Wall clock time and date at job start Sat Apr 11 2020 06:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.58365 * 2 1 4 4 C 1.53190 * 109.58607 * 239.71451 * 2 1 3 5 5 H 1.08998 * 109.49716 * 305.53058 * 4 2 1 6 6 N 1.46505 * 109.49722 * 65.62225 * 4 2 1 7 7 C 1.34769 * 120.00287 * 204.99724 * 6 4 2 8 8 O 1.21487 * 119.99962 * 0.02562 * 7 6 4 9 9 C 1.48427 * 120.00303 * 180.02562 * 7 6 4 10 10 N 1.33493 * 119.22035 * 359.72550 * 9 7 6 11 11 N 1.28914 * 122.02513 * 179.73424 * 10 9 7 12 12 C 1.33816 * 119.74564 * 0.53739 * 11 10 9 13 13 C 1.40335 * 121.78204 * 179.73903 * 12 11 10 14 14 C 1.36190 * 119.62524 * 180.02562 * 13 12 11 15 15 C 1.39451 * 121.07289 * 0.02562 * 14 13 12 16 16 C 1.36134 * 121.00989 * 359.97113 * 15 14 13 17 17 C 1.40512 * 119.56690 * 0.02639 * 16 15 14 18 18 N 1.32064 * 119.22239 * 180.02562 * 9 7 6 19 19 C 1.53071 * 109.29531 * 185.71675 * 4 2 1 20 20 C 1.53040 * 109.65660 * 61.15466 * 19 4 2 21 21 C 1.53192 * 109.31260 * 298.69765 * 20 19 4 22 22 N 1.46921 * 108.77303 * 54.63842 * 21 20 19 23 23 C 1.36946 * 120.63238 * 126.41426 * 22 21 20 24 24 H 1.07993 * 119.99923 * 221.17875 * 23 22 21 25 25 C 1.38809 * 119.99848 * 41.17832 * 23 22 21 26 26 N 1.31620 * 119.99989 * 214.88862 * 25 23 22 27 27 Si 1.86807 * 120.00078 * 34.88814 * 25 23 22 28 28 H 1.48500 * 109.46730 * 84.62770 * 27 25 23 29 29 H 1.48498 * 109.46862 * 204.62445 * 27 25 23 30 30 H 1.48499 * 109.46917 * 324.62646 * 27 25 23 31 31 H 1.08998 * 109.47068 * 300.00073 * 1 2 3 32 32 H 1.08994 * 109.47323 * 60.00173 * 1 2 3 33 33 H 1.09008 * 109.46940 * 180.02562 * 1 2 3 34 34 H 0.97006 * 119.99400 * 25.00536 * 6 4 2 35 35 H 1.07993 * 120.18957 * 359.97438 * 13 12 11 36 36 H 1.07996 * 119.46411 * 179.97438 * 14 13 12 37 37 H 1.07993 * 119.49201 * 179.97438 * 15 14 13 38 38 H 1.07995 * 120.21708 * 180.02562 * 16 15 14 39 39 H 1.09001 * 109.34467 * 301.13294 * 19 4 2 40 40 H 1.09002 * 109.45566 * 181.24369 * 19 4 2 41 41 H 1.09005 * 109.49532 * 178.75202 * 20 19 4 42 42 H 1.08997 * 109.52349 * 58.66846 * 20 19 4 43 43 H 1.09001 * 109.58868 * 294.84992 * 21 20 19 44 44 H 1.09002 * 109.58664 * 174.42359 * 21 20 19 45 45 H 0.96999 * 120.00099 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2463 5 1 1.6029 -1.7237 -1.2934 6 7 1.6704 0.0297 -2.4435 7 6 1.5471 -0.6004 -3.6284 8 8 1.7449 -1.7967 -3.7038 9 6 1.1697 0.1672 -4.8414 10 7 0.9505 1.4801 -4.7399 11 7 0.6251 2.1997 -5.7588 12 6 0.4884 1.6263 -6.9601 13 6 0.1305 2.3677 -8.0966 14 6 0.0031 1.7390 -9.2979 15 6 0.2222 0.3672 -9.4192 16 6 0.5709 -0.3855 -8.3397 17 6 0.7120 0.2277 -7.0833 18 7 1.0527 -0.4659 -5.9945 19 6 3.5675 -0.8494 -1.1691 20 6 3.9569 -1.6656 0.0656 21 6 3.4651 -0.9452 1.3249 22 7 2.0226 -0.6980 1.1953 23 6 1.1538 -1.1099 2.1705 24 1 0.2057 -1.5497 1.8983 25 6 1.4917 -0.9622 3.5087 26 7 1.1109 -1.8653 4.3872 27 14 2.4870 0.5184 4.0628 28 1 1.5751 1.6650 4.3054 29 1 3.2104 0.1873 5.3166 30 1 3.4665 0.8796 3.0067 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0278 0.0005 34 1 1.5123 0.9849 -2.3832 35 1 -0.0438 3.4306 -8.0188 36 1 -0.2729 2.3120 -10.1707 37 1 0.1137 -0.1053 -10.3841 38 1 0.7379 -1.4469 -8.4483 39 1 4.0060 0.1460 -1.0995 40 1 3.9378 -1.3474 -2.0652 41 1 5.0413 -1.7693 0.1059 42 1 3.4988 -2.6530 0.0089 43 1 3.9903 0.0040 1.4316 44 1 3.6519 -1.5688 2.1991 45 1 1.3467 -1.7619 5.3223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993588318.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:49 Heat of formation + Delta-G solvation = 92.682772 kcal Electronic energy + Delta-G solvation = -29139.344362 eV Core-core repulsion = 25158.743795 eV Total energy + Delta-G solvation = -3980.600567 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.43708 -39.90833 -38.54866 -37.75436 -35.69692 -34.46414 -32.89328 -32.45949 -31.69688 -31.45096 -29.91276 -27.10465 -26.34057 -25.79846 -24.83108 -23.11333 -22.77843 -21.14349 -20.77209 -19.90478 -19.72675 -19.12519 -17.73206 -16.66043 -16.49076 -16.41585 -15.89259 -15.49296 -14.99825 -14.84380 -14.73293 -14.35530 -14.09620 -13.64207 -13.52874 -13.45922 -13.13362 -12.97303 -12.85311 -12.55853 -12.50072 -12.35468 -11.94962 -11.93197 -11.85898 -11.39614 -11.14187 -10.74701 -10.58118 -10.42562 -10.40279 -10.30454 -10.13534 -9.98647 -9.79134 -9.66467 -9.50236 -9.30188 -8.84261 -8.35111 -6.74360 -6.07973 -3.39501 -0.76435 -0.35070 1.11765 1.85433 2.51647 2.78919 3.03681 3.38415 3.41500 3.44528 3.52060 3.56995 3.72990 3.98219 4.12043 4.38128 4.56580 4.58043 4.64579 4.92575 4.95229 5.15748 5.24413 5.31662 5.35333 5.36367 5.43520 5.59814 5.61587 5.79098 5.89867 5.93499 6.09709 6.24302 6.33468 6.37646 6.38978 6.44490 6.52058 6.56432 6.62081 6.87871 6.91507 7.04304 7.11612 7.46227 7.81368 8.02495 8.12102 8.42506 8.98967 9.71221 10.18629 11.07132 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026658 B = 0.002382 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.098408 B =11751.018128 C =12083.337200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.164 3.836 3 H 0.033 0.967 4 C 0.130 3.870 5 H 0.094 0.906 6 N -0.691 5.691 7 C 0.584 3.416 8 O -0.500 6.500 9 C 0.224 3.776 10 N -0.233 5.233 11 N -0.139 5.139 12 C 0.017 3.983 13 C -0.066 4.066 14 C -0.091 4.091 15 C -0.073 4.073 16 C -0.086 4.086 17 C 0.133 3.867 18 N -0.395 5.395 19 C -0.120 4.120 20 C -0.133 4.133 21 C 0.140 3.860 22 N -0.589 5.589 23 C -0.277 4.277 24 H 0.078 0.922 25 C 0.052 3.948 26 N -0.878 5.878 27 Si 0.843 3.157 28 H -0.288 1.288 29 H -0.298 1.298 30 H -0.260 1.260 31 H 0.067 0.933 32 H 0.039 0.961 33 H 0.058 0.942 34 H 0.409 0.591 35 H 0.152 0.848 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.152 0.848 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.026 0.974 44 H 0.069 0.931 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.535 8.309 -28.667 29.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.057 3.943 3 H 0.050 0.950 4 C 0.025 3.975 5 H 0.112 0.888 6 N -0.343 5.343 7 C 0.363 3.637 8 O -0.371 6.371 9 C -0.049 4.049 10 N -0.094 5.094 11 N -0.003 5.003 12 C -0.115 4.115 13 C -0.088 4.088 14 C -0.112 4.112 15 C -0.095 4.095 16 C -0.105 4.105 17 C -0.007 4.007 18 N -0.117 5.117 19 C -0.158 4.158 20 C -0.173 4.173 21 C 0.015 3.985 22 N -0.313 5.313 23 C -0.404 4.404 24 H 0.095 0.905 25 C -0.151 4.151 26 N -0.516 5.516 27 Si 0.670 3.330 28 H -0.215 1.215 29 H -0.224 1.224 30 H -0.184 1.184 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.245 0.755 35 H 0.169 0.831 36 H 0.163 0.837 37 H 0.164 0.836 38 H 0.170 0.830 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.044 0.956 44 H 0.088 0.912 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.286 7.615 -27.529 28.564 hybrid contribution 0.380 1.030 -0.343 1.151 sum 0.094 8.645 -27.873 29.183 Atomic orbital electron populations 1.21800 0.94872 1.02190 1.00466 1.20697 0.94030 0.93441 0.86171 0.94973 1.21907 0.95329 0.97118 0.83103 0.88792 1.45954 1.68008 1.13139 1.07197 1.16971 0.79121 0.86212 0.81407 1.90837 1.48733 1.13236 1.84298 1.24609 0.96007 0.89774 0.94493 1.73977 1.07809 1.05225 1.22409 1.74500 1.02897 1.27584 0.95276 1.21023 1.00636 0.93770 0.96104 1.20826 0.97209 1.00994 0.89798 1.21254 0.97125 0.94837 0.97976 1.21275 0.95005 0.93897 0.99319 1.20958 0.98736 1.01730 0.89120 1.19776 0.95694 0.90787 0.94398 1.69127 1.07212 1.37565 0.97830 1.21795 0.95167 1.00315 0.98549 1.22032 0.99491 1.00001 0.95772 1.21368 0.84569 0.96835 0.95734 1.44282 1.02532 1.65541 1.18989 1.18562 1.02392 1.35266 0.84201 0.90485 1.25564 0.96797 0.96894 0.95852 1.70083 1.46984 1.31290 1.03258 0.87370 0.80749 0.86813 0.78060 1.21508 1.22428 1.18433 0.91390 0.94188 0.92317 0.75545 0.83078 0.83677 0.83616 0.82997 0.92417 0.92624 0.92554 0.91585 0.95612 0.91231 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.96 37.16 0.30 -2.24 16 2 C 0.16 3.16 3.03 -67.60 -0.20 2.96 16 3 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.13 2.29 2.00 -67.79 -0.14 2.16 16 5 H 0.09 1.89 7.58 -51.93 -0.39 1.49 16 6 N -0.69 -10.62 4.57 -54.43 -0.25 -10.87 16 7 C 0.58 9.67 7.82 -12.07 -0.09 9.57 16 8 O -0.50 -9.79 16.53 5.38 0.09 -9.70 16 9 C 0.22 3.34 7.65 -156.56 -1.20 2.15 16 10 N -0.23 -3.21 10.72 32.10 0.34 -2.86 16 11 N -0.14 -1.71 11.68 32.28 0.38 -1.34 16 12 C 0.02 0.18 6.68 -84.71 -0.57 -0.39 16 13 C -0.07 -0.40 10.00 -39.53 -0.40 -0.80 16 14 C -0.09 -0.32 9.95 -39.87 -0.40 -0.72 16 15 C -0.07 -0.28 9.95 -39.89 -0.40 -0.68 16 16 C -0.09 -0.61 10.01 -39.48 -0.40 -1.01 16 17 C 0.13 1.47 6.61 -84.77 -0.56 0.91 16 18 N -0.40 -5.67 10.22 -8.99 -0.09 -5.76 16 19 C -0.12 -2.02 5.46 -26.67 -0.15 -2.17 16 20 C -0.13 -2.41 6.08 -26.61 -0.16 -2.57 16 21 C 0.14 2.99 4.59 -3.71 -0.02 2.97 16 22 N -0.59 -13.54 2.47 -164.78 -0.41 -13.95 16 23 C -0.28 -7.40 8.42 -15.06 -0.13 -7.52 16 24 H 0.08 2.22 6.82 -52.49 -0.36 1.86 16 25 C 0.05 1.45 4.82 -17.43 -0.08 1.36 16 26 N -0.88 -26.00 13.97 55.49 0.78 -25.22 16 27 Si 0.84 21.02 27.40 -169.99 -4.66 16.36 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 30 H -0.26 -6.18 5.24 56.52 0.30 -5.88 16 31 H 0.07 1.35 7.69 -51.93 -0.40 0.95 16 32 H 0.04 0.63 7.79 -51.93 -0.40 0.22 16 33 H 0.06 1.17 7.40 -51.92 -0.38 0.79 16 34 H 0.41 5.55 7.91 -40.82 -0.32 5.23 16 35 H 0.15 0.61 8.06 -52.49 -0.42 0.18 16 36 H 0.15 0.04 8.06 -52.49 -0.42 -0.38 16 37 H 0.15 0.10 8.06 -52.49 -0.42 -0.32 16 38 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.03 0.55 6.71 -51.93 -0.35 0.20 16 44 H 0.07 1.60 7.02 -51.93 -0.36 1.24 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 368.22 15.07 5.55 5.55 Total: -1.00 -33.33 368.22 -8.87 -42.20 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.02 Total: 1.61 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -4.58 Total: 3.98 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: 0.75 Total: -60.01 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.66 Total: 16.36 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.33 -8.87 -42.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993588318.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.885 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds