Wall clock time and date at job start Sat Apr 11 2020 06:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.58595 * 2 1 4 4 C 1.53193 * 109.58557 * 120.28207 * 2 1 3 5 5 C 1.53039 * 109.31168 * 174.56868 * 4 2 1 6 6 H 1.08995 * 109.46250 * 58.64591 * 5 4 2 7 7 N 1.46508 * 109.45733 * 178.61914 * 5 4 2 8 8 C 1.36936 * 119.99645 * 205.02721 * 7 5 4 9 9 H 1.07998 * 120.00426 * 359.72169 * 8 7 5 10 10 C 1.38811 * 119.99735 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00129 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99828 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47029 * 60.00276 * 12 10 8 14 14 H 1.48500 * 109.47249 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47193 * 300.00052 * 12 10 8 16 16 C 1.53038 * 109.52577 * 298.62352 * 5 4 2 17 17 C 1.53197 * 109.30879 * 61.39310 * 16 5 4 18 18 N 1.46921 * 108.76194 * 305.33739 * 17 16 5 19 19 C 1.34779 * 120.63321 * 233.59590 * 18 17 16 20 20 O 1.21555 * 119.99999 * 186.29577 * 19 18 17 21 21 C 1.47847 * 119.99731 * 6.29173 * 19 18 17 22 22 C 1.40600 * 120.28079 * 33.47097 * 21 19 18 23 23 N 1.30811 * 121.52203 * 179.97438 * 22 21 19 24 24 C 1.33758 * 121.79572 * 359.97438 * 23 22 21 25 25 N 1.33899 * 120.61923 * 180.02562 * 24 23 22 26 26 C 1.31336 * 119.84421 * 179.97438 * 25 24 23 27 27 C 1.39754 * 120.77688 * 0.02754 * 26 25 24 28 28 N 1.31309 * 120.55925 * 359.97438 * 27 26 25 29 29 C 1.33667 * 119.70274 * 359.96130 * 28 27 26 30 30 C 1.38905 * 120.27810 * 213.19561 * 21 19 18 31 31 H 1.08994 * 109.47312 * 292.56117 * 1 2 3 32 32 H 1.09004 * 109.46915 * 52.55915 * 1 2 3 33 33 H 1.08998 * 109.47055 * 172.54940 * 1 2 3 34 34 H 1.08998 * 109.49523 * 54.61722 * 4 2 1 35 35 H 1.09001 * 109.49874 * 294.51712 * 4 2 1 36 36 H 0.96993 * 120.00381 * 25.02058 * 7 5 4 37 37 H 0.96993 * 119.99705 * 179.97438 * 11 10 8 38 38 H 1.09002 * 109.49701 * 181.32509 * 16 5 4 39 39 H 1.08993 * 109.50191 * 301.42711 * 16 5 4 40 40 H 1.09005 * 109.58209 * 185.56257 * 17 16 5 41 41 H 1.08994 * 109.72039 * 65.20111 * 17 16 5 42 42 H 1.08001 * 119.23489 * 0.02562 * 22 21 19 43 43 H 1.07999 * 119.60913 * 180.02562 * 26 25 24 44 44 H 1.08002 * 119.72326 * 179.97438 * 27 26 25 45 45 H 1.08005 * 120.99786 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5678 -0.8432 1.1730 6 1 4.0044 0.1529 1.1021 7 7 4.0653 -1.5096 2.3792 8 6 5.3487 -1.2893 2.8030 9 1 5.9955 -0.6279 2.2457 10 6 5.8200 -1.9203 3.9461 11 7 5.0335 -2.7306 4.6223 12 14 7.5709 -1.6203 4.5239 13 1 7.7573 -0.1749 4.8093 14 1 7.8264 -2.4059 5.7580 15 1 8.5212 -2.0422 3.4637 16 6 3.9600 -1.6610 -0.0597 17 6 3.4686 -0.9435 -1.3209 18 7 2.0255 -0.6990 -1.1936 19 6 1.1723 -1.1078 -2.1536 20 8 -0.0022 -0.8007 -2.0938 21 6 1.6652 -1.9297 -3.2794 22 6 2.7092 -2.8504 -3.0812 23 7 3.1637 -3.5901 -4.0597 24 6 2.6602 -3.5099 -5.2963 25 7 3.1431 -4.2788 -6.2805 26 6 2.6371 -4.1879 -7.4890 27 6 1.5974 -3.2954 -7.7637 28 7 1.1063 -2.5304 -6.8161 29 6 1.6049 -2.6068 -5.5783 30 6 1.0970 -1.8028 -4.5405 31 1 -0.3633 0.3943 0.9489 32 1 -0.3633 0.6248 -0.8160 33 1 -0.3633 -1.0190 -0.1333 34 1 1.6049 -1.7246 1.2921 35 1 1.7638 -0.1654 2.1372 36 1 3.4858 -2.1067 2.8775 37 1 5.3630 -3.1717 5.4208 38 1 5.0446 -1.7628 -0.0987 39 1 3.5032 -2.6488 -0.0015 40 1 3.6577 -1.5683 -2.1939 41 1 3.9918 0.0063 -1.4312 42 1 3.1453 -2.9499 -2.0982 43 1 3.0292 -4.8102 -8.2799 44 1 1.1942 -3.2343 -8.7638 45 1 0.2907 -1.1070 -4.7199 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044633288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:29 Heat of formation + Delta-G solvation = 98.827020 kcal Electronic energy + Delta-G solvation = -29376.377238 eV Core-core repulsion = 25396.043106 eV Total energy + Delta-G solvation = -3980.334132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.16439 -40.76102 -38.56687 -37.57232 -35.44432 -34.66267 -33.38840 -32.24943 -32.02173 -31.12150 -29.39209 -27.23762 -26.60142 -25.46989 -24.36450 -23.43052 -23.02920 -22.22596 -20.78625 -20.11503 -19.18394 -18.44788 -17.92839 -17.14271 -16.60825 -16.31687 -15.93738 -15.84716 -15.39387 -14.86062 -14.75689 -14.37679 -14.06644 -13.84504 -13.62354 -13.60569 -13.51416 -13.10835 -12.75027 -12.70658 -12.34602 -12.17562 -12.10658 -12.04300 -11.69413 -11.45028 -11.06744 -10.93652 -10.88228 -10.84890 -10.52475 -10.31482 -9.95192 -9.79176 -9.74294 -9.57130 -9.38225 -9.07514 -8.95115 -8.59811 -7.03734 -5.81729 -3.11518 -0.50316 -0.21134 1.31646 1.96731 2.67022 2.79395 3.08802 3.40761 3.45575 3.46570 3.50447 3.54658 3.59424 4.07822 4.16089 4.22831 4.43329 4.53042 4.57995 4.80396 4.83603 4.97490 5.07113 5.17526 5.22833 5.37427 5.38883 5.43711 5.46746 5.54297 5.71939 5.79542 5.87227 5.92942 6.04736 6.17678 6.23802 6.33100 6.37676 6.45015 6.48291 6.62915 6.79483 6.94283 6.97533 7.29173 7.47382 7.63973 7.96791 8.36250 9.47743 10.03959 10.38461 11.40529 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014863 B = 0.002733 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.367685 B =10241.930754 C =11768.449308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.148 3.852 3 H 0.075 0.925 4 C -0.136 4.136 5 C 0.180 3.820 6 H 0.050 0.950 7 N -0.722 5.722 8 C -0.243 4.243 9 H 0.070 0.930 10 C -0.011 4.011 11 N -0.931 5.931 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.155 4.155 17 C 0.082 3.918 18 N -0.592 5.592 19 C 0.564 3.436 20 O -0.524 6.524 21 C -0.172 4.172 22 C 0.184 3.816 23 N -0.454 5.454 24 C 0.271 3.729 25 N -0.416 5.416 26 C 0.111 3.889 27 C 0.071 3.929 28 N -0.406 5.406 29 C 0.018 3.982 30 C 0.031 3.969 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.193 0.807 43 H 0.185 0.815 44 H 0.183 0.817 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.434 1.820 -23.865 25.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.046 3.954 3 H 0.093 0.907 4 C -0.175 4.175 5 C 0.069 3.931 6 H 0.068 0.932 7 N -0.363 5.363 8 C -0.374 4.374 9 H 0.088 0.912 10 C -0.207 4.207 11 N -0.579 5.579 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.212 1.212 16 C -0.197 4.197 17 C -0.041 4.041 18 N -0.324 5.324 19 C 0.350 3.650 20 O -0.402 6.402 21 C -0.179 4.179 22 C 0.007 3.993 23 N -0.163 5.163 24 C 0.031 3.969 25 N -0.131 5.131 26 C -0.068 4.068 27 C -0.106 4.106 28 N -0.121 5.121 29 C -0.108 4.108 30 C 0.003 3.997 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.218 0.782 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.210 0.790 43 H 0.202 0.798 44 H 0.200 0.800 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.170 1.479 -23.441 24.868 hybrid contribution 0.382 0.302 0.270 0.557 sum -7.788 1.781 -23.172 24.510 Atomic orbital electron populations 1.22192 0.92727 1.03675 1.00946 1.21382 0.95475 0.95299 0.83244 0.90667 1.22327 0.97607 1.01131 0.96442 1.20141 0.90868 0.95050 0.86993 0.93249 1.42413 1.13077 1.54277 1.26489 1.19169 0.89133 1.22585 1.06500 0.91188 1.24751 0.98146 0.99684 0.98158 1.69647 1.35536 1.33275 1.19456 0.86289 0.84563 0.77475 0.77964 1.21257 1.21705 1.21220 1.22769 1.02278 1.00048 0.94565 1.22536 0.79424 1.01816 1.00329 1.48129 1.07510 1.56764 1.19983 1.17839 0.85820 0.79730 0.81573 1.90858 1.16562 1.56618 1.76119 1.21310 0.99706 1.01245 0.95667 1.23923 0.89239 0.87239 0.98893 1.67605 1.27892 1.22539 0.98234 1.20156 0.91709 0.92513 0.92476 1.68365 1.25519 1.19640 0.99592 1.24347 0.92581 0.95734 0.94173 1.24229 0.94291 0.92166 0.99888 1.68600 1.24597 1.19713 0.99148 1.20183 0.97719 0.99312 0.93592 1.21687 0.95303 0.93874 0.88822 0.93288 0.90870 0.91616 0.91583 0.90273 0.78189 0.93385 0.90022 0.91843 0.89404 0.90648 0.79040 0.79834 0.79983 0.81957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 7.62 37.16 0.28 -1.51 16 2 C 0.15 1.94 3.48 -67.60 -0.24 1.70 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 4 C -0.14 -2.07 4.84 -26.61 -0.13 -2.20 16 5 C 0.18 3.18 2.73 -67.89 -0.19 3.00 16 6 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 7 N -0.72 -16.89 5.12 -53.38 -0.27 -17.17 16 8 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 9 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 10 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 11 N -0.93 -27.39 13.06 55.49 0.72 -26.67 16 12 Si 0.91 21.78 29.55 -169.99 -5.02 16.75 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 16 C -0.16 -2.35 5.32 -26.61 -0.14 -2.49 16 17 C 0.08 0.97 5.53 -3.71 -0.02 0.95 16 18 N -0.59 -7.45 2.97 -166.32 -0.49 -7.94 16 19 C 0.56 7.35 7.21 -12.33 -0.09 7.26 16 20 O -0.52 -7.83 12.41 5.32 0.07 -7.76 16 21 C -0.17 -2.03 5.45 -104.83 -0.57 -2.60 16 22 C 0.18 2.20 8.55 -17.10 -0.15 2.05 16 23 N -0.45 -6.20 10.39 -12.27 -0.13 -6.32 16 24 C 0.27 3.50 7.60 -157.59 -1.20 2.30 16 25 N -0.42 -4.81 10.55 -12.39 -0.13 -4.94 16 26 C 0.11 0.75 11.21 -17.20 -0.19 0.55 16 27 C 0.07 0.44 11.22 -17.21 -0.19 0.25 16 28 N -0.41 -4.02 10.46 -10.77 -0.11 -4.14 16 29 C 0.02 0.21 6.59 -84.78 -0.56 -0.35 16 30 C 0.03 0.35 9.71 -38.38 -0.37 -0.03 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.99 6.68 -51.93 -0.35 0.64 16 33 H 0.06 0.95 6.83 -51.93 -0.35 0.59 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.38 9.73 7.80 -40.82 -0.32 9.41 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.06 0.99 7.61 -51.93 -0.40 0.59 16 40 H 0.09 0.94 3.52 -51.93 -0.18 0.75 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.19 2.14 4.97 -52.49 -0.26 1.88 16 43 H 0.18 0.40 8.06 -52.49 -0.42 -0.03 16 44 H 0.18 0.32 8.06 -52.49 -0.42 -0.10 16 45 H 0.16 1.65 8.01 -52.48 -0.42 1.23 16 LS Contribution 362.92 15.07 5.47 5.47 Total: -1.00 -33.43 362.92 -9.52 -42.95 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -5.63 Total: 7.81 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -4.00 Total: 1.96 kcal Atomic # 7 Polarization: -66.77 SS G_CDS: -0.41 Total: -67.18 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.07 Total: -7.76 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.43 -9.52 -42.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044633288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.777 kcal (2) G-P(sol) polarization free energy of solvation -33.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds