Wall clock time and date at job start Sat Apr 11 2020 06:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.99317 * 2 1 4 4 C 1.54322 * 109.88308 * 121.09196 * 2 1 3 5 5 C 1.55445 * 102.96855 * 141.61293 * 4 2 1 6 6 H 1.08995 * 111.11763 * 206.46841 * 5 4 2 7 7 N 1.46505 * 111.01146 * 82.52463 * 5 4 2 8 8 C 1.36936 * 119.99456 * 161.50451 * 7 5 4 9 9 H 1.08003 * 120.00707 * 0.02562 * 8 7 5 10 10 C 1.38812 * 119.99919 * 179.97438 * 8 7 5 11 11 N 1.31616 * 120.00551 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99771 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47351 * 90.00199 * 12 10 8 14 14 H 1.48500 * 109.47258 * 209.99861 * 12 10 8 15 15 H 1.48501 * 109.47405 * 329.99892 * 12 10 8 16 16 C 1.54912 * 101.45134 * 324.51945 * 5 4 2 17 17 N 1.47018 * 109.88548 * 238.90592 * 2 1 3 18 18 C 1.34774 * 125.64892 * 61.65845 * 17 2 1 19 19 O 1.21556 * 119.99902 * 173.73454 * 18 17 2 20 20 C 1.47851 * 120.00372 * 353.73195 * 18 17 2 21 21 C 1.39618 * 120.11478 * 16.86477 * 20 18 17 22 22 C 1.37966 * 119.99134 * 179.97438 * 21 20 18 23 23 C 1.38268 * 120.21646 * 0.02562 * 22 21 20 24 24 C 1.38914 * 120.22623 * 359.97438 * 23 22 21 25 25 N 1.40265 * 119.99238 * 179.97438 * 24 23 22 26 26 C 1.36112 * 125.94774 * 4.71553 * 25 24 23 27 27 C 1.35364 * 106.05224 * 179.84686 * 26 25 24 28 28 N 1.33767 * 106.53809 * 0.40824 * 27 26 25 29 29 N 1.28604 * 109.06237 * 359.73900 * 28 27 26 30 30 C 1.38586 * 120.00793 * 359.74223 * 24 23 22 31 31 H 1.09000 * 109.46991 * 197.20893 * 1 2 3 32 32 H 1.08992 * 109.47796 * 317.21127 * 1 2 3 33 33 H 1.09005 * 109.47303 * 77.21508 * 1 2 3 34 34 H 1.08997 * 110.71845 * 259.97687 * 4 2 1 35 35 H 1.08995 * 110.71622 * 23.25346 * 4 2 1 36 36 H 0.96990 * 120.00043 * 341.50090 * 7 5 4 37 37 H 0.96997 * 120.00374 * 180.02562 * 11 10 8 38 38 H 1.09001 * 110.36384 * 278.11245 * 16 5 4 39 39 H 1.08999 * 110.36631 * 155.89724 * 16 5 4 40 40 H 1.08002 * 120.00163 * 359.95718 * 21 20 18 41 41 H 1.08001 * 119.89719 * 179.97438 * 22 21 20 42 42 H 1.08003 * 119.89148 * 179.97438 * 23 22 21 43 43 H 1.08007 * 126.96855 * 359.97438 * 26 25 24 44 44 H 1.08006 * 126.72940 * 180.13932 * 27 26 25 45 45 H 1.07998 * 120.10352 * 180.26907 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 1.2427 5 6 3.2900 -1.5158 0.6921 6 1 3.4886 -2.4133 1.2779 7 7 4.4698 -0.6483 0.6481 8 6 5.7211 -1.1980 0.5634 9 1 5.8383 -2.2711 0.5286 10 6 6.8389 -0.3761 0.5212 11 7 8.0416 -0.9044 0.4392 12 14 6.6362 1.4799 0.5807 13 1 6.6618 1.9357 1.9938 14 1 7.7462 2.1233 -0.1671 15 1 5.3394 1.8564 -0.0374 16 6 2.8146 -1.8793 -0.7367 17 7 2.0301 -0.7140 -1.1839 18 6 1.8083 -0.3614 -2.4656 19 8 2.3649 -0.9597 -3.3655 20 6 0.8881 0.7531 -2.7772 21 6 0.5240 1.6604 -1.7805 22 6 -0.3345 2.6998 -2.0743 23 6 -0.8373 2.8466 -3.3539 24 6 -0.4810 1.9490 -4.3525 25 7 -0.9943 2.1022 -5.6488 26 6 -1.7733 3.1304 -6.0834 27 6 -2.0329 2.8779 -7.3877 28 7 -1.4205 1.7255 -7.6817 29 7 -0.8153 1.2920 -6.6330 30 6 0.3853 0.9050 -4.0692 31 1 -0.3633 -0.9817 0.3040 32 1 -0.3634 0.7541 0.6980 33 1 -0.3634 0.2274 -1.0022 34 1 2.3528 -0.0458 2.0200 35 1 1.3051 -1.4458 1.6182 36 1 4.3645 0.3154 0.6790 37 1 8.8227 -0.3300 0.4101 38 1 2.1887 -2.7714 -0.7127 39 1 3.6706 -2.0349 -1.3933 40 1 0.9141 1.5486 -0.7797 41 1 -0.6155 3.4005 -1.3020 42 1 -1.5093 3.6619 -3.5780 43 1 -2.1133 3.9770 -5.5053 44 1 -2.6227 3.4854 -8.0582 45 1 0.6668 0.2089 -4.8454 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989861481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:07 Heat of formation + Delta-G solvation = 135.885449 kcal Electronic energy + Delta-G solvation = -29521.285737 eV Core-core repulsion = 25542.558579 eV Total energy + Delta-G solvation = -3978.727158 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.49594 -42.08085 -39.98975 -38.93447 -36.53023 -35.61210 -33.74247 -32.80504 -32.64342 -31.94711 -31.49034 -30.01558 -27.20286 -25.85309 -25.36603 -25.03515 -23.86410 -22.60717 -22.45804 -21.62089 -20.78574 -19.86059 -19.46925 -18.01797 -17.58997 -17.50523 -17.32016 -16.60186 -16.43219 -16.26477 -15.84951 -15.67215 -15.44832 -15.14973 -14.94085 -14.72726 -14.68191 -14.53029 -13.92673 -13.73314 -13.58794 -13.34216 -13.11599 -12.93821 -12.74770 -12.70164 -12.45407 -12.39668 -12.11712 -12.08894 -12.03099 -11.84415 -11.66736 -11.48748 -11.18246 -11.05431 -10.52844 -10.30820 -9.81008 -9.62618 -9.28409 -8.04614 -5.38805 -0.58290 -0.26262 0.86318 1.17544 1.31850 1.39409 1.45202 1.50486 1.67667 1.87233 2.46152 2.58256 3.15673 3.26270 3.39454 3.49617 3.57033 3.63433 3.68807 3.74133 3.94078 3.96390 4.04345 4.16557 4.21997 4.26065 4.28677 4.40699 4.57096 4.61842 4.68075 4.72075 4.82438 4.93843 4.98872 5.01417 5.07805 5.12078 5.14915 5.21615 5.22465 5.33553 5.39230 5.46432 5.75620 5.76227 6.19135 6.45056 6.98709 7.05767 7.34876 7.80273 7.98419 9.16963 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015439 B = 0.002890 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.194672 B = 9686.690049 C =10079.818923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.106 3.894 3 H 0.096 0.904 4 C -0.120 4.120 5 C 0.162 3.838 6 H 0.082 0.918 7 N -0.737 5.737 8 C -0.230 4.230 9 H 0.056 0.944 10 C -0.068 4.068 11 N -0.985 5.985 12 Si 0.956 3.044 13 H -0.264 1.264 14 H -0.306 1.306 15 H -0.254 1.254 16 C 0.081 3.919 17 N -0.594 5.594 18 C 0.555 3.445 19 O -0.596 6.596 20 C -0.132 4.132 21 C -0.085 4.085 22 C -0.095 4.095 23 C -0.068 4.068 24 C 0.087 3.913 25 N -0.245 5.245 26 C -0.030 4.030 27 C -0.054 4.054 28 N -0.305 5.305 29 N -0.139 5.139 30 C -0.068 4.068 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.117 0.883 36 H 0.367 0.633 37 H 0.256 0.744 38 H 0.080 0.920 39 H 0.032 0.968 40 H 0.184 0.816 41 H 0.199 0.801 42 H 0.188 0.812 43 H 0.251 0.749 44 H 0.232 0.768 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.435 16.124 0.803 34.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.005 3.995 3 H 0.113 0.887 4 C -0.158 4.158 5 C 0.052 3.948 6 H 0.100 0.900 7 N -0.379 5.379 8 C -0.361 4.361 9 H 0.074 0.926 10 C -0.259 4.259 11 N -0.636 5.636 12 Si 0.783 3.217 13 H -0.190 1.190 14 H -0.233 1.233 15 H -0.179 1.179 16 C -0.045 4.045 17 N -0.325 5.325 18 C 0.346 3.654 19 O -0.478 6.478 20 C -0.136 4.136 21 C -0.103 4.103 22 C -0.112 4.112 23 C -0.088 4.088 24 C -0.003 4.003 25 N -0.032 5.032 26 C -0.178 4.178 27 C -0.211 4.211 28 N -0.170 5.170 29 N -0.117 5.117 30 C -0.089 4.089 31 H 0.088 0.912 32 H 0.133 0.867 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.135 0.865 36 H 0.200 0.800 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.051 0.949 40 H 0.200 0.800 41 H 0.216 0.784 42 H 0.205 0.795 43 H 0.267 0.733 44 H 0.248 0.752 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -29.347 14.317 -0.251 32.654 hybrid contribution 0.905 0.860 -0.683 1.423 sum -28.442 15.177 -0.934 32.252 Atomic orbital electron populations 1.22852 0.91600 1.05010 1.03891 1.22393 0.96447 0.96375 0.84295 0.88675 1.23162 0.96178 1.00474 0.96029 1.21657 0.86419 0.94893 0.91841 0.89996 1.42604 1.01644 1.04564 1.89106 1.19014 0.83736 0.92560 1.40823 0.92595 1.25569 0.94729 1.02984 1.02660 1.69895 0.98153 1.36025 1.59497 0.85399 0.77382 0.80508 0.78395 1.18968 1.23310 1.17856 1.23116 0.94105 0.88316 0.98957 1.48426 1.50767 1.28488 1.04819 1.18460 0.81608 0.83745 0.81581 1.90771 1.52590 1.57396 1.47079 1.19553 1.01134 0.98188 0.94713 1.23109 0.94776 0.91626 1.00807 1.21594 0.95554 0.97433 0.96664 1.21666 0.98895 0.97226 0.91050 1.17700 1.00972 1.00099 0.81555 1.44953 1.32940 1.16497 1.08842 1.24772 0.98870 0.96618 0.97506 1.24460 1.04446 0.96000 0.96165 1.75085 1.10388 1.12808 1.18690 1.78492 1.22528 1.18692 0.91948 1.20779 0.94947 0.96849 0.96325 0.91246 0.86724 0.91369 0.87739 0.86464 0.79973 0.93480 0.90240 0.94932 0.79957 0.78441 0.79490 0.73295 0.75165 0.87184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 7.79 71.98 0.56 -1.42 16 2 C 0.11 2.05 2.73 45.34 0.12 2.18 16 3 H 0.10 1.64 6.18 -2.39 -0.01 1.62 16 4 C -0.12 -2.33 6.05 31.88 0.19 -2.13 16 5 C 0.16 5.28 3.71 46.49 0.17 5.46 16 6 H 0.08 2.69 8.13 -2.39 -0.02 2.67 16 7 N -0.74 -31.80 5.07 -315.89 -1.60 -33.40 16 8 C -0.23 -12.87 10.47 84.03 0.88 -11.99 16 9 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 10 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 11 N -0.99 -63.98 13.97 21.65 0.30 -63.68 16 12 Si 0.96 44.79 27.74 68.60 1.90 46.69 16 13 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 14 H -0.31 -15.04 7.11 99.48 0.71 -14.33 16 15 H -0.25 -10.64 6.52 99.48 0.65 -9.99 16 16 C 0.08 2.86 6.62 86.86 0.58 3.44 16 17 N -0.59 -18.42 3.06 -791.43 -2.43 -20.84 16 18 C 0.56 20.11 7.61 86.79 0.66 20.77 16 19 O -0.60 -28.40 16.69 -3.89 -0.06 -28.47 16 20 C -0.13 -3.49 5.06 -20.10 -0.10 -3.59 16 21 C -0.09 -1.28 6.23 22.54 0.14 -1.14 16 22 C -0.09 -0.64 10.02 22.21 0.22 -0.42 16 23 C -0.07 -0.58 9.45 22.44 0.21 -0.37 16 24 C 0.09 1.74 6.67 38.04 0.25 1.99 16 25 N -0.24 -5.33 3.56 -187.14 -0.67 -6.00 16 26 C -0.03 -0.35 10.91 83.37 0.91 0.56 16 27 C -0.05 -0.85 12.05 83.73 1.01 0.16 16 28 N -0.30 -8.41 12.39 -58.25 -0.72 -9.13 16 29 N -0.14 -4.25 12.42 37.02 0.46 -3.79 16 30 C -0.07 -1.91 9.16 22.65 0.21 -1.70 16 31 H 0.07 0.79 7.71 -2.39 -0.02 0.77 16 32 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.07 0.93 4.26 -2.38 -0.01 0.92 16 34 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.12 1.56 7.58 -2.39 -0.02 1.54 16 36 H 0.37 14.91 5.68 -92.72 -0.53 14.38 16 37 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 38 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.03 1.51 7.98 -2.39 -0.02 1.49 16 40 H 0.18 2.18 2.61 -2.91 -0.01 2.18 16 41 H 0.20 -0.58 8.06 -2.91 -0.02 -0.60 16 42 H 0.19 -0.25 6.77 -2.91 -0.02 -0.27 16 43 H 0.25 -0.28 7.12 -2.91 -0.02 -0.30 16 44 H 0.23 1.45 8.06 -2.91 -0.02 1.43 16 45 H 0.11 3.97 7.38 -2.91 -0.02 3.95 16 Total: -1.00 -96.74 363.99 4.14 -92.60 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.47 Total: 17.80 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 6.49 Total: 8.23 kcal Atomic # 7 Polarization: -132.19 SS G_CDS: -4.65 Total: -136.85 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.06 Total: -28.47 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.90 Total: 46.69 kcal Total: -96.74 4.14 -92.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989861481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.485 kcal (2) G-P(sol) polarization free energy of solvation -96.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds