Wall clock time and date at job start Sat Apr 11 2020 06:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.99317 * 2 1 4 4 C 1.54322 * 109.88308 * 121.09196 * 2 1 3 5 5 C 1.55445 * 102.96855 * 141.61293 * 4 2 1 6 6 H 1.08995 * 111.11763 * 206.46841 * 5 4 2 7 7 N 1.46505 * 111.01146 * 82.52463 * 5 4 2 8 8 C 1.36936 * 119.99456 * 161.50451 * 7 5 4 9 9 H 1.08003 * 120.00707 * 0.02562 * 8 7 5 10 10 C 1.38812 * 119.99919 * 179.97438 * 8 7 5 11 11 N 1.31616 * 120.00551 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99771 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47351 * 90.00199 * 12 10 8 14 14 H 1.48500 * 109.47258 * 209.99861 * 12 10 8 15 15 H 1.48501 * 109.47405 * 329.99892 * 12 10 8 16 16 C 1.54912 * 101.45134 * 324.51945 * 5 4 2 17 17 N 1.47018 * 109.88548 * 238.90592 * 2 1 3 18 18 C 1.34774 * 125.64892 * 61.65845 * 17 2 1 19 19 O 1.21556 * 119.99902 * 173.73454 * 18 17 2 20 20 C 1.47851 * 120.00372 * 353.73195 * 18 17 2 21 21 C 1.39618 * 120.11478 * 16.86477 * 20 18 17 22 22 C 1.37966 * 119.99134 * 179.97438 * 21 20 18 23 23 C 1.38268 * 120.21646 * 0.02562 * 22 21 20 24 24 C 1.38914 * 120.22623 * 359.97438 * 23 22 21 25 25 N 1.40265 * 119.99238 * 179.97438 * 24 23 22 26 26 C 1.36112 * 125.94774 * 4.71553 * 25 24 23 27 27 C 1.35364 * 106.05224 * 179.84686 * 26 25 24 28 28 N 1.33767 * 106.53809 * 0.40824 * 27 26 25 29 29 N 1.28604 * 109.06237 * 359.73900 * 28 27 26 30 30 C 1.38586 * 120.00793 * 359.74223 * 24 23 22 31 31 H 1.09000 * 109.46991 * 197.20893 * 1 2 3 32 32 H 1.08992 * 109.47796 * 317.21127 * 1 2 3 33 33 H 1.09005 * 109.47303 * 77.21508 * 1 2 3 34 34 H 1.08997 * 110.71845 * 259.97687 * 4 2 1 35 35 H 1.08995 * 110.71622 * 23.25346 * 4 2 1 36 36 H 0.96990 * 120.00043 * 341.50090 * 7 5 4 37 37 H 0.96997 * 120.00374 * 180.02562 * 11 10 8 38 38 H 1.09001 * 110.36384 * 278.11245 * 16 5 4 39 39 H 1.08999 * 110.36631 * 155.89724 * 16 5 4 40 40 H 1.08002 * 120.00163 * 359.95718 * 21 20 18 41 41 H 1.08001 * 119.89719 * 179.97438 * 22 21 20 42 42 H 1.08003 * 119.89148 * 179.97438 * 23 22 21 43 43 H 1.08007 * 126.96855 * 359.97438 * 26 25 24 44 44 H 1.08006 * 126.72940 * 180.13932 * 27 26 25 45 45 H 1.07998 * 120.10352 * 180.26907 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 1.2427 5 6 3.2900 -1.5158 0.6921 6 1 3.4886 -2.4133 1.2779 7 7 4.4698 -0.6483 0.6481 8 6 5.7211 -1.1980 0.5634 9 1 5.8383 -2.2711 0.5286 10 6 6.8389 -0.3761 0.5212 11 7 8.0416 -0.9044 0.4392 12 14 6.6362 1.4799 0.5807 13 1 6.6618 1.9357 1.9938 14 1 7.7462 2.1233 -0.1671 15 1 5.3394 1.8564 -0.0374 16 6 2.8146 -1.8793 -0.7367 17 7 2.0301 -0.7140 -1.1839 18 6 1.8083 -0.3614 -2.4656 19 8 2.3649 -0.9597 -3.3655 20 6 0.8881 0.7531 -2.7772 21 6 0.5240 1.6604 -1.7805 22 6 -0.3345 2.6998 -2.0743 23 6 -0.8373 2.8466 -3.3539 24 6 -0.4810 1.9490 -4.3525 25 7 -0.9943 2.1022 -5.6488 26 6 -1.7733 3.1304 -6.0834 27 6 -2.0329 2.8779 -7.3877 28 7 -1.4205 1.7255 -7.6817 29 7 -0.8153 1.2920 -6.6330 30 6 0.3853 0.9050 -4.0692 31 1 -0.3633 -0.9817 0.3040 32 1 -0.3634 0.7541 0.6980 33 1 -0.3634 0.2274 -1.0022 34 1 2.3528 -0.0458 2.0200 35 1 1.3051 -1.4458 1.6182 36 1 4.3645 0.3154 0.6790 37 1 8.8227 -0.3300 0.4101 38 1 2.1887 -2.7714 -0.7127 39 1 3.6706 -2.0349 -1.3933 40 1 0.9141 1.5486 -0.7797 41 1 -0.6155 3.4005 -1.3020 42 1 -1.5093 3.6619 -3.5780 43 1 -2.1133 3.9770 -5.5053 44 1 -2.6227 3.4854 -8.0582 45 1 0.6668 0.2089 -4.8454 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989861481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:08 Heat of formation + Delta-G solvation = 163.647455 kcal Electronic energy + Delta-G solvation = -29520.081886 eV Core-core repulsion = 25542.558579 eV Total energy + Delta-G solvation = -3977.523307 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.74309 -41.05580 -39.06099 -37.62329 -35.38622 -34.27714 -32.26880 -31.83590 -31.53800 -31.06929 -30.34477 -28.81365 -26.15833 -24.69899 -24.60287 -23.47075 -22.87806 -21.79828 -21.62199 -20.34889 -19.76374 -18.62395 -17.79453 -17.18369 -16.80731 -16.36245 -16.21600 -15.56988 -15.50815 -14.82565 -14.77369 -14.55993 -14.39048 -14.15963 -13.99261 -13.69457 -13.46600 -13.06655 -12.69798 -12.65496 -12.45259 -12.16900 -12.09191 -11.99127 -11.70677 -11.59872 -11.31848 -11.18256 -11.04167 -10.90612 -10.72947 -10.51961 -10.19284 -9.87636 -9.82334 -9.67539 -9.51343 -9.12185 -8.88339 -8.46546 -7.38818 -5.85073 -3.22698 0.13182 0.56269 1.55471 1.86231 2.22139 2.70656 3.01695 3.30009 3.30290 3.39215 3.46937 3.93954 4.06362 4.25699 4.42577 4.47156 4.50711 4.54982 4.59530 4.73573 4.76760 4.81860 4.84427 5.06794 5.12621 5.15543 5.24467 5.35014 5.42905 5.46467 5.55801 5.64439 5.66317 5.78946 5.83863 5.85072 5.87815 5.99082 6.04056 6.06041 6.14359 6.32990 6.45110 6.52527 6.64038 7.64148 7.88352 8.11793 8.23868 8.33213 9.09497 9.81637 9.98865 11.32757 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015439 B = 0.002890 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.194672 B = 9686.690049 C =10079.818923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.116 3.884 3 H 0.083 0.917 4 C -0.139 4.139 5 C 0.174 3.826 6 H 0.083 0.917 7 N -0.736 5.736 8 C -0.250 4.250 9 H 0.093 0.907 10 C 0.010 3.990 11 N -0.928 5.928 12 Si 0.883 3.117 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.279 1.279 16 C 0.078 3.922 17 N -0.593 5.593 18 C 0.569 3.431 19 O -0.527 6.527 20 C -0.110 4.110 21 C -0.094 4.094 22 C -0.116 4.116 23 C -0.093 4.093 24 C 0.101 3.899 25 N -0.238 5.238 26 C -0.052 4.052 27 C -0.045 4.045 28 N -0.264 5.264 29 N -0.074 5.074 30 C -0.041 4.041 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.361 0.639 37 H 0.261 0.739 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.171 0.829 41 H 0.144 0.856 42 H 0.137 0.863 43 H 0.194 0.806 44 H 0.195 0.805 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.347 10.744 -2.177 27.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.012 3.988 3 H 0.100 0.900 4 C -0.177 4.177 5 C 0.062 3.938 6 H 0.101 0.899 7 N -0.377 5.377 8 C -0.380 4.380 9 H 0.111 0.889 10 C -0.187 4.187 11 N -0.575 5.575 12 Si 0.714 3.286 13 H -0.210 1.210 14 H -0.216 1.216 15 H -0.205 1.205 16 C -0.047 4.047 17 N -0.326 5.326 18 C 0.357 3.643 19 O -0.405 6.405 20 C -0.114 4.114 21 C -0.112 4.112 22 C -0.135 4.135 23 C -0.114 4.114 24 C 0.010 3.990 25 N -0.026 5.026 26 C -0.200 4.200 27 C -0.201 4.201 28 N -0.130 5.130 29 N -0.052 5.052 30 C -0.062 4.062 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.194 0.806 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.108 0.892 40 H 0.187 0.813 41 H 0.162 0.838 42 H 0.155 0.845 43 H 0.211 0.789 44 H 0.212 0.788 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -24.173 8.953 -3.277 25.985 hybrid contribution -0.570 2.598 0.274 2.674 sum -24.742 11.551 -3.004 27.471 Atomic orbital electron populations 1.22900 0.94928 1.03276 1.03102 1.21972 0.93805 0.96424 0.86573 0.89965 1.23161 0.98671 1.00146 0.95752 1.21388 0.85895 0.94466 0.92036 0.89919 1.42661 1.02088 1.03792 1.89170 1.19038 0.81327 0.94001 1.43626 0.88902 1.24671 0.95130 0.97315 1.01548 1.69687 0.97116 1.34181 1.56519 0.86578 0.77045 0.87390 0.77627 1.20965 1.21648 1.20534 1.23342 0.95171 0.86226 0.99958 1.48276 1.51523 1.28896 1.03871 1.17639 0.81643 0.83194 0.81862 1.90823 1.49792 1.54769 1.45067 1.19887 1.00105 0.97840 0.93558 1.22947 0.94671 0.92028 1.01540 1.20991 0.98163 0.98514 0.95808 1.21055 1.00094 0.97983 0.92282 1.17439 1.00948 0.99832 0.80761 1.44757 1.32720 1.15999 1.09085 1.23829 1.01585 0.96975 0.97597 1.23675 1.04714 0.97025 0.94686 1.75159 1.09289 1.10500 1.18091 1.78484 1.19768 1.16311 0.90650 1.21027 0.92564 0.95648 0.96917 0.91503 0.90982 0.90724 0.89553 0.89815 0.80601 0.92905 0.92168 0.89208 0.81259 0.83801 0.84488 0.78922 0.78785 0.82794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 7.79 37.16 0.29 -1.23 16 2 C 0.12 1.33 2.73 -66.96 -0.18 1.14 16 3 H 0.08 0.92 6.18 -51.93 -0.32 0.60 16 4 C -0.14 -1.62 6.05 -24.74 -0.15 -1.77 16 5 C 0.17 2.88 3.71 -65.62 -0.24 2.64 16 6 H 0.08 1.36 8.13 -51.93 -0.42 0.93 16 7 N -0.74 -15.92 5.07 -51.20 -0.26 -16.18 16 8 C -0.25 -6.72 10.47 -15.06 -0.16 -6.88 16 9 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 10 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 11 N -0.93 -28.69 13.97 55.49 0.78 -27.91 16 12 Si 0.88 21.52 27.74 -169.99 -4.71 16.80 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 15 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 16 C 0.08 1.32 6.62 -2.53 -0.02 1.30 16 17 N -0.59 -9.15 3.06 -164.12 -0.50 -9.66 16 18 C 0.57 9.68 7.61 -12.33 -0.09 9.58 16 19 O -0.53 -11.18 16.69 5.32 0.09 -11.10 16 20 C -0.11 -1.46 5.06 -104.99 -0.53 -1.99 16 21 C -0.09 -0.91 6.23 -39.17 -0.24 -1.15 16 22 C -0.12 -0.81 10.02 -39.67 -0.40 -1.21 16 23 C -0.09 -0.69 9.45 -39.32 -0.37 -1.06 16 24 C 0.10 1.10 6.67 -83.62 -0.56 0.54 16 25 N -0.24 -2.73 3.56 -10.50 -0.04 -2.77 16 26 C -0.05 -0.41 10.91 -16.68 -0.18 -0.59 16 27 C -0.05 -0.40 12.05 -17.73 -0.21 -0.62 16 28 N -0.26 -3.54 12.39 30.24 0.37 -3.17 16 29 N -0.07 -1.06 12.42 60.35 0.75 -0.31 16 30 C -0.04 -0.54 9.16 -39.00 -0.36 -0.90 16 31 H 0.07 0.55 7.71 -51.93 -0.40 0.15 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.67 4.26 -51.93 -0.22 0.45 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.08 0.78 7.58 -51.93 -0.39 0.38 16 36 H 0.36 7.70 5.68 -40.82 -0.23 7.47 16 37 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 1.89 7.98 -51.93 -0.41 1.47 16 40 H 0.17 1.49 2.61 -52.49 -0.14 1.35 16 41 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 42 H 0.14 0.54 6.77 -52.48 -0.36 0.19 16 43 H 0.19 0.63 7.12 -52.48 -0.37 0.26 16 44 H 0.20 0.94 8.06 -52.48 -0.42 0.52 16 45 H 0.15 2.35 7.38 -52.49 -0.39 1.96 16 LS Contribution 363.99 15.07 5.49 5.49 Total: -1.00 -36.70 363.99 -6.91 -43.61 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -5.36 Total: 7.20 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -3.51 Total: -2.01 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: 1.10 Total: -59.99 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.71 Total: 16.80 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.70 -6.91 -43.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989861481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.254 kcal (2) G-P(sol) polarization free energy of solvation -36.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds