Wall clock time and date at job start Sat Apr 11 2020 06:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.49737 * 2 1 4 4 C 1.53188 * 109.50290 * 239.93528 * 2 1 3 5 5 N 1.46922 * 108.77868 * 185.41386 * 4 2 1 6 6 C 1.34780 * 120.62794 * 233.58438 * 5 4 2 7 7 O 1.21488 * 119.99900 * 5.65302 * 6 5 4 8 8 C 1.48432 * 120.00039 * 185.65809 * 6 5 4 9 9 N 1.33495 * 119.22210 * 35.75018 * 8 6 5 10 10 N 1.28916 * 122.02540 * 180.02562 * 9 8 6 11 11 C 1.33806 * 119.74383 * 359.97438 * 10 9 8 12 12 C 1.40339 * 121.78220 * 180.02562 * 11 10 9 13 13 C 1.36184 * 119.62785 * 179.69847 * 12 11 10 14 14 C 1.39450 * 121.06813 * 0.56630 * 13 12 11 15 15 C 1.36125 * 121.01358 * 359.42930 * 14 13 12 16 16 C 1.40508 * 119.56377 * 0.27600 * 15 14 13 17 17 N 1.32059 * 119.21867 * 215.74898 * 8 6 5 18 18 C 1.46917 * 118.74003 * 53.85850 * 5 4 2 19 19 C 1.53621 * 108.54549 * 306.09381 * 18 5 4 20 20 C 1.53042 * 109.49768 * 120.09297 * 2 1 3 21 21 H 1.08996 * 109.46473 * 301.33840 * 20 2 1 22 22 N 1.46498 * 109.45779 * 61.30134 * 20 2 1 23 23 C 1.36944 * 119.99978 * 204.99602 * 22 20 2 24 24 H 1.08007 * 119.99649 * 0.02562 * 23 22 20 25 25 C 1.38812 * 120.00071 * 179.97438 * 23 22 20 26 26 N 1.31615 * 119.99621 * 179.97438 * 25 23 22 27 27 Si 1.86793 * 119.99998 * 0.02562 * 25 23 22 28 28 H 1.48498 * 109.47457 * 89.99820 * 27 25 23 29 29 H 1.48501 * 109.46967 * 209.99917 * 27 25 23 30 30 H 1.48503 * 109.47096 * 329.99699 * 27 25 23 31 31 H 1.09002 * 109.46732 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47243 * 300.06228 * 1 2 3 33 33 H 1.08993 * 109.47533 * 60.06613 * 1 2 3 34 34 H 1.09002 * 109.58450 * 65.61533 * 4 2 1 35 35 H 1.09004 * 109.58402 * 305.20463 * 4 2 1 36 36 H 1.08009 * 120.18665 * 359.97438 * 12 11 10 37 37 H 1.08005 * 119.46679 * 180.29150 * 13 12 11 38 38 H 1.08000 * 119.49235 * 179.70684 * 14 13 12 39 39 H 1.08005 * 120.21902 * 180.25667 * 15 14 13 40 40 H 1.09003 * 109.58933 * 65.93095 * 18 5 4 41 41 H 1.09004 * 109.58793 * 186.35296 * 18 5 4 42 42 H 1.08997 * 109.63222 * 294.86372 * 19 18 5 43 43 H 1.09002 * 109.43313 * 174.72578 * 19 18 5 44 44 H 0.97000 * 120.00369 * 24.99714 * 22 20 2 45 45 H 0.97004 * 119.99626 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7234 -1.2497 5 7 3.5046 -0.8287 -1.1697 6 6 4.2811 -0.3857 -2.1783 7 8 3.7807 0.1985 -3.1187 8 6 5.7477 -0.6117 -2.1403 9 7 6.2190 -1.7456 -1.6167 10 7 7.4819 -1.9974 -1.5558 11 6 8.3602 -1.1052 -2.0281 12 6 9.7438 -1.3355 -1.9840 13 6 10.5983 -0.3998 -2.4830 14 6 10.1218 0.7920 -3.0281 15 6 8.7868 1.0513 -3.0885 16 6 7.8739 0.1072 -2.5891 17 7 6.5553 0.3138 -2.6252 18 6 4.1050 -1.4317 0.0280 19 6 3.5709 -0.6953 1.2659 20 6 2.0408 -0.7234 1.2482 21 1 1.6582 -0.2250 2.1389 22 7 1.5784 -2.1133 1.2303 23 6 1.4482 -2.8069 2.4039 24 1 1.6861 -2.3289 3.3428 25 6 1.0096 -4.1237 2.3870 26 7 0.8850 -4.7904 3.5149 27 14 0.5975 -4.9501 0.7632 28 1 1.8127 -5.6088 0.2205 29 1 -0.4619 -5.9677 0.9806 30 1 0.1140 -3.9306 -0.2023 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5148 0.8895 33 1 -0.3634 0.5128 -0.8905 34 1 1.7637 -0.1574 -2.1389 35 1 1.6053 -1.7212 -1.2985 36 1 10.1287 -2.2516 -1.5607 37 1 11.6624 -0.5817 -2.4520 38 1 10.8225 1.5185 -3.4124 39 1 8.4317 1.9768 -3.5172 40 1 3.8339 -2.4861 0.0814 41 1 5.1896 -1.3330 -0.0178 42 1 3.9159 0.3386 1.2542 43 1 3.9335 -1.1902 2.1668 44 1 1.3644 -2.5425 0.3871 45 1 0.5782 -5.7105 3.5031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036113256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:02 Heat of formation + Delta-G solvation = 96.139296 kcal Electronic energy + Delta-G solvation = -29797.940304 eV Core-core repulsion = 25817.489623 eV Total energy + Delta-G solvation = -3980.450681 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.42136 -40.18946 -38.51961 -37.85766 -35.61964 -34.55165 -33.07818 -32.25665 -31.53773 -31.37605 -29.76384 -27.52240 -26.31048 -25.88969 -24.75877 -23.18385 -23.02298 -21.72229 -21.24322 -19.71883 -19.20655 -18.40984 -17.86423 -17.18326 -16.78866 -16.32472 -15.89985 -15.48403 -15.13122 -14.80659 -14.65232 -14.45299 -14.06303 -13.64466 -13.59318 -13.39662 -13.15499 -13.01178 -12.72839 -12.56819 -12.50120 -12.38052 -12.29086 -11.89922 -11.68256 -11.58426 -11.41168 -10.99201 -10.94259 -10.69656 -10.54537 -10.24786 -10.19925 -9.89651 -9.86609 -9.67636 -9.54420 -9.23755 -8.94040 -8.47784 -7.27456 -5.77154 -3.12627 -0.69143 -0.25743 1.18481 1.91967 2.44241 2.62755 3.18987 3.37072 3.40484 3.43365 3.45383 3.46866 3.64877 4.00172 4.18445 4.41987 4.53840 4.58905 4.64528 4.96359 5.05090 5.11394 5.21452 5.23571 5.33830 5.36966 5.42030 5.54794 5.60270 5.62719 5.65939 5.71293 5.86817 5.93137 5.96903 6.06952 6.21234 6.27418 6.34589 6.37953 6.49627 6.57150 6.65264 6.74913 6.83915 7.33469 7.81146 7.98702 7.99571 8.41749 9.19727 9.92417 10.11888 11.41230 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015603 B = 0.003172 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.048205 B = 8824.117856 C = 9735.349229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 H 0.073 0.927 4 C 0.119 3.881 5 N -0.579 5.579 6 C 0.590 3.410 7 O -0.515 6.515 8 C 0.228 3.772 9 N -0.220 5.220 10 N -0.141 5.141 11 C 0.017 3.983 12 C -0.064 4.064 13 C -0.093 4.093 14 C -0.072 4.072 15 C -0.088 4.088 16 C 0.132 3.868 17 N -0.403 5.403 18 C 0.114 3.886 19 C -0.151 4.151 20 C 0.185 3.815 21 H 0.062 0.938 22 N -0.743 5.743 23 C -0.240 4.240 24 H 0.090 0.910 25 C 0.007 3.993 26 N -0.933 5.933 27 Si 0.877 3.123 28 H -0.283 1.283 29 H -0.291 1.291 30 H -0.277 1.277 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.152 0.848 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.151 0.849 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.050 0.950 43 H 0.082 0.918 44 H 0.360 0.640 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.072 12.483 -12.904 26.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.132 4.132 3 H 0.092 0.908 4 C -0.003 4.003 5 N -0.311 5.311 6 C 0.371 3.629 7 O -0.389 6.389 8 C -0.045 4.045 9 N -0.081 5.081 10 N -0.004 5.004 11 C -0.115 4.115 12 C -0.086 4.086 13 C -0.114 4.114 14 C -0.095 4.095 15 C -0.107 4.107 16 C -0.007 4.007 17 N -0.125 5.125 18 C -0.009 4.009 19 C -0.192 4.192 20 C 0.075 3.925 21 H 0.080 0.920 22 N -0.387 5.387 23 C -0.370 4.370 24 H 0.108 0.892 25 C -0.188 4.188 26 N -0.581 5.581 27 Si 0.707 3.293 28 H -0.209 1.209 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.170 0.830 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.169 0.831 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.069 0.931 43 H 0.101 0.899 44 H 0.194 0.806 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 18.005 12.144 -12.853 25.236 hybrid contribution 0.394 -0.314 -1.302 1.396 sum 18.398 11.829 -14.155 26.054 Atomic orbital electron populations 1.21675 0.93886 1.02973 1.01038 1.21772 0.96739 0.99371 0.95303 0.90825 1.21811 0.77179 1.01722 0.99584 1.47979 1.07213 1.58113 1.17745 1.16994 0.82491 0.79823 0.83584 1.90793 1.72748 1.40954 1.34371 1.24433 0.97643 0.88899 0.93507 1.74316 1.06906 1.16895 1.10031 1.74596 0.96114 1.22348 1.07318 1.21031 0.97355 0.93849 0.99298 1.20850 0.89118 1.00709 0.97930 1.21239 1.01062 0.93029 0.96060 1.21256 0.95306 0.97044 0.95862 1.20913 0.91863 0.98973 0.98968 1.19739 0.91016 0.94064 0.95876 1.69115 1.02540 1.29370 1.11495 1.22110 0.97009 0.99004 0.82741 1.22643 1.00101 0.98821 0.97680 1.20184 0.90799 0.86252 0.95251 0.91989 1.42837 1.80528 1.09381 1.05927 1.19039 1.37612 0.94096 0.86273 0.89172 1.24628 1.01487 0.96691 0.96041 1.69691 1.53103 1.10823 1.24475 0.86675 0.78253 0.79602 0.84721 1.20930 1.21782 1.20368 0.91515 0.92181 0.93433 0.89003 0.90666 0.83030 0.83703 0.83688 0.83139 0.89120 0.90461 0.93127 0.89928 0.80573 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.05 37.16 0.34 -1.71 16 2 C -0.11 -1.74 2.67 -90.50 -0.24 -1.98 16 3 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 4 C 0.12 1.91 5.43 -3.71 -0.02 1.89 16 5 N -0.58 -9.67 2.97 -173.40 -0.51 -10.18 16 6 C 0.59 10.29 7.59 -12.06 -0.09 10.20 16 7 O -0.52 -9.96 16.46 5.38 0.09 -9.87 16 8 C 0.23 3.70 6.80 -156.56 -1.06 2.64 16 9 N -0.22 -3.52 8.63 32.10 0.28 -3.24 16 10 N -0.14 -1.99 11.68 32.28 0.38 -1.62 16 11 C 0.02 0.20 6.68 -84.71 -0.57 -0.37 16 12 C -0.06 -0.46 10.00 -39.53 -0.40 -0.86 16 13 C -0.09 -0.41 9.95 -39.87 -0.40 -0.81 16 14 C -0.07 -0.33 9.95 -39.89 -0.40 -0.73 16 15 C -0.09 -0.68 10.01 -39.49 -0.40 -1.07 16 16 C 0.13 1.56 6.61 -84.77 -0.56 1.00 16 17 N -0.40 -6.05 10.38 -8.99 -0.09 -6.14 16 18 C 0.11 1.92 5.58 -3.49 -0.02 1.90 16 19 C -0.15 -2.54 5.80 -26.38 -0.15 -2.69 16 20 C 0.19 3.34 2.53 -67.89 -0.17 3.17 16 21 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 22 N -0.74 -16.28 3.44 -53.38 -0.18 -16.46 16 23 C -0.24 -6.40 10.41 -15.06 -0.16 -6.56 16 24 H 0.09 2.59 8.06 -52.48 -0.42 2.16 16 25 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 26 N -0.93 -28.71 13.97 55.49 0.78 -27.94 16 27 Si 0.88 21.74 27.74 -169.99 -4.71 17.02 16 28 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 30 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 31 H 0.07 1.13 7.53 -51.93 -0.39 0.73 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.09 1.43 7.00 -51.93 -0.36 1.07 16 35 H 0.08 1.27 6.64 -51.93 -0.34 0.93 16 36 H 0.15 0.82 8.06 -52.48 -0.42 0.39 16 37 H 0.15 0.17 8.06 -52.48 -0.42 -0.25 16 38 H 0.15 0.18 8.06 -52.49 -0.42 -0.24 16 39 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 40 H 0.09 1.71 7.74 -51.93 -0.40 1.31 16 41 H 0.08 1.26 4.95 -51.93 -0.26 1.00 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.36 7.92 3.78 -40.82 -0.15 7.77 16 45 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 365.57 15.07 5.51 5.51 Total: -1.00 -33.75 365.57 -8.60 -42.35 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.73 Total: 6.44 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -4.39 Total: 4.13 kcal Atomic # 7 Polarization: -66.21 SS G_CDS: 0.64 Total: -65.57 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.02 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.75 -8.60 -42.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036113256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.485 kcal (2) G-P(sol) polarization free energy of solvation -33.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds