Wall clock time and date at job start Sat Apr 11 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.58365 * 2 1 4 4 C 1.53190 * 109.58607 * 239.71451 * 2 1 3 5 5 H 1.08998 * 109.49716 * 305.53058 * 4 2 1 6 6 N 1.46505 * 109.49722 * 65.62225 * 4 2 1 7 7 C 1.34769 * 120.00287 * 204.99724 * 6 4 2 8 8 O 1.21487 * 119.99962 * 0.02562 * 7 6 4 9 9 C 1.48427 * 120.00303 * 180.02562 * 7 6 4 10 10 N 1.33493 * 119.22035 * 359.72550 * 9 7 6 11 11 N 1.28914 * 122.02513 * 179.73424 * 10 9 7 12 12 C 1.33816 * 119.74564 * 0.53739 * 11 10 9 13 13 C 1.40335 * 121.78204 * 179.73903 * 12 11 10 14 14 C 1.36190 * 119.62524 * 180.02562 * 13 12 11 15 15 C 1.39451 * 121.07289 * 0.02562 * 14 13 12 16 16 C 1.36134 * 121.00989 * 359.97113 * 15 14 13 17 17 C 1.40512 * 119.56690 * 0.02639 * 16 15 14 18 18 N 1.32064 * 119.22239 * 180.02562 * 9 7 6 19 19 C 1.53071 * 109.29531 * 185.71675 * 4 2 1 20 20 C 1.53040 * 109.65660 * 61.15466 * 19 4 2 21 21 C 1.53192 * 109.31260 * 298.69765 * 20 19 4 22 22 N 1.46921 * 108.77303 * 54.63842 * 21 20 19 23 23 C 1.36946 * 120.63238 * 126.41426 * 22 21 20 24 24 H 1.07993 * 119.99923 * 221.17875 * 23 22 21 25 25 C 1.38809 * 119.99848 * 41.17832 * 23 22 21 26 26 N 1.31620 * 119.99989 * 214.88862 * 25 23 22 27 27 Si 1.86807 * 120.00078 * 34.88814 * 25 23 22 28 28 H 1.48500 * 109.46730 * 84.62770 * 27 25 23 29 29 H 1.48498 * 109.46862 * 204.62445 * 27 25 23 30 30 H 1.48499 * 109.46917 * 324.62646 * 27 25 23 31 31 H 1.08998 * 109.47068 * 300.00073 * 1 2 3 32 32 H 1.08994 * 109.47323 * 60.00173 * 1 2 3 33 33 H 1.09008 * 109.46940 * 180.02562 * 1 2 3 34 34 H 0.97006 * 119.99400 * 25.00536 * 6 4 2 35 35 H 1.07993 * 120.18957 * 359.97438 * 13 12 11 36 36 H 1.07996 * 119.46411 * 179.97438 * 14 13 12 37 37 H 1.07993 * 119.49201 * 179.97438 * 15 14 13 38 38 H 1.07995 * 120.21708 * 180.02562 * 16 15 14 39 39 H 1.09001 * 109.34467 * 301.13294 * 19 4 2 40 40 H 1.09002 * 109.45566 * 181.24369 * 19 4 2 41 41 H 1.09005 * 109.49532 * 178.75202 * 20 19 4 42 42 H 1.08997 * 109.52349 * 58.66846 * 20 19 4 43 43 H 1.09001 * 109.58868 * 294.84992 * 21 20 19 44 44 H 1.09002 * 109.58664 * 174.42359 * 21 20 19 45 45 H 0.96999 * 120.00099 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2463 5 1 1.6029 -1.7237 -1.2934 6 7 1.6704 0.0297 -2.4435 7 6 1.5471 -0.6004 -3.6284 8 8 1.7449 -1.7967 -3.7038 9 6 1.1697 0.1672 -4.8414 10 7 0.9505 1.4801 -4.7399 11 7 0.6251 2.1997 -5.7588 12 6 0.4884 1.6263 -6.9601 13 6 0.1305 2.3677 -8.0966 14 6 0.0031 1.7390 -9.2979 15 6 0.2222 0.3672 -9.4192 16 6 0.5709 -0.3855 -8.3397 17 6 0.7120 0.2277 -7.0833 18 7 1.0527 -0.4659 -5.9945 19 6 3.5675 -0.8494 -1.1691 20 6 3.9569 -1.6656 0.0656 21 6 3.4651 -0.9452 1.3249 22 7 2.0226 -0.6980 1.1953 23 6 1.1538 -1.1099 2.1705 24 1 0.2057 -1.5497 1.8983 25 6 1.4917 -0.9622 3.5087 26 7 1.1109 -1.8653 4.3872 27 14 2.4870 0.5184 4.0628 28 1 1.5751 1.6650 4.3054 29 1 3.2104 0.1873 5.3166 30 1 3.4665 0.8796 3.0067 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0278 0.0005 34 1 1.5123 0.9849 -2.3832 35 1 -0.0438 3.4306 -8.0188 36 1 -0.2729 2.3120 -10.1707 37 1 0.1137 -0.1053 -10.3841 38 1 0.7379 -1.4469 -8.4483 39 1 4.0060 0.1460 -1.0995 40 1 3.9378 -1.3474 -2.0652 41 1 5.0413 -1.7693 0.1059 42 1 3.4988 -2.6530 0.0089 43 1 3.9903 0.0040 1.4316 44 1 3.6519 -1.5688 2.1991 45 1 1.3467 -1.7619 5.3223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993588318.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:48 Heat of formation + Delta-G solvation = 69.074022 kcal Electronic energy + Delta-G solvation = -29140.368114 eV Core-core repulsion = 25158.743795 eV Total energy + Delta-G solvation = -3981.624319 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.24104 -41.20668 -39.52175 -38.97089 -36.58706 -35.97350 -34.51910 -33.58945 -33.23112 -32.12662 -31.42741 -28.31004 -27.45133 -26.85579 -26.55462 -24.25156 -23.67442 -22.42812 -22.33458 -21.38780 -20.55271 -20.15601 -18.74381 -18.33436 -17.44301 -17.39680 -17.26493 -16.67808 -16.13959 -16.01598 -15.96715 -15.63083 -15.34607 -15.22137 -14.99865 -14.75858 -14.39638 -14.05607 -13.76969 -13.70233 -13.64061 -13.45402 -13.19296 -13.10759 -13.02228 -12.73893 -12.65228 -12.52279 -12.39304 -12.06620 -11.89710 -11.82857 -11.59029 -11.48297 -11.25161 -10.76269 -10.64092 -10.49793 -10.21373 -9.83489 -8.66202 -8.23185 -5.51293 -1.47456 -1.12562 0.50277 1.02523 1.39757 1.41354 1.48564 1.56989 1.88858 2.20721 2.50037 2.62188 2.65318 2.84300 2.98580 3.21171 3.43594 3.64921 3.74525 3.82599 3.93108 3.97078 4.11765 4.18429 4.27651 4.39168 4.41608 4.54980 4.68162 4.70747 4.74569 4.80133 4.88996 4.96627 5.02440 5.06202 5.07402 5.13138 5.17673 5.22519 5.31949 5.43672 5.49480 5.55721 5.64871 5.95546 6.23342 6.28162 6.83755 6.95516 7.02067 7.65784 8.15218 8.96398 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026658 B = 0.002382 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.098408 B =11751.018128 C =12083.337200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.162 3.838 3 H 0.054 0.946 4 C 0.143 3.857 5 H 0.063 0.937 6 N -0.680 5.680 7 C 0.589 3.411 8 O -0.540 6.540 9 C 0.201 3.799 10 N -0.249 5.249 11 N -0.157 5.157 12 C 0.011 3.989 13 C -0.079 4.079 14 C -0.061 4.061 15 C -0.039 4.039 16 C -0.110 4.110 17 C 0.112 3.888 18 N -0.426 5.426 19 C -0.113 4.113 20 C -0.125 4.125 21 C 0.137 3.863 22 N -0.603 5.603 23 C -0.262 4.262 24 H 0.042 0.958 25 C 0.000 4.000 26 N -0.927 5.927 27 Si 0.907 3.093 28 H -0.292 1.292 29 H -0.303 1.303 30 H -0.237 1.237 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.034 0.966 34 H 0.419 0.581 35 H 0.173 0.827 36 H 0.195 0.805 37 H 0.192 0.808 38 H 0.157 0.843 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.046 0.954 43 H 0.039 0.961 44 H 0.046 0.954 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.092 11.115 -33.523 35.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.056 3.944 3 H 0.072 0.928 4 C 0.037 3.963 5 H 0.082 0.918 6 N -0.332 5.332 7 C 0.369 3.631 8 O -0.415 6.415 9 C -0.072 4.072 10 N -0.110 5.110 11 N -0.019 5.019 12 C -0.123 4.123 13 C -0.100 4.100 14 C -0.081 4.081 15 C -0.062 4.062 16 C -0.129 4.129 17 C -0.027 4.027 18 N -0.148 5.148 19 C -0.151 4.151 20 C -0.164 4.164 21 C 0.012 3.988 22 N -0.327 5.327 23 C -0.391 4.391 24 H 0.060 0.940 25 C -0.199 4.199 26 N -0.569 5.569 27 Si 0.734 3.266 28 H -0.219 1.219 29 H -0.230 1.230 30 H -0.161 1.161 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.257 0.743 35 H 0.190 0.810 36 H 0.212 0.788 37 H 0.209 0.791 38 H 0.175 0.825 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.358 10.484 -32.397 34.053 hybrid contribution 0.042 0.159 0.722 0.740 sum 0.400 10.642 -31.675 33.418 Atomic orbital electron populations 1.21714 0.94806 1.00871 1.01177 1.20828 0.94206 0.94137 0.85223 0.92824 1.21526 0.95924 0.95589 0.83234 0.91842 1.45718 1.67729 1.13385 1.06345 1.17189 0.78047 0.85806 0.82051 1.90798 1.50618 1.14954 1.85089 1.24011 0.98842 0.90255 0.94050 1.73880 1.09211 1.04516 1.23369 1.74363 1.03687 1.27722 0.96082 1.21533 1.00356 0.93920 0.96510 1.21243 0.97466 1.02079 0.89232 1.21903 0.93101 0.94809 0.98330 1.21899 0.90488 0.93934 0.99837 1.21237 1.00445 1.02643 0.88580 1.20353 0.96120 0.91470 0.94770 1.69016 1.08327 1.38847 0.98648 1.21741 0.94246 1.01189 0.97966 1.21921 1.01135 0.98688 0.94660 1.21415 0.83620 0.97320 0.96447 1.44384 1.02908 1.66306 1.19147 1.18398 1.01622 1.33879 0.85178 0.94035 1.26075 0.98961 0.98894 0.95984 1.70180 1.50089 1.33123 1.03528 0.86348 0.79621 0.82876 0.77781 1.21925 1.23028 1.16110 0.92849 0.91171 0.94687 0.74264 0.80956 0.78769 0.79061 0.82500 0.90405 0.92308 0.89512 0.93474 0.94271 0.93518 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.92 7.96 71.98 0.57 -4.34 16 2 C 0.16 6.25 3.03 44.97 0.14 6.39 16 3 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 4 C 0.14 5.09 2.00 45.08 0.09 5.18 16 5 H 0.06 2.68 7.58 -2.39 -0.02 2.66 16 6 N -0.68 -21.12 4.57 -444.43 -2.03 -23.15 16 7 C 0.59 20.30 7.82 86.96 0.68 20.98 16 8 O -0.54 -22.31 16.53 -3.67 -0.06 -22.37 16 9 C 0.20 6.24 7.65 137.45 1.05 7.29 16 10 N -0.25 -7.01 10.72 -52.35 -0.56 -7.57 16 11 N -0.16 -3.83 11.68 -51.79 -0.60 -4.43 16 12 C 0.01 0.21 6.68 40.33 0.27 0.48 16 13 C -0.08 -0.65 10.00 22.30 0.22 -0.42 16 14 C -0.06 -0.06 9.95 22.09 0.22 0.16 16 15 C -0.04 -0.09 9.95 22.07 0.22 0.13 16 16 C -0.11 -1.29 10.01 22.33 0.22 -1.07 16 17 C 0.11 2.40 6.61 40.42 0.27 2.67 16 18 N -0.43 -12.67 10.22 -182.37 -1.86 -14.53 16 19 C -0.11 -3.70 5.46 30.63 0.17 -3.53 16 20 C -0.12 -4.40 6.08 30.67 0.19 -4.21 16 21 C 0.14 5.73 4.59 86.36 0.40 6.13 16 22 N -0.60 -27.98 2.47 -675.24 -1.67 -29.65 16 23 C -0.26 -14.52 8.42 84.03 0.71 -13.82 16 24 H 0.04 2.57 6.82 -2.91 -0.02 2.55 16 25 C 0.00 -0.01 4.82 84.86 0.41 0.40 16 26 N -0.93 -57.22 13.97 21.65 0.30 -56.92 16 27 Si 0.91 44.15 27.40 68.60 1.88 46.03 16 28 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 29 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 30 H -0.24 -10.56 5.24 99.48 0.52 -10.04 16 31 H 0.05 2.18 7.69 -2.39 -0.02 2.16 16 32 H 0.07 2.22 7.79 -2.39 -0.02 2.20 16 33 H 0.03 1.48 7.40 -2.38 -0.02 1.46 16 34 H 0.42 11.24 7.91 -92.70 -0.73 10.51 16 35 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 36 H 0.20 -1.54 8.06 -2.91 -0.02 -1.56 16 37 H 0.19 -1.18 8.06 -2.91 -0.02 -1.21 16 38 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 39 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 42 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.04 1.56 6.71 -2.39 -0.02 1.54 16 44 H 0.05 2.16 7.02 -2.39 -0.02 2.14 16 45 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -79.66 368.22 1.33 -78.34 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.12 Total: 11.84 kcal Atomic # 6 Polarization: 16.59 SS G_CDS: 5.82 Total: 22.41 kcal Atomic # 7 Polarization: -129.82 SS G_CDS: -6.43 Total: -136.25 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.06 Total: -22.37 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.88 Total: 46.03 kcal Total: -79.66 1.33 -78.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993588318.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.412 kcal (2) G-P(sol) polarization free energy of solvation -79.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds