Wall clock time and date at job start Sat Apr 11 2020 06:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.99821 * 2 1 4 4 C 1.54333 * 109.99590 * 238.96223 * 2 1 3 5 5 C 1.55153 * 103.01893 * 218.66866 * 4 2 1 6 6 H 1.09001 * 111.00668 * 277.22996 * 5 4 2 7 7 N 1.46506 * 111.00305 * 153.38040 * 5 4 2 8 8 C 1.36941 * 119.99710 * 161.34565 * 7 5 4 9 9 H 1.07997 * 120.00303 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99497 * 179.97438 * 8 7 5 11 11 N 1.31618 * 119.99463 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 120.00255 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.46841 * 89.99732 * 12 10 8 14 14 H 1.48497 * 109.47436 * 209.99956 * 12 10 8 15 15 H 1.48494 * 109.47145 * 330.00232 * 12 10 8 16 16 C 1.54905 * 101.58802 * 35.30341 * 5 4 2 17 17 N 1.47024 * 109.87897 * 121.08951 * 2 1 3 18 18 C 1.34767 * 125.65145 * 298.39518 * 17 2 1 19 19 O 1.21551 * 120.00048 * 3.35530 * 18 17 2 20 20 C 1.47863 * 120.00019 * 183.34442 * 18 17 2 21 21 C 1.39617 * 120.11332 * 332.77974 * 20 18 17 22 22 C 1.37975 * 119.98312 * 179.72543 * 21 20 18 23 23 C 1.38266 * 120.21624 * 0.24442 * 22 21 20 24 24 C 1.38907 * 120.22952 * 0.02562 * 23 22 21 25 25 N 1.40271 * 119.99573 * 179.97438 * 24 23 22 26 26 C 1.36116 * 125.93799 * 4.72260 * 25 24 23 27 27 C 1.35379 * 106.04798 * 179.84153 * 26 25 24 28 28 N 1.33776 * 106.53172 * 0.40938 * 27 26 25 29 29 N 1.28603 * 109.06758 * 359.73098 * 28 27 26 30 30 C 1.38579 * 120.00800 * 359.97438 * 24 23 22 31 31 H 1.08994 * 109.47657 * 300.36432 * 1 2 3 32 32 H 1.09005 * 109.46675 * 60.35848 * 1 2 3 33 33 H 1.08993 * 109.47016 * 180.35693 * 1 2 3 34 34 H 1.08995 * 110.84907 * 100.19826 * 4 2 1 35 35 H 1.08994 * 110.66396 * 337.04590 * 4 2 1 36 36 H 0.96990 * 119.99843 * 341.34451 * 7 5 4 37 37 H 0.97007 * 119.99547 * 180.02562 * 11 10 8 38 38 H 1.08999 * 110.37514 * 204.15270 * 16 5 4 39 39 H 1.08997 * 110.36779 * 81.82334 * 16 5 4 40 40 H 1.07996 * 120.01097 * 359.97438 * 21 20 18 41 41 H 1.07996 * 119.89401 * 180.22943 * 22 21 20 42 42 H 1.07996 * 119.88707 * 180.02562 * 23 22 21 43 43 H 1.07994 * 126.97710 * 0.02562 * 26 25 24 44 44 H 1.07998 * 126.73195 * 180.17792 * 27 26 25 45 45 H 1.08005 * 120.10186 * 180.02562 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2426 5 6 3.2863 -1.5183 -0.6913 6 1 4.1670 -0.8768 -0.6576 7 7 3.5476 -2.7242 -1.4811 8 6 4.7736 -3.3312 -1.4188 9 1 5.5477 -2.9212 -0.7871 10 6 5.0209 -4.4742 -2.1668 11 7 6.1990 -5.0578 -2.1065 12 14 3.6818 -5.1837 -3.2588 13 1 3.7742 -4.5787 -4.6119 14 1 3.8546 -6.6550 -3.3616 15 1 2.3520 -4.8813 -2.6713 16 6 2.8099 -1.8825 0.7370 17 7 2.0299 -0.7140 1.1840 18 6 1.8073 -0.3619 2.4657 19 8 1.0916 0.5872 2.7197 20 6 2.4334 -1.1303 3.5629 21 6 2.7585 -2.4756 3.3793 22 6 3.3478 -3.1885 4.4030 23 6 3.6136 -2.5765 5.6140 24 6 3.2888 -1.2400 5.8084 25 7 3.5602 -0.6242 7.0391 26 6 4.2160 -1.1909 8.0886 27 6 4.2560 -0.2473 9.0585 28 7 3.6272 0.8276 8.5700 29 7 3.2276 0.5734 7.3743 30 6 2.6966 -0.5150 4.7865 31 1 -0.3634 0.5194 0.8866 32 1 -0.3633 0.5083 -0.8932 33 1 -0.3633 -1.0276 0.0064 34 1 2.3598 -0.0450 -2.0190 35 1 1.3068 -1.4405 -1.6224 36 1 2.8523 -3.0927 -2.0481 37 1 6.3720 -5.8563 -2.6295 38 1 3.6655 -2.0411 1.3935 39 1 2.1801 -2.7717 0.7116 40 1 2.5524 -2.9570 2.4348 41 1 3.6020 -4.2281 4.2581 42 1 4.0754 -3.1395 6.4116 43 1 4.6245 -2.1895 8.1366 44 1 4.7039 -0.3447 10.0364 45 1 2.4438 0.5243 4.9358 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989861482.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:13 Heat of formation + Delta-G solvation = 111.933666 kcal Electronic energy + Delta-G solvation = -29054.162215 eV Core-core repulsion = 25074.396430 eV Total energy + Delta-G solvation = -3979.765785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.49544 -41.78481 -40.08283 -38.77888 -36.12479 -35.84244 -33.58178 -33.33782 -32.57258 -31.75060 -30.82789 -30.52871 -27.05539 -25.98829 -25.42258 -25.17881 -23.70643 -22.53101 -22.28927 -21.89402 -20.70809 -19.72146 -19.33124 -18.02894 -17.61074 -17.54348 -17.20827 -16.77527 -16.52084 -16.13974 -15.79386 -15.59016 -15.24789 -15.12523 -14.88629 -14.86881 -14.53655 -14.37820 -14.15111 -13.88446 -13.65817 -13.23967 -13.10611 -12.96948 -12.93443 -12.87430 -12.52975 -12.30041 -12.16050 -12.09570 -12.03402 -11.86189 -11.77079 -11.55244 -11.14905 -10.92732 -10.52396 -10.31439 -9.81107 -9.77605 -9.31779 -7.97881 -5.33855 -0.60241 -0.25798 0.84549 1.13793 1.44780 1.47585 1.50445 1.54533 1.62367 1.81384 2.53111 2.54992 3.09361 3.31182 3.35423 3.53400 3.59954 3.67872 3.76563 3.80002 3.91227 3.98980 4.06638 4.17234 4.18969 4.23380 4.27332 4.40471 4.43690 4.55469 4.64395 4.68822 4.72386 4.80862 4.96272 4.99918 5.04334 5.06682 5.13847 5.21020 5.21457 5.31397 5.35273 5.43160 5.73586 5.81709 6.24678 6.35984 6.94668 7.10679 7.34122 7.83424 8.03277 9.22642 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013237 B = 0.002891 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.788022 B = 9684.229890 C =11313.672337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.135 3.865 3 H 0.075 0.925 4 C -0.126 4.126 5 C 0.167 3.833 6 H 0.062 0.938 7 N -0.735 5.735 8 C -0.231 4.231 9 H 0.062 0.938 10 C -0.056 4.056 11 N -0.980 5.980 12 Si 0.949 3.051 13 H -0.284 1.284 14 H -0.301 1.301 15 H -0.244 1.244 16 C 0.076 3.924 17 N -0.600 5.600 18 C 0.568 3.432 19 O -0.572 6.572 20 C -0.124 4.124 21 C -0.087 4.087 22 C -0.092 4.092 23 C -0.074 4.074 24 C 0.097 3.903 25 N -0.246 5.246 26 C -0.032 4.032 27 C -0.052 4.052 28 N -0.301 5.301 29 N -0.131 5.131 30 C -0.064 4.064 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.371 0.629 37 H 0.257 0.743 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.156 0.844 41 H 0.181 0.819 42 H 0.184 0.816 43 H 0.246 0.754 44 H 0.232 0.768 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.430 1.749 15.372 17.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.032 3.968 3 H 0.093 0.907 4 C -0.164 4.164 5 C 0.057 3.943 6 H 0.080 0.920 7 N -0.378 5.378 8 C -0.362 4.362 9 H 0.080 0.920 10 C -0.248 4.248 11 N -0.630 5.630 12 Si 0.776 3.224 13 H -0.210 1.210 14 H -0.229 1.229 15 H -0.168 1.168 16 C -0.049 4.049 17 N -0.331 5.331 18 C 0.358 3.642 19 O -0.453 6.453 20 C -0.127 4.127 21 C -0.105 4.105 22 C -0.110 4.110 23 C -0.095 4.095 24 C 0.006 3.994 25 N -0.034 5.034 26 C -0.180 4.180 27 C -0.208 4.208 28 N -0.166 5.166 29 N -0.109 5.109 30 C -0.086 4.086 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.205 0.795 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.174 0.826 41 H 0.198 0.802 42 H 0.202 0.798 43 H 0.262 0.738 44 H 0.249 0.751 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.293 3.599 15.209 17.693 hybrid contribution 0.124 -1.218 -0.480 1.315 sum -8.169 2.381 14.730 17.011 Atomic orbital electron populations 1.22071 0.93776 1.02442 1.02897 1.21674 0.95285 0.96155 0.83646 0.90707 1.22986 0.97322 0.99816 0.96284 1.21405 0.96245 0.87510 0.89116 0.92016 1.42559 1.12403 1.29999 1.52845 1.18976 0.90021 1.05782 1.21384 0.91993 1.25427 0.98630 0.98820 1.01926 1.69874 1.23762 1.22959 1.46400 0.85516 0.80582 0.76956 0.79317 1.21035 1.22866 1.16824 1.23566 0.95080 0.87696 0.98578 1.48480 1.51470 1.28683 1.04512 1.18107 0.80629 0.83409 0.82023 1.90746 1.39962 1.30809 1.83810 1.19631 1.03946 0.95623 0.93540 1.22347 0.94495 0.92266 1.01417 1.21486 0.96617 1.02212 0.90733 1.21550 0.97688 0.90142 1.00098 1.17650 1.05258 0.93759 0.82722 1.44909 1.36235 1.10333 1.11873 1.24749 1.02214 1.04578 0.86468 1.24431 1.03677 0.89179 1.03499 1.75078 1.13316 1.26380 1.01824 1.78447 1.22227 0.99360 1.10853 1.20777 0.96298 1.00507 0.90972 0.93294 0.89442 0.92264 0.88291 0.89234 0.79506 0.93398 0.90097 0.89889 0.82639 0.80210 0.79841 0.73829 0.75150 0.85785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.11 71.98 0.66 -2.88 16 2 C 0.14 3.39 3.48 45.34 0.16 3.55 16 3 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 4 C -0.13 -3.02 6.11 31.78 0.19 -2.83 16 5 C 0.17 5.22 3.69 46.38 0.17 5.39 16 6 H 0.06 2.10 8.13 -2.39 -0.02 2.08 16 7 N -0.74 -28.60 5.08 -316.37 -1.61 -30.21 16 8 C -0.23 -11.48 10.47 84.03 0.88 -10.60 16 9 H 0.06 3.41 8.06 -2.91 -0.02 3.39 16 10 C -0.06 -2.98 5.50 84.86 0.47 -2.51 16 11 N -0.98 -58.01 13.97 21.65 0.30 -57.71 16 12 Si 0.95 40.72 27.74 68.60 1.90 42.63 16 13 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 14 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 15 H -0.24 -9.06 6.52 99.48 0.65 -8.41 16 16 C 0.08 2.10 4.71 86.85 0.41 2.51 16 17 N -0.60 -16.71 3.06 -791.39 -2.42 -19.14 16 18 C 0.57 17.69 7.46 86.79 0.65 18.33 16 19 O -0.57 -21.31 15.57 -3.88 -0.06 -21.37 16 20 C -0.12 -3.29 5.70 -20.10 -0.11 -3.41 16 21 C -0.09 -1.80 7.93 22.54 0.18 -1.62 16 22 C -0.09 -1.34 10.02 22.21 0.22 -1.11 16 23 C -0.07 -1.00 9.45 22.44 0.21 -0.78 16 24 C 0.10 2.07 6.67 38.03 0.25 2.33 16 25 N -0.25 -5.50 3.56 -187.14 -0.67 -6.17 16 26 C -0.03 -0.43 10.91 83.37 0.91 0.47 16 27 C -0.05 -0.84 12.05 83.74 1.01 0.17 16 28 N -0.30 -8.10 12.39 -58.24 -0.72 -8.83 16 29 N -0.13 -3.88 12.42 37.02 0.46 -3.42 16 30 C -0.06 -1.75 9.16 22.65 0.21 -1.55 16 31 H 0.05 1.35 6.77 -2.39 -0.02 1.33 16 32 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.09 1.99 7.70 -2.39 -0.02 1.97 16 36 H 0.37 13.71 5.57 -92.72 -0.52 13.20 16 37 H 0.26 14.63 8.31 -92.70 -0.77 13.86 16 38 H 0.08 2.28 6.16 -2.39 -0.01 2.27 16 39 H 0.08 2.20 7.28 -2.39 -0.02 2.18 16 40 H 0.16 3.21 4.56 -2.91 -0.01 3.19 16 41 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 42 H 0.18 0.75 6.77 -2.91 -0.02 0.73 16 43 H 0.25 0.44 7.12 -2.91 -0.02 0.42 16 44 H 0.23 1.60 8.06 -2.91 -0.02 1.58 16 45 H 0.12 3.98 7.52 -2.91 -0.02 3.96 16 Total: -1.00 -76.97 369.57 4.11 -72.86 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.47 Total: 25.88 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 6.46 Total: 5.47 kcal Atomic # 7 Polarization: -120.81 SS G_CDS: -4.66 Total: -125.47 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.06 Total: -21.37 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.90 Total: 42.63 kcal Total: -76.97 4.11 -72.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989861482.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.798 kcal (2) G-P(sol) polarization free energy of solvation -76.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds