Wall clock time and date at job start Sat Apr 11 2020 06:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.58821 * 2 1 4 4 C 1.53190 * 109.70508 * 120.35433 * 2 1 3 5 5 H 1.08992 * 109.50270 * 294.44706 * 4 2 1 6 6 N 1.46511 * 109.49416 * 54.51204 * 4 2 1 7 7 C 1.34771 * 119.99655 * 204.99913 * 6 4 2 8 8 O 1.21478 * 120.00663 * 0.02562 * 7 6 4 9 9 C 1.48436 * 119.99598 * 179.97438 * 7 6 4 10 10 N 1.33487 * 119.22256 * 359.73409 * 9 7 6 11 11 N 1.28923 * 122.02769 * 179.69232 * 10 9 7 12 12 C 1.33811 * 119.73934 * 0.56867 * 11 10 9 13 13 C 1.40344 * 121.78174 * 179.74032 * 12 11 10 14 14 C 1.36185 * 119.62688 * 179.97438 * 13 12 11 15 15 C 1.39449 * 121.07003 * 359.97438 * 14 13 12 16 16 C 1.36129 * 121.01433 * 0.02562 * 15 14 13 17 17 C 1.40507 * 119.56586 * 359.97438 * 16 15 14 18 18 N 1.32056 * 119.22079 * 179.97438 * 9 7 6 19 19 C 1.53040 * 109.31492 * 174.49064 * 4 2 1 20 20 C 1.53038 * 109.53828 * 298.64023 * 19 4 2 21 21 C 1.52766 * 109.38434 * 61.23830 * 20 19 4 22 22 N 1.46922 * 109.58706 * 239.72026 * 2 1 3 23 23 C 1.36928 * 120.63248 * 6.43715 * 22 2 1 24 24 H 1.08007 * 119.99895 * 332.62233 * 23 22 2 25 25 C 1.38813 * 120.00205 * 152.61834 * 23 22 2 26 26 N 1.31614 * 120.00178 * 334.22527 * 25 23 22 27 27 Si 1.86804 * 120.00038 * 154.22668 * 25 23 22 28 28 H 1.48500 * 109.47334 * 180.02562 * 27 25 23 29 29 H 1.48493 * 109.47105 * 300.00291 * 27 25 23 30 30 H 1.48502 * 109.47255 * 59.99936 * 27 25 23 31 31 H 1.08994 * 109.47202 * 180.28067 * 1 2 3 32 32 H 1.09003 * 109.47062 * 300.28169 * 1 2 3 33 33 H 1.09000 * 109.47146 * 60.27907 * 1 2 3 34 34 H 0.97001 * 120.00001 * 24.99379 * 6 4 2 35 35 H 1.08000 * 120.18296 * 359.95429 * 13 12 11 36 36 H 1.07995 * 119.46568 * 179.97438 * 14 13 12 37 37 H 1.08005 * 119.49130 * 180.02562 * 15 14 13 38 38 H 1.08007 * 120.22014 * 179.97438 * 16 15 14 39 39 H 1.09000 * 109.45827 * 58.66095 * 19 4 2 40 40 H 1.09000 * 109.46323 * 178.63644 * 19 4 2 41 41 H 1.09000 * 109.49787 * 181.31657 * 20 19 4 42 42 H 1.09000 * 109.50018 * 301.37948 * 20 19 4 43 43 H 1.08998 * 109.50941 * 185.70314 * 21 20 19 44 44 H 1.08997 * 109.42694 * 65.42523 * 21 20 19 45 45 H 0.96996 * 119.99637 * 354.53076 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7288 1.2445 5 1 1.7689 -0.1673 2.1364 6 7 1.4565 -2.0684 1.3067 7 6 1.3363 -2.6973 2.4926 8 8 1.7165 -2.1534 3.5100 9 6 0.7380 -4.0543 2.5556 10 7 0.3194 -4.6350 1.4289 11 7 -0.2027 -5.8137 1.4204 12 6 -0.3466 -6.4843 2.5693 13 6 -0.9141 -7.7673 2.6103 14 6 -1.0390 -8.4103 3.8042 15 6 -0.6112 -7.8151 4.9905 16 6 -0.0559 -6.5722 4.9911 17 6 0.0897 -5.8773 3.7786 18 7 0.6280 -4.6566 3.7257 19 6 3.5706 -0.8443 1.1674 20 6 3.9602 -1.6607 -0.0671 21 6 3.4647 -0.9473 -1.3238 22 7 2.0225 -0.6979 -1.1954 23 6 1.1534 -1.1132 -2.1685 24 1 0.1294 -1.3448 -1.9150 25 6 1.5883 -1.2364 -3.4810 26 7 2.6045 -0.5171 -3.9078 27 14 0.7313 -2.4232 -4.6415 28 1 1.3819 -2.3681 -5.9752 29 1 0.8292 -3.8024 -4.1001 30 1 -0.6983 -2.0429 -4.7715 31 1 -0.3633 -1.0276 0.0050 32 1 -0.3633 0.5182 0.8875 33 1 -0.3633 0.5095 -0.8925 34 1 1.1524 -2.5026 0.4943 35 1 -1.2501 -8.2417 1.7001 36 1 -1.4765 -9.3973 3.8328 37 1 -0.7222 -8.3483 5.9231 38 1 0.2707 -6.1231 5.9175 39 1 4.0071 0.1519 1.0965 40 1 3.9430 -1.3411 2.0633 41 1 5.0446 -1.7624 -0.1086 42 1 3.5041 -2.6490 -0.0085 43 1 3.6510 -1.5744 -2.1957 44 1 3.9912 0.0007 -1.4338 45 1 2.9987 0.1556 -3.3309 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993588324.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:04 Heat of formation + Delta-G solvation = 90.042453 kcal Electronic energy + Delta-G solvation = -29983.664475 eV Core-core repulsion = 26002.949415 eV Total energy + Delta-G solvation = -3980.715060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 2.73 seconds Orbital eigenvalues (eV) -42.27615 -39.87977 -38.45512 -37.68383 -35.52291 -34.22332 -32.80800 -32.30721 -31.66871 -31.26700 -29.30415 -26.90764 -26.26244 -25.71603 -24.87183 -22.96636 -22.45079 -21.32655 -20.91872 -19.63846 -19.27352 -18.75087 -17.65375 -16.99833 -16.52009 -16.30170 -15.52535 -15.39172 -14.83743 -14.75724 -14.59806 -14.27275 -13.89210 -13.56173 -13.38297 -13.31087 -13.12595 -12.84880 -12.68231 -12.65464 -12.40772 -12.21030 -11.83498 -11.76988 -11.48506 -11.23782 -10.99524 -10.80383 -10.60770 -10.23224 -10.17973 -10.04288 -10.01382 -9.99317 -9.77681 -9.55464 -9.17594 -9.13460 -8.70120 -8.33011 -6.88966 -6.04007 -3.20841 -0.61307 -0.18812 1.25920 2.00424 2.70438 2.92990 3.21038 3.52777 3.54978 3.57880 3.60250 3.74064 3.90512 4.17479 4.24510 4.50852 4.59974 4.70024 4.83885 5.07637 5.14517 5.28128 5.30339 5.43412 5.46196 5.48397 5.55596 5.61277 5.71573 5.81785 6.01871 6.02968 6.13147 6.15812 6.32930 6.38397 6.48521 6.53398 6.55098 6.62622 6.78620 6.85776 6.98292 7.11450 7.21937 7.71182 8.02963 8.03785 8.32237 8.59920 9.11268 9.86468 10.29020 11.24225 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012933 B = 0.003530 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.549786 B = 7930.913287 C = 9362.844719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.162 3.838 3 H 0.041 0.959 4 C 0.132 3.868 5 H 0.082 0.918 6 N -0.672 5.672 7 C 0.580 3.420 8 O -0.516 6.516 9 C 0.223 3.777 10 N -0.224 5.224 11 N -0.136 5.136 12 C 0.016 3.984 13 C -0.064 4.064 14 C -0.094 4.094 15 C -0.074 4.074 16 C -0.087 4.087 17 C 0.131 3.869 18 N -0.398 5.398 19 C -0.122 4.122 20 C -0.137 4.137 21 C 0.150 3.850 22 N -0.593 5.593 23 C -0.351 4.351 24 H 0.064 0.936 25 C -0.020 4.020 26 N -0.915 5.915 27 Si 1.059 2.941 28 H -0.287 1.287 29 H -0.291 1.291 30 H -0.293 1.293 31 H 0.055 0.945 32 H 0.039 0.961 33 H 0.065 0.935 34 H 0.422 0.578 35 H 0.152 0.848 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.151 0.849 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.080 0.920 44 H 0.017 0.983 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.930 -14.077 16.700 22.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.055 3.945 3 H 0.059 0.941 4 C 0.026 3.974 5 H 0.100 0.900 6 N -0.325 5.325 7 C 0.359 3.641 8 O -0.389 6.389 9 C -0.049 4.049 10 N -0.085 5.085 11 N 0.000 5.000 12 C -0.117 4.117 13 C -0.086 4.086 14 C -0.115 4.115 15 C -0.096 4.096 16 C -0.107 4.107 17 C -0.008 4.008 18 N -0.120 5.120 19 C -0.161 4.161 20 C -0.176 4.176 21 C 0.025 3.975 22 N -0.317 5.317 23 C -0.480 4.480 24 H 0.082 0.918 25 C -0.222 4.222 26 N -0.554 5.554 27 Si 0.889 3.111 28 H -0.213 1.213 29 H -0.218 1.218 30 H -0.220 1.220 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.261 0.739 35 H 0.169 0.831 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.168 0.832 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.035 0.965 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.468 -13.674 15.061 21.064 hybrid contribution -0.251 -0.054 1.935 1.952 sum -5.719 -13.728 16.996 22.584 Atomic orbital electron populations 1.21786 0.95292 1.01748 1.00514 1.20693 0.93716 0.93662 0.86430 0.94105 1.21718 0.93120 0.82076 1.00450 0.89995 1.45899 1.59570 1.18293 1.08722 1.17018 0.79891 0.82165 0.84979 1.90779 1.48967 1.64781 1.34375 1.24633 0.96022 0.97984 0.86249 1.74121 1.05650 1.03453 1.25282 1.74593 1.03774 0.99477 1.22119 1.21071 1.00121 0.98026 0.92458 1.20847 0.96621 0.91181 0.99954 1.21224 0.97856 1.00665 0.91733 1.21244 0.94794 0.94284 0.99285 1.20919 0.98951 0.94430 0.96383 1.19768 0.94926 0.91208 0.94905 1.69109 1.09315 1.06687 1.26938 1.21791 0.95132 1.00737 0.98399 1.21970 0.99199 0.99733 0.96699 1.20891 0.84133 0.96875 0.95644 1.44236 1.02664 1.65266 1.19563 1.19948 0.95346 1.44029 0.88651 0.91843 1.25757 1.00000 1.01063 0.95412 1.70778 1.26458 1.20239 1.37964 0.83614 0.75066 0.76272 0.76188 1.21315 1.21847 1.22038 0.92558 0.94184 0.91576 0.73865 0.83059 0.83757 0.83745 0.83153 0.91450 0.92715 0.93043 0.92473 0.90144 0.96505 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 7.73 37.16 0.29 -2.26 16 2 C 0.16 3.22 3.19 -67.60 -0.22 3.00 16 3 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 4 C 0.13 2.39 2.33 -67.81 -0.16 2.23 16 5 H 0.08 1.44 7.58 -51.93 -0.39 1.05 16 6 N -0.67 -12.31 3.45 -54.44 -0.19 -12.50 16 7 C 0.58 10.75 7.82 -12.06 -0.09 10.65 16 8 O -0.52 -10.47 16.52 5.39 0.09 -10.38 16 9 C 0.22 3.88 7.65 -156.57 -1.20 2.69 16 10 N -0.22 -3.86 10.72 32.10 0.34 -3.52 16 11 N -0.14 -2.09 11.68 32.28 0.38 -1.72 16 12 C 0.02 0.20 6.68 -84.71 -0.57 -0.37 16 13 C -0.06 -0.51 10.00 -39.53 -0.40 -0.91 16 14 C -0.09 -0.48 9.95 -39.87 -0.40 -0.88 16 15 C -0.07 -0.39 9.95 -39.89 -0.40 -0.78 16 16 C -0.09 -0.74 10.01 -39.49 -0.40 -1.14 16 17 C 0.13 1.68 6.61 -84.77 -0.56 1.12 16 18 N -0.40 -6.40 10.22 -8.99 -0.09 -6.49 16 19 C -0.12 -2.15 5.58 -26.69 -0.15 -2.30 16 20 C -0.14 -2.60 5.91 -26.83 -0.16 -2.76 16 21 C 0.15 3.38 4.68 -3.93 -0.02 3.36 16 22 N -0.59 -13.71 2.51 -165.04 -0.41 -14.13 16 23 C -0.35 -9.08 8.53 -15.06 -0.13 -9.21 16 24 H 0.06 1.64 6.23 -52.48 -0.33 1.31 16 25 C -0.02 -0.54 4.66 -17.43 -0.08 -0.62 16 26 N -0.91 -26.55 12.43 55.49 0.69 -25.86 16 27 Si 1.06 24.83 29.99 -169.99 -5.10 19.73 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 30 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 31 H 0.06 1.08 6.42 -51.93 -0.33 0.75 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.33 7.61 -51.93 -0.39 0.94 16 34 H 0.42 8.24 7.08 -40.82 -0.29 7.95 16 35 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.14 0.26 8.06 -52.49 -0.42 -0.17 16 37 H 0.14 0.27 8.06 -52.48 -0.42 -0.16 16 38 H 0.15 1.07 8.06 -52.48 -0.42 0.64 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 1.14 7.53 -51.93 -0.39 0.75 16 43 H 0.08 2.05 6.32 -51.93 -0.33 1.72 16 44 H 0.02 0.39 7.88 -51.93 -0.41 -0.02 16 45 H 0.27 7.86 6.77 -40.82 -0.28 7.58 16 LS Contribution 366.48 15.07 5.52 5.52 Total: -1.00 -32.20 366.48 -9.14 -41.34 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -5.74 Total: 6.18 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -4.62 Total: 1.82 kcal Atomic # 7 Polarization: -64.93 SS G_CDS: 0.72 Total: -64.21 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -5.10 Total: 19.73 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.20 -9.14 -41.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993588324.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.382 kcal (2) G-P(sol) polarization free energy of solvation -32.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.73 seconds