Wall clock time and date at job start Sat Apr 11 2020 06:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.49700 * 2 1 4 4 C 1.53194 * 109.49848 * 239.93159 * 2 1 3 5 5 N 1.46922 * 108.89288 * 185.34093 * 4 2 1 6 6 C 1.34780 * 120.63294 * 233.68157 * 5 4 2 7 7 O 1.21483 * 119.99653 * 355.83519 * 6 5 4 8 8 C 1.48433 * 120.00234 * 175.83852 * 6 5 4 9 9 N 1.33494 * 119.22236 * 44.37420 * 8 6 5 10 10 N 1.28917 * 122.02845 * 179.97438 * 9 8 6 11 11 C 1.33812 * 119.74298 * 359.97438 * 10 9 8 12 12 C 1.40338 * 121.78030 * 180.02562 * 11 10 9 13 13 C 1.36190 * 119.62298 * 180.02562 * 12 11 10 14 14 C 1.39451 * 121.07086 * 359.95797 * 13 12 11 15 15 C 1.36138 * 121.01386 * 0.02562 * 14 13 12 16 16 C 1.40509 * 119.56232 * 0.02562 * 15 14 13 17 17 N 1.32058 * 119.22399 * 224.10591 * 8 6 5 18 18 C 1.47208 * 118.55569 * 53.54226 * 5 4 2 19 19 C 1.53194 * 108.85380 * 306.47231 * 18 5 4 20 20 C 1.53035 * 109.49854 * 120.09208 * 2 1 3 21 21 H 1.09003 * 109.45810 * 61.30961 * 20 2 1 22 22 N 1.46499 * 109.46094 * 301.33715 * 20 2 1 23 23 C 1.36943 * 120.00022 * 155.00068 * 22 20 2 24 24 H 1.07994 * 119.99855 * 359.97438 * 23 22 20 25 25 C 1.38811 * 119.99985 * 180.02562 * 23 22 20 26 26 N 1.31619 * 119.99995 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00145 * 179.97438 * 25 23 22 28 28 H 1.48509 * 109.46896 * 59.99788 * 27 25 23 29 29 H 1.48496 * 109.47513 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.47303 * 300.00244 * 27 25 23 31 31 H 1.08993 * 109.47415 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47389 * 300.06997 * 1 2 3 33 33 H 1.09003 * 109.47155 * 60.06564 * 1 2 3 34 34 H 1.08999 * 109.58460 * 305.20539 * 4 2 1 35 35 H 1.08999 * 109.58151 * 65.48496 * 4 2 1 36 36 H 1.07999 * 120.19052 * 359.96681 * 12 11 10 37 37 H 1.08000 * 119.46324 * 179.97438 * 13 12 11 38 38 H 1.08000 * 119.49081 * 179.97438 * 14 13 12 39 39 H 1.07996 * 120.21848 * 179.97438 * 15 14 13 40 40 H 1.09002 * 109.53594 * 186.67476 * 18 5 4 41 41 H 1.08990 * 109.67808 * 66.36549 * 18 5 4 42 42 H 1.09004 * 109.49957 * 294.70446 * 19 18 5 43 43 H 1.08995 * 109.52520 * 174.61692 * 19 18 5 44 44 H 0.96997 * 119.99892 * 334.99884 * 22 20 2 45 45 H 0.96999 * 120.00118 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2498 5 7 3.5047 -0.8287 -1.1732 6 6 4.2790 -0.3843 -2.1830 7 8 3.7668 0.0394 -3.1999 8 6 5.7573 -0.4124 -2.0526 9 7 6.3468 -1.5005 -1.5519 10 7 7.6260 -1.5834 -1.4152 11 6 8.4008 -0.5560 -1.7822 12 6 9.7975 -0.6004 -1.6528 13 6 10.5438 0.4711 -2.0398 14 6 9.9430 1.6147 -2.5649 15 6 8.5914 1.6951 -2.7061 16 6 7.7879 0.6101 -2.3168 17 7 6.4588 0.6374 -2.4395 18 6 4.1053 -1.4267 0.0304 19 6 3.5709 -0.6952 1.2659 20 6 2.0408 -0.7233 1.2482 21 1 1.6969 -1.7576 1.2348 22 7 1.5265 -0.0534 2.4452 23 6 1.3964 -0.7500 3.6171 24 1 1.6726 -1.7932 3.6587 25 6 0.9087 -0.1154 4.7512 26 7 0.5707 1.1557 4.7001 27 14 0.7306 -1.0656 6.3495 28 1 2.0585 -1.5808 6.7697 29 1 0.1929 -0.1671 7.4025 30 1 -0.2007 -2.2046 6.1472 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5149 0.8894 33 1 -0.3633 0.5128 -0.8906 34 1 1.6052 -1.7213 -1.2984 35 1 1.7615 -0.1587 -2.1390 36 1 10.2777 -1.4788 -1.2477 37 1 11.6185 0.4343 -1.9387 38 1 10.5594 2.4498 -2.8633 39 1 8.1396 2.5872 -3.1139 40 1 5.1896 -1.3246 -0.0140 41 1 3.8397 -2.4822 0.0874 42 1 3.9159 0.3387 1.2541 43 1 3.9334 -1.1896 2.1671 44 1 1.2782 0.8835 2.4078 45 1 0.2295 1.5990 5.4925 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036113259.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:23 Heat of formation + Delta-G solvation = 87.898913 kcal Electronic energy + Delta-G solvation = -29265.811019 eV Core-core repulsion = 25285.003009 eV Total energy + Delta-G solvation = -3980.808010 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.44397 -40.14360 -38.48311 -37.72594 -35.64643 -34.71315 -33.09569 -32.25784 -31.52079 -31.38612 -29.37137 -27.48923 -26.33247 -25.74925 -24.74962 -23.09297 -22.87129 -21.70911 -21.08671 -19.74810 -19.60152 -18.84374 -17.38591 -17.08330 -16.83919 -16.35093 -15.89586 -15.51714 -14.99243 -14.86886 -14.78976 -14.25179 -13.97276 -13.79932 -13.45500 -13.31865 -13.09113 -13.04047 -12.75084 -12.52391 -12.48965 -12.35552 -12.23464 -11.91386 -11.65736 -11.55879 -11.21028 -10.92940 -10.82328 -10.67720 -10.43480 -10.30479 -10.23475 -9.96310 -9.73620 -9.71250 -9.63654 -9.24382 -8.90243 -8.60061 -6.97355 -5.77966 -3.06674 -0.70805 -0.26471 1.17508 1.91752 2.34269 2.58785 3.18460 3.40145 3.42610 3.43134 3.47735 3.48334 3.60632 3.97359 4.17875 4.40803 4.51932 4.57154 4.63695 4.95683 5.08483 5.21051 5.21286 5.24794 5.34150 5.38763 5.41805 5.52980 5.65463 5.66805 5.68704 5.77243 5.93628 5.96028 6.05194 6.15331 6.29238 6.32578 6.40731 6.42052 6.50449 6.59065 6.79620 6.90284 7.03440 7.26115 7.68268 7.76860 7.93928 8.40229 9.51631 10.08671 10.43720 11.44448 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013886 B = 0.002760 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.934410 B =10142.088875 C =11263.543317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.111 4.111 3 H 0.070 0.930 4 C 0.121 3.879 5 N -0.581 5.581 6 C 0.594 3.406 7 O -0.514 6.514 8 C 0.231 3.769 9 N -0.227 5.227 10 N -0.142 5.142 11 C 0.017 3.983 12 C -0.065 4.065 13 C -0.092 4.092 14 C -0.072 4.072 15 C -0.087 4.087 16 C 0.134 3.866 17 N -0.405 5.405 18 C 0.104 3.896 19 C -0.153 4.153 20 C 0.184 3.816 21 H 0.051 0.949 22 N -0.720 5.720 23 C -0.238 4.238 24 H 0.070 0.930 25 C -0.012 4.012 26 N -0.933 5.933 27 Si 0.906 3.094 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.286 1.286 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.152 0.848 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.152 0.848 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.079 0.921 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.465 -1.414 -16.112 25.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.131 4.131 3 H 0.089 0.911 4 C -0.001 4.001 5 N -0.313 5.313 6 C 0.375 3.625 7 O -0.387 6.387 8 C -0.042 4.042 9 N -0.088 5.088 10 N -0.005 5.005 11 C -0.115 4.115 12 C -0.087 4.087 13 C -0.113 4.113 14 C -0.094 4.094 15 C -0.107 4.107 16 C -0.004 4.004 17 N -0.127 5.127 18 C -0.019 4.019 19 C -0.195 4.195 20 C 0.073 3.927 21 H 0.069 0.931 22 N -0.360 5.360 23 C -0.370 4.370 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.581 5.581 27 Si 0.737 3.263 28 H -0.213 1.213 29 H -0.218 1.218 30 H -0.213 1.213 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.169 0.831 37 H 0.163 0.837 38 H 0.164 0.836 39 H 0.169 0.831 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.097 0.903 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 18.448 -1.983 -16.281 24.685 hybrid contribution 0.516 0.498 0.866 1.125 sum 18.964 -1.485 -15.415 24.484 Atomic orbital electron populations 1.21651 0.93741 1.01935 1.01972 1.21766 0.96830 1.00082 0.94415 0.91122 1.21871 0.76815 1.01604 0.99761 1.48053 1.07400 1.58237 1.17641 1.16965 0.82547 0.78791 0.84184 1.90803 1.72599 1.46560 1.28738 1.24399 0.97965 0.88131 0.93676 1.74188 1.03727 1.21648 1.09210 1.74525 0.97982 1.21031 1.06963 1.20991 0.97402 0.93406 0.99729 1.20829 0.89687 1.00109 0.98081 1.21247 1.01346 0.92447 0.96254 1.21271 0.94420 0.98317 0.95381 1.20935 0.93048 0.97453 0.99230 1.19728 0.90324 0.94784 0.95598 1.69103 1.05645 1.26363 1.11540 1.22231 0.98143 0.97868 0.83675 1.22746 1.00547 1.00224 0.95951 1.20208 0.90163 0.95879 0.86418 0.93071 1.42399 1.76421 1.11431 1.05742 1.19180 1.35963 0.94113 0.87697 0.91218 1.24729 1.02048 0.96022 0.98054 1.69649 1.49890 1.09530 1.29013 0.86295 0.77752 0.78724 0.83568 1.21326 1.21774 1.21259 0.92883 0.90626 0.93703 0.90622 0.88994 0.83066 0.83681 0.83628 0.83059 0.89928 0.90213 0.92517 0.90272 0.78211 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.02 37.16 0.34 -1.83 16 2 C -0.11 -1.84 2.46 -90.50 -0.22 -2.06 16 3 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 4 C 0.12 1.79 5.70 -3.71 -0.02 1.77 16 5 N -0.58 -9.04 2.98 -173.44 -0.52 -9.56 16 6 C 0.59 9.98 7.57 -12.06 -0.09 9.89 16 7 O -0.51 -9.73 16.52 5.38 0.09 -9.64 16 8 C 0.23 3.63 6.75 -156.56 -1.06 2.57 16 9 N -0.23 -3.34 8.76 32.10 0.28 -3.06 16 10 N -0.14 -1.87 11.68 32.28 0.38 -1.50 16 11 C 0.02 0.19 6.68 -84.71 -0.57 -0.37 16 12 C -0.07 -0.45 10.00 -39.53 -0.40 -0.84 16 13 C -0.09 -0.40 9.95 -39.87 -0.40 -0.80 16 14 C -0.07 -0.33 9.95 -39.88 -0.40 -0.73 16 15 C -0.09 -0.69 10.01 -39.48 -0.40 -1.08 16 16 C 0.13 1.59 6.61 -84.78 -0.56 1.03 16 17 N -0.40 -6.06 10.43 -9.00 -0.09 -6.15 16 18 C 0.10 1.56 6.04 -3.56 -0.02 1.53 16 19 C -0.15 -2.70 5.66 -26.61 -0.15 -2.85 16 20 C 0.18 3.50 2.19 -67.89 -0.15 3.35 16 21 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 22 N -0.72 -17.29 4.41 -53.38 -0.24 -17.52 16 23 C -0.24 -6.39 9.93 -15.06 -0.15 -6.53 16 24 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 25 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 26 N -0.93 -27.71 13.06 55.49 0.72 -26.98 16 27 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 30 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.43 7.36 -51.93 -0.38 1.04 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 1.37 7.03 -51.93 -0.36 1.00 16 36 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.15 0.15 8.06 -52.49 -0.42 -0.27 16 38 H 0.15 0.20 8.06 -52.49 -0.42 -0.22 16 39 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.08 1.24 4.76 -51.93 -0.25 0.99 16 41 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 44 H 0.38 9.96 7.50 -40.82 -0.31 9.65 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 372.83 15.07 5.62 5.62 Total: -1.00 -33.40 372.83 -9.03 -42.43 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.92 Total: 6.71 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -4.33 Total: 2.59 kcal Atomic # 7 Polarization: -65.31 SS G_CDS: 0.54 Total: -64.77 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.40 -9.03 -42.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036113259.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.325 kcal (2) G-P(sol) polarization free energy of solvation -33.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds