 * 120.98613 * 0.02562 * 22 21 20 24 24 C 1.32223 * 121.96997 * 0.02562 * 23 22 21 25 25 N 1.39849 * 119.62426 * 180.02562 * 24 23 22 26 26 C 1.37177 * 126.48636 * 0.02562 * 25 24 23 27 27 C 1.34613 * 106.82768 * 179.97438 * 26 25 24 28 28 N 1.34155 * 108.22043 * 0.02562 * 27 26 25 29 29 C 1.30483 * 109.37047 * 359.71816 * 28 27 26 30 30 C 1.38910 * 120.75094 * 359.71731 * 24 23 22 31 31 H 1.09004 * 109.47575 * 297.70809 * 1 2 3 32 32 H 1.09001 * 109.47079 * 57.70407 * 1 2 3 33 33 H 1.09002 * 109.47739 * 177.70941 * 1 2 3 34 34 H 1.09008 * 111.00421 * 37.77267 * 4 2 1 35 35 H 1.08997 * 111.03509 * 273.93780 * 4 2 1 36 36 H 0.97001 * 120.00358 * 19.97630 * 7 5 4 37 37 H 0.97002 * 120.00225 * 179.97438 * 11 10 8 38 38 H 1.08998 * 109.88041 * 141.61708 * 16 5 4 39 39 H 1.09004 * 109.88360 * 262.61549 * 16 5 4 40 40 H 1.07999 * 120.43060 * 0.02733 * 21 20 18 41 41 H 1.08001 * 119.50752 * 179.97438 * 22 21 20 42 42 H 1.07999 * 126.58329 * 359.97438 * 26 25 24 43 43 H 1.07998 * 125.89245 * 180.02562 * 27 26 25 44 44 H 1.07994 * 125.72921 * 180.27909 * 29 28 27 45 45 H 1.08000 * 120.52958 * 180.28990 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0691 -0.7759 1.2277 5 6 3.4777 -1.1997 0.7344 6 1 4.1944 -0.3902 0.8723 7 7 3.9248 -2.4128 1.4232 8 6 5.2567 -2.7293 1.4575 9 1 5.9775 -2.0844 0.9771 10 6 5.6805 -3.8785 2.1107 11 7 4.8021 -4.6643 2.6967 12 14 7.4973 -4.3105 2.1568 13 1 8.1214 -3.6974 3.3567 14 1 7.6538 -5.7860 2.2168 15 1 8.1606 -3.7916 0.9338 16 6 3.2492 -1.4769 -0.7666 17 7 2.0424 -0.7412 -1.1709 18 6 1.4975 -0.7426 -2.4036 19 8 0.4407 -0.1766 -2.6014 20 6 2.1873 -1.4345 -3.5175 21 6 3.3287 -2.2101 -3.2847 22 6 3.9429 -2.8385 -4.3493 23 7 3.4700 -2.7167 -5.5741 24 6 2.3956 -1.9938 -5.8411 25 7 1.9362 -1.8987 -7.1585 26 6 2.4929 -2.4947 -8.2616 27 6 1.7375 -2.1415 -9.3183 28 7 0.7459 -1.3515 -8.8798 29 6 0.8502 -1.2029 -7.5876 30 6 1.7142 -1.3329 -4.8269 31 1 -0.3634 0.4778 0.9098 32 1 -0.3633 0.5491 -0.8687 33 1 -0.3635 -1.0268 -0.0411 34 1 1.4510 -1.6480 1.4410 35 1 2.1397 -0.1268 2.1005 36 1 3.2775 -2.9920 1.8551 37 1 5.0982 -5.4675 3.1528 38 1 4.1064 -1.1282 -1.3425 39 1 3.1040 -2.5450 -0.9284 40 1 3.7238 -2.3156 -2.2851 41 1 4.8243 -3.4381 -4.1766 42 1 3.3690 -3.1260 -8.2787 43 1 1.9015 -2.4422 -10.3425 44 1 0.1866 -0.6224 -6.9640 45 1 0.8342 -0.7472 -5.0484 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989808916.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:50 Heat of formation + Delta-G solvation = 119.174229 kcal Electronic energy + Delta-G solvation = -29057.913394 eV Core-core repulsion = 25078.461583 eV Total energy + Delta-G solvation = -3979.451811 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.60090 -40.95746 -39.60699 -37.60383 -34.69356 -34.35971 -33.36066 -31.71089 -31.52716 -30.21879 -29.53641 -28.63226 -26.12928 -25.13387 -24.31550 -23.95883 -22.37928 -21.44045 -21.03635 -20.54574 -19.88152 -18.52815 -17.48886 -17.07673 -16.48811 -16.38730 -16.02514 -15.80417 -15.32909 -14.90393 -14.78887 -14.28777 -14.17649 -14.07434 -13.90248 -13.77383 -13.71943 -13.47515 -13.28654 -12.91478 -12.60136 -12.15086 -12.06333 -11.88537 -11.37540 -11.09997 -11.05916 -10.86269 -10.82588 -10.50898 -10.43694 -10.24861 -10.21032 -10.16616 -9.90085 -9.71648 -9.13530 -9.09643 -8.74858 -8.61232 -7.26669 -5.99714 -3.32229 0.27641 0.47251 1.88239 2.10660 2.74459 2.81835 2.85880 3.29338 3.35025 3.37376 3.53251 3.91212 4.09158 4.30601 4.38510 4.39555 4.58642 4.64111 4.80516 4.86800 5.04703 5.08804 5.13097 5.23203 5.28592 5.30445 5.37676 5.41536 5.45708 5.63961 5.68832 5.71468 5.82898 5.85569 5.91914 5.99265 6.07436 6.21344 6.26318 6.29423 6.40490 6.48237 6.63917 6.81849 7.39386 7.45098 7.49690 7.70301 8.00521 8.17032 9.29480 9.81444 10.15987 11.21708 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012043 B = 0.002936 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.350296 B = 9533.286990 C =11599.979291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.137 3.863 3 H 0.078 0.922 4 C -0.137 4.137 5 C 0.172 3.828 6 H 0.069 0.931 7 N -0.712 5.712 8 C -0.256 4.256 9 H 0.074 0.926 10 C -0.004 4.004 11 N -0.926 5.926 12 Si 0.908 3.092 13 H -0.288 1.288 14 H -0.290 1.290 15 H -0.280 1.280 16 C 0.056 3.944 17 N -0.597 5.597 18 C 0.572 3.428 19 O -0.535 6.535 20 C -0.054 4.054 21 C -0.179 4.179 22 C 0.133 3.867 23 N -0.486 5.486 24 C 0.333 3.667 25 N -0.408 5.408 26 C -0.025 4.025 27 C -0.033 4.033 28 N -0.480 5.480 29 C 0.194 3.806 30 C -0.126 4.126 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.388 0.612 37 H 0.258 0.742 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.189 0.811 41 H 0.177 0.823 42 H 0.182 0.818 43 H 0.176 0.824 44 H 0.212 0.788 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.944 6.962 -13.071 15.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.035 3.965 3 H 0.096 0.904 4 C -0.176 4.176 5 C 0.059 3.941 6 H 0.087 0.913 7 N -0.352 5.352 8 C -0.387 4.387 9 H 0.092 0.908 10 C -0.202 4.202 11 N -0.573 5.573 12 Si 0.738 3.262 13 H -0.215 1.215 14 H -0.217 1.217 15 H -0.205 1.205 16 C -0.070 4.070 17 N -0.329 5.329 18 C 0.359 3.641 19 O -0.413 6.413 20 C -0.065 4.065 21 C -0.198 4.198 22 C -0.024 4.024 23 N -0.198 5.198 24 C 0.105 3.895 25 N -0.091 5.091 26 C -0.155 4.155 27 C -0.178 4.178 28 N -0.196 5.196 29 C -0.088 4.088 30 C -0.149 4.149 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.223 0.777 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.205 0.795 41 H 0.194 0.806 42 H 0.199 0.801 43 H 0.193 0.807 44 H 0.229 0.771 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.489 7.135 -14.342 16.933 hybrid contribution 1.197 -0.662 1.273 1.869 sum -4.292 6.472 -13.069 15.202 Atomic orbital electron populations 1.22149 0.93886 1.02888 1.02869 1.22031 0.95103 0.95314 0.84076 0.90395 1.23173 0.97643 1.00527 0.96262 1.21214 0.93408 0.91320 0.88156 0.91288 1.42397 1.06159 1.23760 1.62868 1.19226 0.83813 1.05530 1.30124 0.90832 1.24789 0.97814 0.97502 1.00070 1.69653 1.32688 1.15308 1.39639 0.86200 0.84598 0.77499 0.77893 1.21519 1.21652 1.20534 1.23889 0.85409 0.96637 1.01024 1.48555 1.28421 1.47463 1.08492 1.17649 0.84447 0.80573 0.81384 1.90719 1.21621 1.45988 1.82983 1.20204 0.95517 0.97373 0.93420 1.24078 0.95157 0.95889 1.04710 1.22726 0.98545 0.95822 0.85351 1.66845 1.11120 1.16718 1.25155 1.17985 0.92463 0.95687 0.83318 1.43118 1.23103 1.38069 1.04762 1.22945 1.03077 1.04137 0.85308 1.22400 0.94515 1.01427 0.99448 1.70344 1.23577 1.17697 1.08026 1.25404 0.90993 1.00219 0.92155 1.21554 1.01443 1.00888 0.90998 0.92099 0.90085 0.92577 0.90270 0.89774 0.77726 0.93168 0.91099 0.89585 0.79504 0.80615 0.80065 0.80680 0.77119 0.82924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 8.51 37.16 0.32 -1.67 16 2 C 0.14 1.74 3.80 -66.24 -0.25 1.49 16 3 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.14 -1.86 6.11 -24.58 -0.15 -2.01 16 5 C 0.17 2.74 3.59 -66.10 -0.24 2.51 16 6 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16 7 N -0.71 -15.05 5.17 -51.66 -0.27 -15.31 16 8 C -0.26 -6.14 9.98 -15.06 -0.15 -6.29 16 9 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 10 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 11 N -0.93 -25.47 13.06 55.49 0.72 -24.74 16 12 Si 0.91 20.28 29.55 -169.99 -5.02 15.25 16 13 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 16 C 0.06 0.78 4.63 -3.07 -0.01 0.77 16 17 N -0.60 -8.12 3.25 -164.15 -0.53 -8.66 16 18 C 0.57 8.14 7.67 -12.18 -0.09 8.05 16 19 O -0.53 -8.53 14.09 5.36 0.08 -8.46 16 20 C -0.05 -0.68 5.90 -104.67 -0.62 -1.30 16 21 C -0.18 -2.08 8.69 -39.01 -0.34 -2.42 16 22 C 0.13 1.46 11.17 -17.62 -0.20 1.26 16 23 N -0.49 -5.96 9.86 -12.34 -0.12 -6.08 16 24 C 0.33 4.07 7.50 -154.42 -1.16 2.91 16 25 N -0.41 -4.80 2.98 -63.84 -0.19 -4.99 16 26 C -0.02 -0.27 11.17 -16.44 -0.18 -0.45 16 27 C -0.03 -0.36 11.85 -17.82 -0.21 -0.57 16 28 N -0.48 -5.99 11.24 -14.47 -0.16 -6.16 16 29 C 0.19 2.16 11.90 -89.58 -1.07 1.09 16 30 C -0.13 -1.50 9.07 -38.83 -0.35 -1.85 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.11 6.11 -51.93 -0.32 0.79 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 1.15 7.92 -51.92 -0.41 0.74 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.39 8.95 7.71 -40.82 -0.31 8.64 16 37 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.07 0.91 6.76 -51.93 -0.35 0.56 16 39 H 0.09 1.31 6.63 -51.93 -0.34 0.97 16 40 H 0.19 2.20 2.93 -52.96 -0.16 2.05 16 41 H 0.18 1.47 8.06 -52.49 -0.42 1.04 16 42 H 0.18 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 44 H 0.21 1.69 7.04 -52.49 -0.37 1.32 16 45 H 0.15 1.62 6.45 -52.49 -0.34 1.28 16 LS Contribution 370.12 15.07 5.58 5.58 Total: -1.00 -30.17 370.12 -10.25 -40.43 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -5.53 Total: 11.84 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -4.80 Total: 1.30 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: -0.55 Total: -65.94 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.08 Total: -8.46 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.17 -10.25 -40.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989808916.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.600 kcal (2) G-P(sol) polarization free energy of solvation -30.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds