Wall clock time and date at job start Sat Apr 11 2020 06:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.41525 * 2 1 4 4 C 1.54914 * 110.36564 * 122.29114 * 2 1 3 5 5 C 1.55152 * 101.58302 * 155.84891 * 4 2 1 6 6 H 1.08994 * 110.72059 * 82.86062 * 5 4 2 7 7 N 1.46494 * 110.72046 * 206.13778 * 5 4 2 8 8 C 1.36936 * 120.00125 * 199.97283 * 7 5 4 9 9 H 1.08001 * 119.99928 * 0.02562 * 8 7 5 10 10 C 1.38812 * 120.00456 * 179.97438 * 8 7 5 11 11 N 1.31618 * 119.99962 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00153 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46678 * 90.00654 * 12 10 8 14 14 H 1.48500 * 109.46939 * 210.00032 * 12 10 8 15 15 H 1.48497 * 109.46989 * 330.00536 * 12 10 8 16 16 C 1.54330 * 102.93797 * 324.49846 * 5 4 2 17 17 N 1.47012 * 107.40648 * 22.11684 * 16 5 4 18 18 C 1.34774 * 125.65485 * 181.10275 * 17 16 5 19 19 O 1.21510 * 120.00222 * 174.51199 * 18 17 16 20 20 C 1.48165 * 119.99515 * 354.51569 * 18 17 16 21 21 C 1.39950 * 120.89147 * 6.81504 * 20 18 17 22 22 C 1.38039 * 119.13195 * 180.02562 * 21 20 18 23 23 N 1.31852 * 120.98613 * 0.02562 * 22 21 20 24 24 C 1.32223 * 121.96997 * 0.02562 * 23 22 21 25 25 N 1.39849 * 119.62426 * 180.02562 * 24 23 22 26 26 C 1.37177 * 126.48636 * 0.02562 * 25 24 23 27 27 C 1.34613 * 106.82768 * 179.97438 * 26 25 24 28 28 N 1.34155 * 108.22043 * 0.02562 * 27 26 25 29 29 C 1.30483 * 109.37047 * 359.71816 * 28 27 26 30 30 C 1.38910 * 120.75094 * 359.71731 * 24 23 22 31 31 H 1.09004 * 109.47575 * 297.70809 * 1 2 3 32 32 H 1.09001 * 109.47079 * 57.70407 * 1 2 3 33 33 H 1.09002 * 109.47739 * 177.70941 * 1 2 3 34 34 H 1.09008 * 111.00421 * 37.77267 * 4 2 1 35 35 H 1.08997 * 111.03509 * 273.93780 * 4 2 1 36 36 H 0.97001 * 120.00358 * 19.97630 * 7 5 4 37 37 H 0.97002 * 120.00225 * 179.97438 * 11 10 8 38 38 H 1.08998 * 109.88041 * 141.61708 * 16 5 4 39 39 H 1.09004 * 109.88360 * 262.61549 * 16 5 4 40 40 H 1.07999 * 120.43060 * 0.02733 * 21 20 18 41 41 H 1.08001 * 119.50752 * 179.97438 * 22 21 20 42 42 H 1.07999 * 126.58329 * 359.97438 * 26 25 24 43 43 H 1.07998 * 125.89245 * 180.02562 * 27 26 25 44 44 H 1.07994 * 125.72921 * 180.27909 * 29 28 27 45 45 H 1.08000 * 120.52958 * 180.28990 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0691 -0.7759 1.2277 5 6 3.4777 -1.1997 0.7344 6 1 4.1944 -0.3902 0.8723 7 7 3.9248 -2.4128 1.4232 8 6 5.2567 -2.7293 1.4575 9 1 5.9775 -2.0844 0.9771 10 6 5.6805 -3.8785 2.1107 11 7 4.8021 -4.6643 2.6967 12 14 7.4973 -4.3105 2.1568 13 1 8.1214 -3.6974 3.3567 14 1 7.6538 -5.7860 2.2168 15 1 8.1606 -3.7916 0.9338 16 6 3.2492 -1.4769 -0.7666 17 7 2.0424 -0.7412 -1.1709 18 6 1.4975 -0.7426 -2.4036 19 8 0.4407 -0.1766 -2.6014 20 6 2.1873 -1.4345 -3.5175 21 6 3.3287 -2.2101 -3.2847 22 6 3.9429 -2.8385 -4.3493 23 7 3.4700 -2.7167 -5.5741 24 6 2.3956 -1.9938 -5.8411 25 7 1.9362 -1.8987 -7.1585 26 6 2.4929 -2.4947 -8.2616 27 6 1.7375 -2.1415 -9.3183 28 7 0.7459 -1.3515 -8.8798 29 6 0.8502 -1.2029 -7.5876 30 6 1.7142 -1.3329 -4.8269 31 1 -0.3634 0.4778 0.9098 32 1 -0.3633 0.5491 -0.8687 33 1 -0.3635 -1.0268 -0.0411 34 1 1.4510 -1.6480 1.4410 35 1 2.1397 -0.1268 2.1005 36 1 3.2775 -2.9920 1.8551 37 1 5.0982 -5.4675 3.1528 38 1 4.1064 -1.1282 -1.3425 39 1 3.1040 -2.5450 -0.9284 40 1 3.7238 -2.3156 -2.2851 41 1 4.8243 -3.4381 -4.1766 42 1 3.3690 -3.1260 -8.2787 43 1 1.9015 -2.4422 -10.3425 44 1 0.1866 -0.6224 -6.9640 45 1 0.8342 -0.7472 -5.0484 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989808916.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:49 Heat of formation + Delta-G solvation = 103.304452 kcal Electronic energy + Delta-G solvation = -29058.601559 eV Core-core repulsion = 25078.461583 eV Total energy + Delta-G solvation = -3980.139976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.45204 -41.97544 -40.62184 -38.80788 -35.98504 -35.57291 -34.32597 -33.25415 -32.62006 -31.12840 -30.39305 -30.10164 -27.21279 -26.23804 -25.59472 -25.20356 -23.41969 -22.35224 -22.05636 -21.70319 -20.85925 -19.53646 -19.13689 -18.17346 -17.57221 -17.38736 -16.94676 -16.82608 -16.56183 -16.17809 -15.85501 -15.47831 -15.36892 -15.04231 -14.96356 -14.91014 -14.74970 -14.49615 -14.36260 -14.24392 -13.71123 -13.30994 -13.18493 -12.99002 -12.87836 -12.79036 -12.25422 -12.11972 -11.99199 -11.94710 -11.68791 -11.57481 -11.31178 -11.20625 -11.17082 -11.00838 -10.65425 -9.97631 -9.74450 -9.57260 -9.03637 -7.91349 -5.21279 -0.66917 -0.43224 1.02383 1.24140 1.53912 1.55478 1.62630 1.70897 1.75891 2.01362 2.58803 2.60125 2.97355 3.17173 3.39254 3.42710 3.58252 3.65082 3.73753 3.78168 3.82780 3.87706 4.14116 4.19532 4.25165 4.30710 4.41096 4.47489 4.52286 4.53533 4.60512 4.67722 4.71937 4.78120 4.84551 5.00890 5.10301 5.12692 5.20511 5.25019 5.33654 5.49879 5.60074 5.61497 5.97084 6.28542 6.34735 6.50813 6.86415 6.90056 7.37747 8.08967 8.31791 9.31373 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012043 B = 0.002936 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.350296 B = 9533.286990 C =11599.979291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.137 3.863 3 H 0.096 0.904 4 C -0.127 4.127 5 C 0.164 3.836 6 H 0.077 0.923 7 N -0.724 5.724 8 C -0.238 4.238 9 H 0.086 0.914 10 C -0.068 4.068 11 N -0.967 5.967 12 Si 0.964 3.036 13 H -0.293 1.293 14 H -0.304 1.304 15 H -0.262 1.262 16 C 0.069 3.931 17 N -0.596 5.596 18 C 0.570 3.430 19 O -0.555 6.555 20 C -0.065 4.065 21 C -0.176 4.176 22 C 0.136 3.864 23 N -0.495 5.495 24 C 0.328 3.672 25 N -0.415 5.415 26 C -0.035 4.035 27 C -0.039 4.039 28 N -0.507 5.507 29 C 0.190 3.810 30 C -0.126 4.126 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.040 0.960 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.376 0.624 37 H 0.249 0.751 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.187 0.813 41 H 0.203 0.797 42 H 0.195 0.805 43 H 0.199 0.801 44 H 0.235 0.765 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.242 8.102 -14.010 16.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.035 3.965 3 H 0.114 0.886 4 C -0.166 4.166 5 C 0.054 3.946 6 H 0.095 0.905 7 N -0.363 5.363 8 C -0.369 4.369 9 H 0.104 0.896 10 C -0.261 4.261 11 N -0.618 5.618 12 Si 0.794 3.206 13 H -0.221 1.221 14 H -0.231 1.231 15 H -0.187 1.187 16 C -0.056 4.056 17 N -0.329 5.329 18 C 0.359 3.641 19 O -0.434 6.434 20 C -0.076 4.076 21 C -0.195 4.195 22 C -0.022 4.022 23 N -0.208 5.208 24 C 0.101 3.899 25 N -0.098 5.098 26 C -0.164 4.164 27 C -0.183 4.183 28 N -0.225 5.225 29 C -0.091 4.091 30 C -0.149 4.149 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.208 0.792 37 H 0.058 0.942 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.204 0.796 41 H 0.220 0.780 42 H 0.212 0.788 43 H 0.216 0.784 44 H 0.251 0.749 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.783 8.330 -15.330 18.090 hybrid contribution 0.916 -0.930 1.508 1.995 sum -3.867 7.400 -13.821 16.148 Atomic orbital electron populations 1.22065 0.93579 1.01966 1.03424 1.22141 0.95334 0.95853 0.83136 0.88624 1.23089 0.95798 1.00454 0.97264 1.21420 0.94836 0.89492 0.88852 0.90514 1.42536 1.05082 1.25122 1.63520 1.19640 0.85231 1.04541 1.27532 0.89570 1.25470 1.00988 0.98330 1.01332 1.69800 1.34170 1.15898 1.41891 0.85282 0.80960 0.76234 0.78119 1.22104 1.23077 1.18691 1.23579 0.86255 0.96176 0.99612 1.48564 1.28205 1.47368 1.08730 1.17849 0.84224 0.80325 0.81698 1.90711 1.22460 1.46959 1.83320 1.20156 0.96106 0.98080 0.93269 1.24041 0.94869 0.95782 1.04851 1.23151 0.98942 0.95404 0.84667 1.66907 1.11269 1.16895 1.25705 1.18087 0.92552 0.95722 0.83582 1.43229 1.23395 1.38369 1.04773 1.23258 1.03603 1.04390 0.85124 1.22853 0.93934 1.00854 1.00615 1.70358 1.24572 1.18735 1.08798 1.25914 0.91005 0.99947 0.92219 1.21624 1.01687 1.00876 0.90665 0.89943 0.91252 0.94032 0.91457 0.88217 0.79178 0.94185 0.89389 0.90724 0.79606 0.78046 0.78800 0.78391 0.74928 0.82023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.51 71.98 0.61 -2.94 16 2 C 0.14 3.21 3.80 45.41 0.17 3.38 16 3 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 4 C -0.13 -3.23 6.11 31.99 0.20 -3.04 16 5 C 0.16 4.97 3.59 46.18 0.17 5.13 16 6 H 0.08 2.24 8.12 -2.39 -0.02 2.22 16 7 N -0.72 -30.03 5.17 -317.34 -1.64 -31.67 16 8 C -0.24 -11.12 9.98 84.03 0.84 -10.29 16 9 H 0.09 3.75 7.83 -2.91 -0.02 3.73 16 10 C -0.07 -3.49 5.50 84.86 0.47 -3.03 16 11 N -0.97 -54.09 13.06 21.65 0.28 -53.80 16 12 Si 0.96 41.49 29.55 68.60 2.03 43.51 16 13 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 14 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 15 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 16 C 0.07 1.81 4.63 86.73 0.40 2.22 16 17 N -0.60 -15.29 3.25 -791.55 -2.57 -17.86 16 18 C 0.57 15.56 7.67 86.88 0.67 16.22 16 19 O -0.55 -17.18 14.09 -3.75 -0.05 -17.23 16 20 C -0.06 -1.56 5.90 -19.90 -0.12 -1.68 16 21 C -0.18 -3.80 8.69 22.64 0.20 -3.60 16 22 C 0.14 2.70 11.17 84.64 0.95 3.65 16 23 N -0.50 -11.30 9.86 -192.95 -1.90 -13.21 16 24 C 0.33 7.58 7.50 132.77 1.00 8.58 16 25 N -0.42 -9.27 2.98 -355.91 -1.06 -10.33 16 26 C -0.03 -0.71 11.17 83.03 0.93 0.22 16 27 C -0.04 -0.78 11.85 83.51 0.99 0.21 16 28 N -0.51 -12.18 11.24 -199.68 -2.25 -14.43 16 29 C 0.19 4.03 11.90 179.98 2.14 6.17 16 30 C -0.13 -2.84 9.07 22.76 0.21 -2.63 16 31 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.07 1.82 6.11 -2.39 -0.01 1.80 16 33 H 0.04 1.07 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.90 7.92 -2.38 -0.02 1.88 16 35 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.38 17.43 7.71 -92.71 -0.72 16.71 16 37 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 38 H 0.09 2.05 6.76 -2.39 -0.02 2.03 16 39 H 0.07 2.19 6.63 -2.38 -0.02 2.18 16 40 H 0.19 4.05 2.93 -3.36 -0.01 4.04 16 41 H 0.20 2.82 8.06 -2.91 -0.02 2.80 16 42 H 0.20 3.29 8.06 -2.91 -0.02 3.26 16 43 H 0.20 2.80 8.06 -2.91 -0.02 2.78 16 44 H 0.23 3.45 7.04 -2.91 -0.02 3.43 16 45 H 0.16 3.25 6.45 -2.91 -0.02 3.23 16 Total: -1.00 -64.19 370.12 2.97 -61.22 By element: Atomic # 1 Polarization: 34.91 SS G_CDS: 0.33 Total: 35.24 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 9.81 Total: 18.56 kcal Atomic # 7 Polarization: -132.16 SS G_CDS: -9.14 Total: -141.30 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.05 Total: -17.23 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Total: -64.19 2.97 -61.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989808916.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.526 kcal (2) G-P(sol) polarization free energy of solvation -64.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds