Wall clock time and date at job start Sat Apr 11 2020 06:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.50070 * 2 1 4 4 C 1.53188 * 109.49956 * 239.93078 * 2 1 3 5 5 N 1.46928 * 108.77451 * 185.41843 * 4 2 1 6 6 C 1.34781 * 120.62784 * 233.58268 * 5 4 2 7 7 O 1.21552 * 120.00171 * 5.85363 * 6 5 4 8 8 C 1.47849 * 119.99800 * 185.84351 * 6 5 4 9 9 C 1.40598 * 120.27530 * 41.58107 * 8 6 5 10 10 N 1.30818 * 121.52030 * 179.97438 * 9 8 6 11 11 C 1.33763 * 121.79671 * 359.97438 * 10 9 8 12 12 N 1.33884 * 120.62435 * 180.27655 * 11 10 9 13 13 C 1.31331 * 119.84680 * 180.24136 * 12 11 10 14 14 C 1.39756 * 120.77899 * 359.48207 * 13 12 11 15 15 N 1.31306 * 120.55108 * 0.26421 * 14 13 12 16 16 C 1.33669 * 119.70671 * 359.97438 * 15 14 13 17 17 C 1.38905 * 120.28189 * 221.54930 * 8 6 5 18 18 C 1.46921 * 118.73966 * 53.86047 * 5 4 2 19 19 C 1.53621 * 108.54535 * 306.09230 * 18 5 4 20 20 C 1.53040 * 109.49347 * 120.09600 * 2 1 3 21 21 H 1.08998 * 109.46598 * 61.29356 * 20 2 1 22 22 N 1.46508 * 109.46192 * 301.33594 * 20 2 1 23 23 C 1.36937 * 120.00190 * 155.00009 * 22 20 2 24 24 H 1.07993 * 119.99948 * 0.02562 * 23 22 20 25 25 C 1.38807 * 119.99848 * 180.02562 * 23 22 20 26 26 N 1.31619 * 120.00055 * 179.97438 * 25 23 22 27 27 Si 1.86800 * 119.99975 * 359.97438 * 25 23 22 28 28 H 1.48507 * 109.47166 * 90.00371 * 27 25 23 29 29 H 1.48507 * 109.47248 * 209.99750 * 27 25 23 30 30 H 1.48500 * 109.47390 * 329.99933 * 27 25 23 31 31 H 1.09004 * 109.46968 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47508 * 300.07022 * 1 2 3 33 33 H 1.09006 * 109.46649 * 60.07082 * 1 2 3 34 34 H 1.08994 * 109.58884 * 65.63089 * 4 2 1 35 35 H 1.09003 * 109.58974 * 305.20322 * 4 2 1 36 36 H 1.08001 * 119.24378 * 359.95051 * 9 8 6 37 37 H 1.07998 * 119.61049 * 179.76931 * 13 12 11 38 38 H 1.08001 * 119.72847 * 180.28139 * 14 13 12 39 39 H 1.08005 * 120.99027 * 0.02562 * 17 8 6 40 40 H 1.09002 * 109.58955 * 65.92834 * 18 5 4 41 41 H 1.09007 * 109.58622 * 186.35291 * 18 5 4 42 42 H 1.08999 * 109.63508 * 294.86830 * 19 18 5 43 43 H 1.08997 * 109.43693 * 174.72252 * 19 18 5 44 44 H 0.97002 * 119.99624 * 335.00683 * 22 20 2 45 45 H 0.97000 * 120.00220 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7235 -1.2497 5 7 3.5047 -0.8289 -1.1696 6 6 4.2812 -0.3860 -2.1782 7 8 3.7811 0.2016 -3.1174 8 6 5.7415 -0.6148 -2.1422 9 6 6.2549 -1.8511 -1.7122 10 7 7.5422 -2.0800 -1.6711 11 6 8.4349 -1.1528 -2.0354 12 7 9.7472 -1.4143 -1.9893 13 6 10.6105 -0.4911 -2.3460 14 6 10.1763 0.7626 -2.7853 15 7 8.8947 1.0421 -2.8444 16 6 7.9981 0.1194 -2.4818 17 6 6.6177 0.3895 -2.5334 18 6 4.1050 -1.4319 0.0282 19 6 3.5708 -0.6954 1.2660 20 6 2.0407 -0.7234 1.2482 21 1 1.6966 -1.7576 1.2350 22 7 1.5264 -0.0536 2.4454 23 6 1.3962 -0.7501 3.6171 24 1 1.6730 -1.7931 3.6589 25 6 0.9084 -0.1156 4.7512 26 7 0.7828 -0.7852 5.8773 27 14 0.4303 1.6888 4.6791 28 1 -1.0009 1.8069 4.3005 29 1 0.6428 2.3109 6.0107 30 1 1.2685 2.3831 3.6689 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5149 0.8892 33 1 -0.3633 0.5128 -0.8907 34 1 1.7640 -0.1575 -2.1388 35 1 1.6053 -1.7213 -1.2984 36 1 5.5707 -2.6296 -1.4084 37 1 11.6683 -0.7048 -2.3037 38 1 10.9009 1.5077 -3.0788 39 1 6.2506 1.3485 -2.8680 40 1 3.8338 -2.4863 0.0816 41 1 5.1896 -1.3333 -0.0176 42 1 3.9159 0.3385 1.2543 43 1 3.9332 -1.1903 2.1670 44 1 1.2780 0.8834 2.4079 45 1 0.4416 -0.3418 6.6698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036068120.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:40 Heat of formation + Delta-G solvation = 76.209166 kcal Electronic energy + Delta-G solvation = -29244.174219 eV Core-core repulsion = 25262.859303 eV Total energy + Delta-G solvation = -3981.314916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.17437 -40.56159 -38.62995 -37.79946 -35.47282 -34.94862 -33.17666 -32.36490 -31.71315 -31.50061 -29.93756 -27.38511 -25.97295 -25.85178 -24.82696 -23.32282 -22.81323 -21.73434 -21.10958 -19.93789 -19.41631 -18.40710 -18.21328 -17.57500 -16.72062 -16.24084 -15.95366 -15.68557 -15.44576 -15.10610 -14.86727 -14.48117 -14.19260 -13.85612 -13.82232 -13.43190 -13.28282 -13.24929 -13.09287 -12.57937 -12.48883 -12.27761 -12.20335 -12.00878 -11.86369 -11.50416 -11.21443 -11.11434 -10.96946 -10.79961 -10.61761 -10.31971 -10.19527 -9.86255 -9.80297 -9.64024 -9.57457 -9.22701 -8.99018 -8.74421 -7.33874 -5.83113 -3.19013 -0.53746 -0.24109 1.28606 1.94619 2.50035 2.76802 3.03554 3.32606 3.35556 3.41333 3.47120 3.50262 3.55362 4.02434 4.09751 4.17927 4.38371 4.53355 4.53514 4.76813 4.81415 4.93080 4.95764 5.07561 5.12497 5.31149 5.33836 5.38297 5.39954 5.53226 5.58280 5.73559 5.82693 5.85638 5.93166 6.00566 6.16302 6.20434 6.28459 6.39007 6.44018 6.60603 6.67120 6.85202 6.93930 7.17378 7.41302 7.84721 7.91921 8.35871 9.13718 9.86503 10.05906 11.35043 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015156 B = 0.002714 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.004591 B =10313.778421 C =11093.904506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.115 4.115 3 H 0.070 0.930 4 C 0.121 3.879 5 N -0.596 5.596 6 C 0.565 3.435 7 O -0.531 6.531 8 C -0.168 4.168 9 C 0.193 3.807 10 N -0.454 5.454 11 C 0.271 3.729 12 N -0.417 5.417 13 C 0.112 3.888 14 C 0.073 3.927 15 N -0.406 5.406 16 C 0.021 3.979 17 C 0.030 3.970 18 C 0.097 3.903 19 C -0.152 4.152 20 C 0.188 3.812 21 H 0.059 0.941 22 N -0.745 5.745 23 C -0.244 4.244 24 H 0.091 0.909 25 C 0.006 3.994 26 N -0.932 5.932 27 Si 0.882 3.118 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.046 0.954 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.182 0.818 37 H 0.185 0.815 38 H 0.184 0.816 39 H 0.162 0.838 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.361 0.639 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.829 0.795 -19.589 25.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.135 4.135 3 H 0.088 0.912 4 C -0.001 4.001 5 N -0.328 5.328 6 C 0.351 3.649 7 O -0.409 6.409 8 C -0.175 4.175 9 C 0.015 3.985 10 N -0.163 5.163 11 C 0.031 3.969 12 N -0.131 5.131 13 C -0.067 4.067 14 C -0.104 4.104 15 N -0.120 5.120 16 C -0.105 4.105 17 C 0.002 3.998 18 C -0.026 4.026 19 C -0.193 4.193 20 C 0.078 3.922 21 H 0.077 0.923 22 N -0.386 5.386 23 C -0.373 4.373 24 H 0.109 0.891 25 C -0.190 4.190 26 N -0.580 5.580 27 Si 0.712 3.288 28 H -0.210 1.210 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.199 0.801 37 H 0.202 0.798 38 H 0.201 0.799 39 H 0.179 0.821 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.102 0.898 44 H 0.194 0.806 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.710 0.047 -19.567 25.093 hybrid contribution -0.409 2.149 0.045 2.188 sum 15.301 2.196 -19.522 24.901 Atomic orbital electron populations 1.21668 0.93924 1.02273 1.01646 1.21800 0.96735 1.00138 0.94785 0.91200 1.21789 0.77445 1.01388 0.99479 1.48094 1.07476 1.59585 1.17660 1.17854 0.85126 0.79113 0.82781 1.90807 1.74411 1.41150 1.34504 1.21139 0.95484 0.96610 1.04297 1.23510 0.91084 0.94787 0.89083 1.67534 1.01835 1.31607 1.15292 1.20096 0.91908 0.89146 0.95724 1.68347 1.00484 1.32711 1.11603 1.24351 1.01162 0.89605 0.91627 1.24249 0.93123 0.97358 0.95639 1.68609 1.02429 1.31164 1.09841 1.20167 0.95147 0.92941 1.02275 1.21685 0.89173 0.99485 0.89425 1.22311 0.97660 0.97967 0.84700 1.22750 1.00058 1.00422 0.96044 1.20181 0.90317 0.96188 0.85464 0.92256 1.42775 1.78108 1.10119 1.07624 1.19037 1.36481 0.95729 0.86086 0.89144 1.24659 1.01291 0.97382 0.95625 1.69693 1.51901 1.35721 1.00674 0.86603 0.78595 0.86771 0.76831 1.21028 1.21790 1.20403 0.92423 0.91403 0.93463 0.88927 0.90723 0.80121 0.79770 0.79915 0.82055 0.90230 0.90379 0.92213 0.89795 0.80603 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.02 37.16 0.34 -1.58 16 2 C -0.11 -1.63 2.46 -90.50 -0.22 -1.86 16 3 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 4 C 0.12 1.48 5.72 -3.71 -0.02 1.45 16 5 N -0.60 -7.15 2.97 -173.62 -0.51 -7.66 16 6 C 0.56 7.22 7.32 -12.33 -0.09 7.13 16 7 O -0.53 -8.29 16.37 5.32 0.09 -8.20 16 8 C -0.17 -1.89 5.08 -104.83 -0.53 -2.42 16 9 C 0.19 2.01 8.54 -17.09 -0.15 1.87 16 10 N -0.45 -5.66 10.39 -12.28 -0.13 -5.78 16 11 C 0.27 3.34 7.60 -157.60 -1.20 2.14 16 12 N -0.42 -4.61 10.55 -12.39 -0.13 -4.74 16 13 C 0.11 0.72 11.21 -17.20 -0.19 0.53 16 14 C 0.07 0.46 11.22 -17.21 -0.19 0.26 16 15 N -0.41 -4.06 10.46 -10.77 -0.11 -4.17 16 16 C 0.02 0.24 6.59 -84.78 -0.56 -0.32 16 17 C 0.03 0.34 9.77 -38.38 -0.37 -0.04 16 18 C 0.10 1.09 4.95 -3.49 -0.02 1.07 16 19 C -0.15 -2.29 5.67 -26.39 -0.15 -2.44 16 20 C 0.19 3.18 2.19 -67.88 -0.15 3.03 16 21 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 22 N -0.74 -16.17 4.22 -53.38 -0.23 -16.39 16 23 C -0.24 -6.43 10.41 -15.06 -0.16 -6.59 16 24 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 25 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 26 N -0.93 -28.43 13.97 55.49 0.78 -27.66 16 27 Si 0.88 21.49 27.73 -169.99 -4.71 16.78 16 28 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 30 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.10 7.36 -51.93 -0.38 0.72 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 1.17 7.00 -51.93 -0.36 0.81 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.18 1.43 6.69 -52.49 -0.35 1.08 16 37 H 0.19 0.35 8.06 -52.49 -0.42 -0.07 16 38 H 0.18 0.33 8.06 -52.49 -0.42 -0.09 16 39 H 0.16 1.69 8.06 -52.48 -0.42 1.27 16 40 H 0.08 0.76 8.13 -51.93 -0.42 0.34 16 41 H 0.08 0.80 4.79 -51.92 -0.25 0.55 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.36 7.92 5.37 -40.82 -0.22 7.70 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 367.46 15.07 5.54 5.54 Total: -1.00 -35.04 367.46 -8.99 -44.03 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.80 Total: 5.93 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -3.76 Total: 2.34 kcal Atomic # 7 Polarization: -66.07 SS G_CDS: -0.34 Total: -66.41 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.09 Total: -8.20 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.71 Total: 16.78 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.04 -8.99 -44.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036068120.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.241 kcal (2) G-P(sol) polarization free energy of solvation -35.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds