Wall clock time and date at job start Sat Apr 11 2020 06:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.50016 * 2 1 4 4 C 1.53617 * 109.45994 * 120.21307 * 2 1 3 5 5 N 1.46931 * 108.54353 * 174.73983 * 4 2 1 6 6 C 1.34774 * 120.63354 * 126.36606 * 5 4 2 7 7 O 1.21479 * 119.99924 * 175.57667 * 6 5 4 8 8 C 1.48435 * 119.99726 * 355.58148 * 6 5 4 9 9 N 1.33491 * 119.21928 * 44.96195 * 8 6 5 10 10 N 1.28921 * 122.02049 * 179.69775 * 9 8 6 11 11 C 1.33821 * 119.74514 * 0.56429 * 10 9 8 12 12 C 1.40331 * 121.78164 * 179.74378 * 11 10 9 13 13 C 1.36183 * 119.62797 * 179.97438 * 12 11 10 14 14 C 1.39452 * 121.06982 * 359.97438 * 13 12 11 15 15 C 1.36137 * 121.01020 * 0.02562 * 14 13 12 16 16 C 1.40507 * 119.56276 * 359.97438 * 15 14 13 17 17 N 1.32056 * 119.21750 * 225.23067 * 8 6 5 18 18 C 1.46925 * 118.73618 * 306.09301 * 5 4 2 19 19 C 1.53200 * 108.77735 * 53.85985 * 18 5 4 20 20 C 1.53040 * 109.31026 * 305.36467 * 19 18 5 21 21 H 1.08997 * 109.46049 * 301.34223 * 20 19 18 22 22 N 1.46498 * 109.45918 * 181.38604 * 20 19 18 23 23 C 1.36936 * 120.00515 * 84.99941 * 22 20 19 24 24 H 1.08004 * 119.99358 * 359.97438 * 23 22 20 25 25 C 1.38807 * 120.00313 * 180.02562 * 23 22 20 26 26 N 1.31618 * 119.99817 * 359.97438 * 25 23 22 27 27 Si 1.86794 * 119.99893 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47503 * 59.99818 * 27 25 23 29 29 H 1.48500 * 109.47321 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.47181 * 299.99628 * 27 25 23 31 31 H 1.08998 * 109.47359 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46884 * 300.06233 * 1 2 3 33 33 H 1.08994 * 109.47413 * 60.05804 * 1 2 3 34 34 H 1.09002 * 109.74098 * 55.00363 * 4 2 1 35 35 H 1.08996 * 109.66734 * 294.42768 * 4 2 1 36 36 H 1.08008 * 120.18890 * 0.02562 * 12 11 10 37 37 H 1.07996 * 119.47067 * 180.02562 * 13 12 11 38 38 H 1.07997 * 119.49483 * 179.97438 * 14 13 12 39 39 H 1.07996 * 120.21485 * 179.97438 * 15 14 13 40 40 H 1.09003 * 109.58850 * 173.64806 * 18 5 4 41 41 H 1.09004 * 109.58916 * 294.07720 * 18 5 4 42 42 H 1.09001 * 109.49481 * 65.31498 * 19 18 5 43 43 H 1.08997 * 109.49676 * 185.41366 * 19 18 5 44 44 H 0.97010 * 119.99847 * 264.99834 * 22 20 19 45 45 H 0.97003 * 119.99535 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0418 -0.7289 1.2517 5 7 3.5054 -0.8284 1.1688 6 6 4.2820 -0.3855 2.1773 7 8 5.4853 -0.5459 2.1328 8 6 3.6670 0.2983 3.3424 9 7 2.5688 -0.2199 3.8970 10 7 1.9938 0.3258 4.9136 11 6 2.4943 1.4526 5.4338 12 6 1.8999 2.0855 6.5363 13 6 2.4465 3.2306 7.0306 14 6 3.5905 3.7870 6.4593 15 6 4.1954 3.2022 5.3891 16 6 3.6605 2.0195 4.8511 17 7 4.2161 1.4076 3.8024 18 6 4.1059 -1.4255 -0.0318 19 6 3.5707 -0.6938 -1.2669 20 6 2.0407 -0.7227 -1.2487 21 1 1.6971 -1.7570 -1.2357 22 7 1.5257 -0.0526 -2.4454 23 6 1.3942 -0.7491 -3.6170 24 1 1.6706 -1.7923 -3.6590 25 6 0.9068 -0.1140 -4.7510 26 7 0.5705 1.1575 -4.6999 27 14 0.7268 -1.0643 -6.3490 28 1 -0.2058 -2.2020 -6.1461 29 1 0.1886 -0.1655 -7.4016 30 1 2.0538 -1.5811 -6.7698 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5148 0.8895 33 1 -0.3634 0.5129 -0.8904 34 1 1.6096 -1.7285 1.2981 35 1 1.7638 -0.1665 2.1430 36 1 1.0142 1.6663 6.9907 37 1 1.9872 3.7153 7.8794 38 1 4.0024 4.6962 6.8716 39 1 5.0807 3.6444 4.9565 40 1 5.1902 -1.3229 0.0123 41 1 3.8386 -2.4807 -0.0880 42 1 3.9154 0.3402 -1.2549 43 1 3.9333 -1.1882 -2.1681 44 1 1.2778 0.8845 -2.4077 45 1 0.2295 1.6011 -5.4923 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036113258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:18 Heat of formation + Delta-G solvation = 88.118278 kcal Electronic energy + Delta-G solvation = -29356.788813 eV Core-core repulsion = 25375.990314 eV Total energy + Delta-G solvation = -3980.798498 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.46209 -40.15091 -38.48307 -37.76671 -35.66394 -34.66799 -32.74409 -32.65742 -31.68963 -31.26137 -29.47966 -26.96792 -26.38039 -26.11711 -24.77524 -23.11060 -22.91812 -21.79355 -20.83881 -19.74393 -19.65299 -18.86542 -17.53611 -16.99013 -16.86898 -16.36749 -15.91490 -15.52907 -14.98578 -14.89242 -14.78701 -14.22448 -14.01312 -13.80317 -13.46696 -13.29288 -13.05589 -13.00592 -12.79391 -12.53492 -12.48169 -12.40480 -12.26343 -11.94856 -11.64885 -11.54446 -11.26744 -10.91050 -10.82222 -10.62577 -10.43448 -10.34577 -10.22888 -10.05085 -9.74783 -9.71946 -9.58469 -9.25739 -8.90043 -8.59598 -6.96972 -5.77599 -3.06292 -0.72288 -0.27907 1.16037 1.90932 2.34025 2.57460 3.17148 3.38607 3.41335 3.43569 3.48433 3.48922 3.59666 3.95951 4.16535 4.39464 4.50337 4.57640 4.62366 4.94291 5.01647 5.15745 5.20336 5.30136 5.34033 5.40250 5.43452 5.55582 5.61438 5.64467 5.69147 5.76855 5.91090 5.94618 6.04331 6.10641 6.28560 6.34835 6.37653 6.41199 6.48431 6.61416 6.81619 6.86897 7.04496 7.26255 7.68693 7.75694 7.93478 8.40598 9.52016 10.08867 10.43837 11.44896 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019071 B = 0.002562 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.876018 B =10926.565016 C =11465.886539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 H 0.067 0.933 4 C 0.111 3.889 5 N -0.581 5.581 6 C 0.593 3.407 7 O -0.513 6.513 8 C 0.231 3.769 9 N -0.227 5.227 10 N -0.142 5.142 11 C 0.017 3.983 12 C -0.065 4.065 13 C -0.092 4.092 14 C -0.071 4.071 15 C -0.087 4.087 16 C 0.134 3.866 17 N -0.404 5.404 18 C 0.114 3.886 19 C -0.152 4.152 20 C 0.184 3.816 21 H 0.051 0.949 22 N -0.720 5.720 23 C -0.238 4.238 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.933 5.933 27 Si 0.906 3.094 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.286 1.286 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.152 0.848 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.152 0.848 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.225 4.108 26.151 26.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.133 4.133 3 H 0.085 0.915 4 C -0.013 4.013 5 N -0.313 5.313 6 C 0.374 3.626 7 O -0.386 6.386 8 C -0.042 4.042 9 N -0.088 5.088 10 N -0.005 5.005 11 C -0.115 4.115 12 C -0.087 4.087 13 C -0.113 4.113 14 C -0.094 4.094 15 C -0.107 4.107 16 C -0.004 4.004 17 N -0.126 5.126 18 C -0.008 4.008 19 C -0.193 4.193 20 C 0.073 3.927 21 H 0.069 0.931 22 N -0.360 5.360 23 C -0.369 4.369 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.581 5.581 27 Si 0.737 3.263 28 H -0.213 1.213 29 H -0.218 1.218 30 H -0.213 1.213 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.169 0.831 37 H 0.163 0.837 38 H 0.164 0.836 39 H 0.169 0.831 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.217 0.783 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.599 3.067 25.458 25.894 hybrid contribution 0.099 0.645 -0.597 0.884 sum 3.698 3.712 24.861 25.408 Atomic orbital electron populations 1.21652 0.93839 1.02046 1.01756 1.21881 0.96829 0.99838 0.94730 0.91477 1.22293 0.77834 1.02112 0.99026 1.48005 1.07679 1.58360 1.17272 1.16984 0.85916 0.78872 0.80807 1.90805 1.13293 1.56666 1.77818 1.24424 0.90914 0.91436 0.97420 1.74182 1.06096 1.25104 1.03466 1.74524 1.20658 1.04236 1.01050 1.20985 0.95918 0.95828 0.98807 1.20825 0.99961 0.94753 0.93174 1.21246 0.95314 0.94955 0.99763 1.21274 0.94393 0.99548 0.94156 1.20938 1.00900 0.92685 0.96142 1.19733 0.92495 0.96084 0.92103 1.69119 1.28193 1.06550 1.08774 1.21884 0.99086 0.96979 0.82806 1.22718 1.00117 1.00612 0.95845 1.20209 0.90429 0.95806 0.86226 0.93073 1.42393 1.76474 1.11379 1.05779 1.19178 1.35916 0.94109 0.87695 0.91203 1.24726 1.02074 0.96017 0.98056 1.69651 1.49979 1.09496 1.29013 0.86288 0.77760 0.78699 0.83549 1.21291 1.21785 1.21298 0.92694 0.94067 0.90612 0.90009 0.89579 0.83066 0.83678 0.83622 0.83054 0.89264 0.90829 0.92141 0.90118 0.78260 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.03 37.16 0.34 -1.83 16 2 C -0.11 -1.86 2.47 -90.27 -0.22 -2.08 16 3 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.11 1.61 5.35 -3.49 -0.02 1.59 16 5 N -0.58 -9.04 2.97 -173.39 -0.51 -9.56 16 6 C 0.59 9.97 7.56 -12.06 -0.09 9.88 16 7 O -0.51 -9.81 16.52 5.38 0.09 -9.72 16 8 C 0.23 3.58 6.73 -156.57 -1.05 2.52 16 9 N -0.23 -3.27 8.77 32.10 0.28 -2.99 16 10 N -0.14 -1.81 11.68 32.28 0.38 -1.43 16 11 C 0.02 0.18 6.68 -84.71 -0.57 -0.38 16 12 C -0.07 -0.43 10.00 -39.53 -0.40 -0.82 16 13 C -0.09 -0.37 9.95 -39.87 -0.40 -0.77 16 14 C -0.07 -0.32 9.95 -39.88 -0.40 -0.71 16 15 C -0.09 -0.67 10.01 -39.48 -0.40 -1.06 16 16 C 0.13 1.56 6.61 -84.77 -0.56 0.99 16 17 N -0.40 -5.98 10.43 -9.00 -0.09 -6.07 16 18 C 0.11 1.74 6.42 -3.71 -0.02 1.72 16 19 C -0.15 -2.69 5.66 -26.61 -0.15 -2.84 16 20 C 0.18 3.50 2.19 -67.89 -0.15 3.35 16 21 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 22 N -0.72 -17.31 4.41 -53.39 -0.24 -17.54 16 23 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 24 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 25 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 26 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 27 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 30 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 1.43 7.36 -51.93 -0.38 1.05 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.24 4.74 -51.93 -0.25 0.99 16 36 H 0.15 0.68 8.06 -52.48 -0.42 0.25 16 37 H 0.15 0.12 8.06 -52.49 -0.42 -0.31 16 38 H 0.15 0.18 8.06 -52.49 -0.42 -0.25 16 39 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.09 1.38 7.03 -51.93 -0.36 1.01 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.38 9.95 7.50 -40.82 -0.31 9.64 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 372.82 15.07 5.62 5.62 Total: -1.00 -33.46 372.82 -9.02 -42.48 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -5.92 Total: 6.55 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -4.33 Total: 2.56 kcal Atomic # 7 Polarization: -65.15 SS G_CDS: 0.54 Total: -64.62 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.46 -9.02 -42.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036113258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.598 kcal (2) G-P(sol) polarization free energy of solvation -33.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds