Wall clock time and date at job start Sat Apr 11 2020 06:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.52365 * 2 1 4 4 C 1.53187 * 109.50114 * 120.08047 * 2 1 3 5 5 N 1.46929 * 108.77810 * 174.58477 * 4 2 1 6 6 C 1.34773 * 120.62956 * 126.41856 * 5 4 2 7 7 O 1.21485 * 119.99957 * 175.84916 * 6 5 4 8 8 C 1.48436 * 119.99936 * 355.83703 * 6 5 4 9 9 N 1.33488 * 119.21692 * 44.85062 * 8 6 5 10 10 N 1.28923 * 122.02247 * 179.69544 * 9 8 6 11 11 C 1.33815 * 119.74151 * 0.56467 * 10 9 8 12 12 C 1.40336 * 121.78068 * 179.74754 * 11 10 9 13 13 C 1.36186 * 119.62878 * 179.97438 * 12 11 10 14 14 C 1.39448 * 121.06775 * 359.97438 * 13 12 11 15 15 C 1.36126 * 121.01397 * 0.04375 * 14 13 12 16 16 C 1.40511 * 119.56399 * 359.95640 * 15 14 13 17 17 N 1.32057 * 119.22206 * 225.11206 * 8 6 5 18 18 C 1.46922 * 118.73750 * 306.39863 * 5 4 2 19 19 C 1.53189 * 108.77846 * 53.60754 * 18 5 4 20 20 C 1.53034 * 109.49841 * 239.92642 * 2 1 3 21 21 H 1.09000 * 109.46358 * 58.65908 * 20 2 1 22 22 N 1.46508 * 109.45859 * 298.70292 * 20 2 1 23 23 C 1.36929 * 120.00081 * 154.93040 * 22 20 2 24 24 H 1.08001 * 120.00141 * 0.02562 * 23 22 20 25 25 C 1.38814 * 119.99896 * 179.97438 * 23 22 20 26 26 N 1.31618 * 119.99975 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 119.99985 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.46993 * 90.00172 * 27 25 23 29 29 H 1.48505 * 109.47014 * 209.99816 * 27 25 23 30 30 H 1.48492 * 109.47259 * 330.00155 * 27 25 23 31 31 H 1.08995 * 109.47021 * 180.08196 * 1 2 3 32 32 H 1.08998 * 109.46652 * 300.07828 * 1 2 3 33 33 H 1.08997 * 109.47326 * 60.07629 * 1 2 3 34 34 H 1.09010 * 109.58406 * 54.80303 * 4 2 1 35 35 H 1.08993 * 109.70651 * 294.44645 * 4 2 1 36 36 H 1.08001 * 120.18385 * 359.97438 * 12 11 10 37 37 H 1.07996 * 119.46504 * 179.97438 * 13 12 11 38 38 H 1.08003 * 119.48978 * 180.02562 * 14 13 12 39 39 H 1.08000 * 120.22054 * 179.97438 * 15 14 13 40 40 H 1.09000 * 109.58792 * 293.81618 * 18 5 4 41 41 H 1.08999 * 109.58552 * 173.39233 * 18 5 4 42 42 H 1.08999 * 109.50124 * 185.41390 * 19 18 5 43 43 H 1.08997 * 109.52660 * 65.32706 * 19 18 5 44 44 H 0.96997 * 119.99289 * 334.92730 * 22 20 2 45 45 H 0.97001 * 120.00069 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0414 -0.7238 1.2495 5 7 3.5047 -0.8291 1.1695 6 6 4.2812 -0.3865 2.1782 7 8 5.4846 -0.5472 2.1340 8 6 3.6661 0.2977 3.3431 9 7 2.5663 -0.2187 3.8959 10 7 1.9911 0.3274 4.9122 11 6 2.4932 1.4527 5.4339 12 6 1.8987 2.0859 6.5362 13 6 2.4471 3.2296 7.0321 14 6 3.5928 3.7842 6.4625 15 6 4.1976 3.1993 5.3924 16 6 3.6610 2.0181 4.8528 17 7 4.2169 1.4056 3.8047 18 6 4.1053 -1.4265 -0.0309 19 6 3.5709 -0.6948 -1.2661 20 6 2.0408 -0.7229 -1.2484 21 1 1.6582 -0.2243 -2.1389 22 7 1.5783 -2.1130 -1.2310 23 6 1.4468 -2.8055 -2.4049 24 1 1.6844 -2.3272 -3.3436 25 6 1.0091 -4.1227 -2.3883 26 7 0.7210 -4.7061 -1.2442 27 14 0.8303 -5.0678 -3.9897 28 1 2.1079 -5.7571 -4.3029 29 1 -0.2539 -6.0732 -3.8527 30 1 0.4950 -4.1245 -5.0863 31 1 -0.3633 -1.0276 0.0015 32 1 -0.3632 0.5151 0.8893 33 1 -0.3634 0.5126 -0.8906 34 1 1.6054 -1.7217 1.2979 35 1 1.7638 -0.1601 2.1402 36 1 1.0113 1.6685 6.9887 37 1 1.9872 3.7149 7.8802 38 1 4.0065 4.6918 6.8767 39 1 5.0842 3.6400 4.9611 40 1 3.8376 -2.4817 -0.0870 41 1 5.1896 -1.3244 0.0135 42 1 3.9334 -1.1894 -2.1672 43 1 3.9159 0.3391 -1.2547 44 1 1.3654 -2.5426 -0.3878 45 1 0.4148 -5.6265 -1.2326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036113257.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:13 Heat of formation + Delta-G solvation = 91.101179 kcal Electronic energy + Delta-G solvation = -29771.720509 eV Core-core repulsion = 25791.051360 eV Total energy + Delta-G solvation = -3980.669150 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.38425 -40.06146 -38.44843 -37.77418 -35.58337 -34.33031 -32.67335 -32.62184 -31.62131 -31.19600 -29.28918 -26.94119 -26.27901 -26.08453 -24.64428 -23.46856 -23.00252 -21.89006 -20.83589 -19.66505 -19.19343 -18.32872 -17.37172 -17.21368 -16.73854 -16.28710 -15.75442 -15.46693 -14.98879 -14.76083 -14.49513 -14.34750 -13.99304 -13.79939 -13.41410 -13.27625 -12.97889 -12.95198 -12.72216 -12.54588 -12.47029 -12.30497 -12.13818 -11.88886 -11.58823 -11.42277 -11.14081 -10.88885 -10.77359 -10.54477 -10.40402 -10.27889 -10.14444 -10.01037 -9.75979 -9.63125 -9.50848 -9.20565 -8.91263 -8.33819 -6.96202 -5.76645 -3.05358 -0.65667 -0.20274 1.21716 1.99622 2.49106 2.67638 3.25392 3.43899 3.47254 3.49005 3.49595 3.50898 3.71720 4.04821 4.21078 4.44985 4.57842 4.59889 4.67274 5.00501 5.10028 5.23066 5.27955 5.37232 5.40927 5.44532 5.58737 5.65327 5.68166 5.74718 5.77562 5.88135 5.96905 5.99505 6.12434 6.23633 6.31852 6.38720 6.43839 6.50048 6.56887 6.71931 6.76677 6.93044 6.94280 7.47229 7.70956 7.86960 8.09110 8.41485 9.53243 10.09048 10.44371 11.45631 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021694 B = 0.002749 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.385315 B =10184.470304 C =10610.547182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 H 0.063 0.937 4 C 0.110 3.890 5 N -0.575 5.575 6 C 0.589 3.411 7 O -0.517 6.517 8 C 0.233 3.767 9 N -0.223 5.223 10 N -0.141 5.141 11 C 0.015 3.985 12 C -0.064 4.064 13 C -0.094 4.094 14 C -0.072 4.072 15 C -0.088 4.088 16 C 0.133 3.867 17 N -0.407 5.407 18 C 0.121 3.879 19 C -0.150 4.150 20 C 0.179 3.821 21 H 0.053 0.947 22 N -0.718 5.718 23 C -0.238 4.238 24 H 0.070 0.930 25 C -0.011 4.011 26 N -0.931 5.931 27 Si 0.904 3.096 28 H -0.291 1.291 29 H -0.293 1.293 30 H -0.283 1.283 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.151 0.849 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.049 0.951 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.692 19.330 16.831 25.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.132 4.132 3 H 0.081 0.919 4 C -0.013 4.013 5 N -0.306 5.306 6 C 0.371 3.629 7 O -0.390 6.390 8 C -0.040 4.040 9 N -0.084 5.084 10 N -0.004 5.004 11 C -0.117 4.117 12 C -0.086 4.086 13 C -0.115 4.115 14 C -0.095 4.095 15 C -0.108 4.108 16 C -0.005 4.005 17 N -0.129 5.129 18 C 0.000 4.000 19 C -0.191 4.191 20 C 0.069 3.931 21 H 0.071 0.929 22 N -0.361 5.361 23 C -0.369 4.369 24 H 0.088 0.912 25 C -0.207 4.207 26 N -0.579 5.579 27 Si 0.736 3.264 28 H -0.218 1.218 29 H -0.219 1.219 30 H -0.209 1.209 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.169 0.831 37 H 0.162 0.838 38 H 0.163 0.837 39 H 0.168 0.832 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.067 0.933 44 H 0.220 0.780 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.060 18.320 16.125 24.597 hybrid contribution 0.100 -0.035 -0.218 0.242 sum 3.159 18.285 15.907 24.441 Atomic orbital electron populations 1.21658 0.93925 1.03467 1.00349 1.21765 0.96778 0.98687 0.95920 0.91872 1.22134 0.78063 1.02860 0.98244 1.47985 1.07620 1.57630 1.17367 1.16986 0.85956 0.79125 0.80879 1.90797 1.13321 1.57079 1.77822 1.24522 0.90768 0.91281 0.97401 1.74269 1.06087 1.24725 1.03284 1.74574 1.20805 1.04021 1.00998 1.21012 0.95959 0.95915 0.98838 1.20834 0.99950 0.94669 0.93121 1.21226 0.95403 0.95070 0.99816 1.21249 0.94460 0.99554 0.94213 1.20912 1.00847 0.92774 0.96227 1.19734 0.92498 0.96072 0.92233 1.69120 1.28157 1.06725 1.08893 1.21748 0.97863 0.98582 0.81790 1.22555 1.00234 0.98816 0.97487 1.20216 0.90870 0.87448 0.94612 0.92924 1.42473 1.78968 1.07624 1.07009 1.19202 1.37292 0.93905 0.86522 0.91233 1.24707 1.02257 0.97166 0.96589 1.69646 1.51604 1.13026 1.23621 0.86238 0.77274 0.79825 0.83101 1.21821 1.21903 1.20888 0.90693 0.94014 0.92645 0.89185 0.90011 0.83086 0.83753 0.83724 0.83163 0.89119 0.89953 0.90305 0.93260 0.78043 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.05 37.16 0.34 -1.82 16 2 C -0.11 -1.83 2.67 -90.50 -0.24 -2.07 16 3 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 4 C 0.11 1.86 5.02 -3.71 -0.02 1.84 16 5 N -0.57 -10.20 2.97 -173.66 -0.52 -10.71 16 6 C 0.59 10.87 7.56 -12.06 -0.09 10.77 16 7 O -0.52 -10.68 16.52 5.38 0.09 -10.59 16 8 C 0.23 3.89 6.73 -156.57 -1.05 2.83 16 9 N -0.22 -3.58 8.77 32.10 0.28 -3.29 16 10 N -0.14 -1.98 11.68 32.28 0.38 -1.60 16 11 C 0.02 0.18 6.68 -84.71 -0.57 -0.39 16 12 C -0.06 -0.46 10.00 -39.53 -0.40 -0.85 16 13 C -0.09 -0.42 9.95 -39.87 -0.40 -0.82 16 14 C -0.07 -0.34 9.95 -39.89 -0.40 -0.73 16 15 C -0.09 -0.69 10.01 -39.48 -0.40 -1.09 16 16 C 0.13 1.60 6.61 -84.77 -0.56 1.04 16 17 N -0.41 -6.24 10.43 -8.99 -0.09 -6.33 16 18 C 0.12 2.20 6.16 -3.71 -0.02 2.18 16 19 C -0.15 -2.63 5.78 -26.61 -0.15 -2.79 16 20 C 0.18 3.37 2.53 -67.89 -0.17 3.20 16 21 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 22 N -0.72 -16.58 3.64 -53.38 -0.19 -16.78 16 23 C -0.24 -6.23 9.93 -15.06 -0.15 -6.38 16 24 H 0.07 1.79 7.83 -52.49 -0.41 1.37 16 25 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 26 N -0.93 -27.17 13.06 55.49 0.72 -26.44 16 27 Si 0.90 21.96 29.55 -169.99 -5.02 16.94 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 30 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 31 H 0.07 1.38 7.54 -51.93 -0.39 0.99 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 1.69 6.64 -51.92 -0.34 1.34 16 35 H 0.08 1.32 4.74 -51.93 -0.25 1.08 16 36 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 37 H 0.14 0.17 8.06 -52.49 -0.42 -0.26 16 38 H 0.14 0.19 8.06 -52.48 -0.42 -0.23 16 39 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.09 1.86 7.74 -51.93 -0.40 1.46 16 41 H 0.08 1.47 7.03 -51.93 -0.36 1.11 16 42 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.38 9.49 5.93 -40.82 -0.24 9.25 16 45 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 LS Contribution 368.86 15.07 5.56 5.56 Total: -1.00 -32.56 368.86 -8.93 -41.49 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -5.76 Total: 7.24 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: -4.37 Total: 4.53 kcal Atomic # 7 Polarization: -65.74 SS G_CDS: 0.58 Total: -65.16 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.56 -8.93 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036113257.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.588 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds