Wall clock time and date at job start Sat Apr 11 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.50070 * 2 1 4 4 C 1.53188 * 109.49956 * 239.93078 * 2 1 3 5 5 N 1.46928 * 108.77451 * 185.41843 * 4 2 1 6 6 C 1.34781 * 120.62784 * 233.58268 * 5 4 2 7 7 O 1.21552 * 120.00171 * 5.85363 * 6 5 4 8 8 C 1.47849 * 119.99800 * 185.84351 * 6 5 4 9 9 C 1.40598 * 120.27530 * 41.58107 * 8 6 5 10 10 N 1.30818 * 121.52030 * 179.97438 * 9 8 6 11 11 C 1.33763 * 121.79671 * 359.97438 * 10 9 8 12 12 N 1.33884 * 120.62435 * 180.27655 * 11 10 9 13 13 C 1.31331 * 119.84680 * 180.24136 * 12 11 10 14 14 C 1.39756 * 120.77899 * 359.48207 * 13 12 11 15 15 N 1.31306 * 120.55108 * 0.26421 * 14 13 12 16 16 C 1.33669 * 119.70671 * 359.97438 * 15 14 13 17 17 C 1.38905 * 120.28189 * 221.54930 * 8 6 5 18 18 C 1.46921 * 118.73966 * 53.86047 * 5 4 2 19 19 C 1.53621 * 108.54535 * 306.09230 * 18 5 4 20 20 C 1.53040 * 109.49347 * 120.09600 * 2 1 3 21 21 H 1.08998 * 109.46598 * 61.29356 * 20 2 1 22 22 N 1.46508 * 109.46192 * 301.33594 * 20 2 1 23 23 C 1.36937 * 120.00190 * 155.00009 * 22 20 2 24 24 H 1.07993 * 119.99948 * 0.02562 * 23 22 20 25 25 C 1.38807 * 119.99848 * 180.02562 * 23 22 20 26 26 N 1.31619 * 120.00055 * 179.97438 * 25 23 22 27 27 Si 1.86800 * 119.99975 * 359.97438 * 25 23 22 28 28 H 1.48507 * 109.47166 * 90.00371 * 27 25 23 29 29 H 1.48507 * 109.47248 * 209.99750 * 27 25 23 30 30 H 1.48500 * 109.47390 * 329.99933 * 27 25 23 31 31 H 1.09004 * 109.46968 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47508 * 300.07022 * 1 2 3 33 33 H 1.09006 * 109.46649 * 60.07082 * 1 2 3 34 34 H 1.08994 * 109.58884 * 65.63089 * 4 2 1 35 35 H 1.09003 * 109.58974 * 305.20322 * 4 2 1 36 36 H 1.08001 * 119.24378 * 359.95051 * 9 8 6 37 37 H 1.07998 * 119.61049 * 179.76931 * 13 12 11 38 38 H 1.08001 * 119.72847 * 180.28139 * 14 13 12 39 39 H 1.08005 * 120.99027 * 0.02562 * 17 8 6 40 40 H 1.09002 * 109.58955 * 65.92834 * 18 5 4 41 41 H 1.09007 * 109.58622 * 186.35291 * 18 5 4 42 42 H 1.08999 * 109.63508 * 294.86830 * 19 18 5 43 43 H 1.08997 * 109.43693 * 174.72252 * 19 18 5 44 44 H 0.97002 * 119.99624 * 335.00683 * 22 20 2 45 45 H 0.97000 * 120.00220 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7235 -1.2497 5 7 3.5047 -0.8289 -1.1696 6 6 4.2812 -0.3860 -2.1782 7 8 3.7811 0.2016 -3.1174 8 6 5.7415 -0.6148 -2.1422 9 6 6.2549 -1.8511 -1.7122 10 7 7.5422 -2.0800 -1.6711 11 6 8.4349 -1.1528 -2.0354 12 7 9.7472 -1.4143 -1.9893 13 6 10.6105 -0.4911 -2.3460 14 6 10.1763 0.7626 -2.7853 15 7 8.8947 1.0421 -2.8444 16 6 7.9981 0.1194 -2.4818 17 6 6.6177 0.3895 -2.5334 18 6 4.1050 -1.4319 0.0282 19 6 3.5708 -0.6954 1.2660 20 6 2.0407 -0.7234 1.2482 21 1 1.6966 -1.7576 1.2350 22 7 1.5264 -0.0536 2.4454 23 6 1.3962 -0.7501 3.6171 24 1 1.6730 -1.7931 3.6589 25 6 0.9084 -0.1156 4.7512 26 7 0.7828 -0.7852 5.8773 27 14 0.4303 1.6888 4.6791 28 1 -1.0009 1.8069 4.3005 29 1 0.6428 2.3109 6.0107 30 1 1.2685 2.3831 3.6689 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5149 0.8892 33 1 -0.3633 0.5128 -0.8907 34 1 1.7640 -0.1575 -2.1388 35 1 1.6053 -1.7213 -1.2984 36 1 5.5707 -2.6296 -1.4084 37 1 11.6683 -0.7048 -2.3037 38 1 10.9009 1.5077 -3.0788 39 1 6.2506 1.3485 -2.8680 40 1 3.8338 -2.4863 0.0816 41 1 5.1896 -1.3333 -0.0176 42 1 3.9159 0.3385 1.2543 43 1 3.9332 -1.1903 2.1670 44 1 1.2780 0.8834 2.4079 45 1 0.4416 -0.3418 6.6698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036068120.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:38 Heat of formation + Delta-G solvation = 50.938252 kcal Electronic energy + Delta-G solvation = -29245.270048 eV Core-core repulsion = 25262.859303 eV Total energy + Delta-G solvation = -3982.410745 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.90239 -41.53522 -39.55037 -38.89734 -36.38181 -36.17382 -34.61293 -33.35965 -33.09324 -32.29984 -31.52363 -28.28698 -27.14150 -26.69296 -25.94373 -24.30080 -24.06927 -23.04244 -22.12283 -21.15041 -20.30389 -19.52721 -19.14587 -18.98459 -17.60547 -17.19790 -16.82833 -16.71050 -16.37180 -16.21202 -16.02770 -15.73053 -15.32423 -15.15145 -14.88087 -14.60343 -14.51642 -14.25917 -14.00250 -13.98256 -13.61161 -13.46395 -13.13829 -12.96259 -12.89035 -12.87293 -12.81730 -12.46197 -12.16099 -12.11206 -11.92505 -11.86887 -11.75858 -11.21817 -11.17731 -10.92707 -10.61601 -10.29462 -9.94268 -9.79658 -9.26934 -7.99783 -5.31459 -1.24721 -0.93894 0.53856 1.18353 1.37545 1.38966 1.46022 1.58391 1.86915 2.36864 2.49035 2.77706 2.79386 2.84882 3.20136 3.32008 3.35825 3.50677 3.56057 3.71106 3.78294 3.92427 3.94488 4.00414 4.20160 4.23379 4.31245 4.34059 4.47142 4.54684 4.56358 4.73362 4.75465 4.78004 4.83122 4.90279 5.01296 5.15548 5.21529 5.25272 5.37887 5.43429 5.58055 5.78652 5.81270 6.16645 6.24669 6.28819 6.70318 6.85342 7.10737 7.87944 8.05315 9.21763 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015156 B = 0.002714 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.004591 B =10313.778421 C =11093.904506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 H 0.061 0.939 4 C 0.126 3.874 5 N -0.594 5.594 6 C 0.572 3.428 7 O -0.562 6.562 8 C -0.175 4.175 9 C 0.194 3.806 10 N -0.477 5.477 11 C 0.250 3.750 12 N -0.456 5.456 13 C 0.131 3.869 14 C 0.091 3.909 15 N -0.435 5.435 16 C 0.005 3.995 17 C 0.026 3.974 18 C 0.106 3.894 19 C -0.145 4.145 20 C 0.182 3.818 21 H 0.057 0.943 22 N -0.748 5.748 23 C -0.216 4.216 24 H 0.064 0.936 25 C -0.063 4.063 26 N -0.984 5.984 27 Si 0.946 3.054 28 H -0.279 1.279 29 H -0.301 1.301 30 H -0.258 1.258 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.203 0.797 37 H 0.235 0.765 38 H 0.233 0.767 39 H 0.162 0.838 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.049 0.951 43 H 0.065 0.935 44 H 0.362 0.638 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.926 1.588 -21.899 28.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.125 4.125 3 H 0.079 0.921 4 C 0.004 3.996 5 N -0.324 5.324 6 C 0.359 3.641 7 O -0.441 6.441 8 C -0.182 4.182 9 C 0.017 3.983 10 N -0.186 5.186 11 C 0.012 3.988 12 N -0.171 5.171 13 C -0.049 4.049 14 C -0.086 4.086 15 N -0.149 5.149 16 C -0.119 4.119 17 C -0.002 4.002 18 C -0.016 4.016 19 C -0.186 4.186 20 C 0.074 3.926 21 H 0.075 0.925 22 N -0.390 5.390 23 C -0.347 4.347 24 H 0.082 0.918 25 C -0.255 4.255 26 N -0.635 5.635 27 Si 0.774 3.226 28 H -0.206 1.206 29 H -0.229 1.229 30 H -0.183 1.183 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.220 0.780 37 H 0.251 0.749 38 H 0.250 0.750 39 H 0.179 0.821 40 H 0.123 0.877 41 H 0.110 0.890 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.195 0.805 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 17.789 0.829 -21.935 28.254 hybrid contribution -0.793 1.891 0.657 2.154 sum 16.996 2.720 -21.277 27.368 Atomic orbital electron populations 1.21640 0.93507 1.02583 1.01571 1.21676 0.97041 0.99481 0.94260 0.92095 1.21764 0.77554 1.02264 0.98038 1.48088 1.07446 1.59298 1.17591 1.17973 0.85586 0.78237 0.82291 1.90789 1.75071 1.42571 1.35701 1.20986 0.94444 0.97233 1.05540 1.23759 0.90934 0.94876 0.88716 1.67541 1.02536 1.32315 1.16236 1.20323 0.92655 0.89497 0.96374 1.68411 1.00386 1.34655 1.13697 1.25290 1.02680 0.88685 0.88222 1.25171 0.92585 0.98186 0.92673 1.68675 1.03858 1.31163 1.11230 1.20172 0.95455 0.93196 1.03104 1.21771 0.89600 0.99535 0.89273 1.22285 0.98300 0.98561 0.82485 1.22553 0.98452 1.00219 0.97348 1.20448 0.91372 0.95990 0.84835 0.92466 1.42815 1.78442 1.10075 1.07680 1.19013 1.33496 0.94725 0.87444 0.91822 1.25378 1.02872 1.01730 0.95495 1.69863 1.54556 1.37601 1.01527 0.85549 0.78613 0.81805 0.76603 1.20566 1.22854 1.18267 0.91942 0.93844 0.91148 0.88833 0.88617 0.78005 0.74912 0.75031 0.82084 0.87682 0.89028 0.93250 0.91631 0.80545 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.02 71.98 0.65 -2.91 16 2 C -0.10 -2.83 2.46 -10.72 -0.03 -2.86 16 3 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 4 C 0.13 2.80 5.72 86.36 0.49 3.30 16 5 N -0.59 -13.22 2.97 -821.48 -2.44 -15.66 16 6 C 0.57 14.02 7.32 86.79 0.63 14.65 16 7 O -0.56 -17.14 16.37 -3.88 -0.06 -17.20 16 8 C -0.17 -3.83 5.08 -20.00 -0.10 -3.94 16 9 C 0.19 3.88 8.54 85.42 0.73 4.61 16 10 N -0.48 -11.67 10.39 -192.75 -2.00 -13.68 16 11 C 0.25 6.00 7.60 134.96 1.03 7.03 16 12 N -0.46 -9.32 10.55 -193.11 -2.04 -11.35 16 13 C 0.13 1.23 11.21 85.13 0.95 2.19 16 14 C 0.09 0.81 11.22 85.14 0.96 1.76 16 15 N -0.43 -7.90 10.46 -187.99 -1.97 -9.86 16 16 C 0.01 0.12 6.59 40.34 0.27 0.39 16 17 C 0.03 0.58 9.77 23.05 0.23 0.80 16 18 C 0.11 2.21 4.95 86.51 0.43 2.64 16 19 C -0.14 -4.28 5.67 30.82 0.17 -4.10 16 20 C 0.18 5.99 2.19 45.02 0.10 6.09 16 21 H 0.06 1.94 8.08 -2.39 -0.02 1.92 16 22 N -0.75 -32.33 4.22 -322.80 -1.36 -33.69 16 23 C -0.22 -11.57 10.41 84.03 0.87 -10.70 16 24 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 25 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 26 N -0.98 -61.94 13.97 21.65 0.30 -61.63 16 27 Si 0.95 45.00 27.73 68.60 1.90 46.90 16 28 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 29 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 30 H -0.26 -11.22 6.52 99.48 0.65 -10.57 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.04 1.36 7.36 -2.39 -0.02 1.34 16 33 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.09 2.16 7.00 -2.39 -0.02 2.15 16 35 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.20 2.87 6.69 -2.91 -0.02 2.85 16 37 H 0.23 -0.36 8.06 -2.91 -0.02 -0.38 16 38 H 0.23 -0.44 8.06 -2.91 -0.02 -0.47 16 39 H 0.16 3.44 8.06 -2.91 -0.02 3.41 16 40 H 0.11 1.73 8.13 -2.39 -0.02 1.71 16 41 H 0.09 1.75 4.79 -2.38 -0.01 1.73 16 42 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.36 15.56 5.37 -92.71 -0.50 15.07 16 45 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -79.99 367.46 0.67 -79.32 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.48 Total: 21.08 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 7.85 Total: 15.79 kcal Atomic # 7 Polarization: -136.38 SS G_CDS: -9.50 Total: -145.88 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.06 Total: -17.20 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.90 Total: 46.90 kcal Total: -79.99 0.67 -79.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036068120.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.254 kcal (2) G-P(sol) polarization free energy of solvation -79.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds