Wall clock time and date at job start Sat Apr 11 2020 06:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.57937 * 2 1 4 4 C 1.53192 * 109.58757 * 120.27614 * 2 1 3 5 5 C 1.53037 * 109.31259 * 174.42403 * 4 2 1 6 6 H 1.08999 * 109.45939 * 178.63041 * 5 4 2 7 7 N 1.46494 * 109.45844 * 58.65735 * 5 4 2 8 8 C 1.36941 * 119.99839 * 154.99614 * 7 5 4 9 9 H 1.08001 * 119.99731 * 359.72988 * 8 7 5 10 10 C 1.38815 * 120.00211 * 179.72237 * 8 7 5 11 11 N 1.31617 * 119.99637 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00108 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46917 * 60.00443 * 12 10 8 14 14 H 1.48494 * 109.46855 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47168 * 300.00435 * 12 10 8 16 16 C 1.53042 * 109.53931 * 298.63820 * 5 4 2 17 17 C 1.53195 * 109.30996 * 61.36382 * 16 5 4 18 18 N 1.46918 * 109.58812 * 239.56977 * 2 1 3 19 19 C 1.34778 * 120.62947 * 6.58446 * 18 2 1 20 20 O 1.21549 * 120.00507 * 6.24813 * 19 18 2 21 21 C 1.47853 * 119.99735 * 186.24978 * 19 18 2 22 22 C 1.40599 * 120.27492 * 33.50220 * 21 19 18 23 23 N 1.30819 * 121.51153 * 179.68413 * 22 21 19 24 24 C 1.33759 * 121.80092 * 0.59718 * 23 22 21 25 25 N 1.33884 * 120.61453 * 179.69935 * 24 23 22 26 26 C 1.31326 * 119.85010 * 180.02562 * 25 24 23 27 27 C 1.39761 * 120.77247 * 359.95124 * 26 25 24 28 28 N 1.31313 * 120.55370 * 0.02579 * 27 26 25 29 29 C 1.33662 * 119.70693 * 359.97438 * 28 27 26 30 30 C 1.38908 * 120.27639 * 213.76867 * 21 19 18 31 31 H 1.08998 * 109.47247 * 292.56050 * 1 2 3 32 32 H 1.09003 * 109.47175 * 52.56441 * 1 2 3 33 33 H 1.09004 * 109.46606 * 172.56006 * 1 2 3 34 34 H 1.09001 * 109.48976 * 54.47463 * 4 2 1 35 35 H 1.08998 * 109.50019 * 294.38176 * 4 2 1 36 36 H 0.97000 * 120.00435 * 334.72984 * 7 5 4 37 37 H 0.97003 * 119.99644 * 179.97438 * 11 10 8 38 38 H 1.08992 * 109.49885 * 181.31815 * 16 5 4 39 39 H 1.09000 * 109.49762 * 301.41849 * 16 5 4 40 40 H 1.09007 * 109.58110 * 185.57864 * 17 16 5 41 41 H 1.08997 * 109.70301 * 65.22508 * 17 16 5 42 42 H 1.08000 * 119.24302 * 359.97438 * 22 21 19 43 43 H 1.07995 * 119.61898 * 179.97438 * 26 25 24 44 44 H 1.07998 * 119.72362 * 180.02562 * 27 26 25 45 45 H 1.07996 * 120.99767 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7277 1.2464 5 6 3.5675 -0.8463 1.1713 6 1 3.9378 -1.3421 2.0686 7 7 4.1569 0.4913 1.0743 8 6 5.4413 0.7059 1.4982 9 1 6.0181 -0.1100 1.9079 10 6 6.0019 1.9721 1.4010 11 7 5.2987 2.9665 0.9019 12 14 7.7541 2.2647 1.9785 13 1 8.6813 1.4015 1.2036 14 1 8.1128 3.6903 1.7690 15 1 7.8610 1.9348 3.4225 16 6 3.9570 -1.6656 -0.0612 17 6 3.4651 -0.9485 -1.3224 18 7 2.0226 -0.7011 -1.1935 19 6 1.1674 -1.1097 -2.1517 20 8 -0.0067 -0.8012 -2.0903 21 6 1.6574 -1.9333 -3.2776 22 6 2.7001 -2.8555 -3.0799 23 7 3.1482 -3.6007 -4.0573 24 6 2.6476 -3.5162 -5.2948 25 7 3.1283 -4.2862 -6.2789 26 6 2.6259 -4.1905 -7.4885 27 6 1.5909 -3.2926 -7.7639 28 7 1.1018 -2.5267 -6.8161 29 6 1.5977 -2.6071 -5.5775 30 6 1.0953 -1.7984 -4.5406 31 1 -0.3633 0.3943 0.9490 32 1 -0.3634 0.6247 -0.8160 33 1 -0.3633 -1.0191 -0.1331 34 1 1.6030 -1.7235 1.2935 35 1 1.7660 -0.1640 2.1371 36 1 3.6389 1.2242 0.7063 37 1 5.6903 3.8514 0.8344 38 1 5.0412 -1.7695 -0.1013 39 1 3.4984 -2.6527 -0.0018 40 1 3.6519 -1.5745 -2.1950 41 1 3.9900 0.0001 -1.4341 42 1 3.1380 -2.9544 -2.0976 43 1 3.0168 -4.8132 -8.2796 44 1 1.1901 -3.2281 -8.7647 45 1 0.2959 -1.0951 -4.7214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044633290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:40 Heat of formation + Delta-G solvation = 101.470431 kcal Electronic energy + Delta-G solvation = -29845.243154 eV Core-core repulsion = 25865.023649 eV Total energy + Delta-G solvation = -3980.219505 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.08516 -40.65329 -38.51196 -37.57279 -35.37222 -34.37020 -33.24769 -32.16704 -32.00326 -31.01364 -29.19450 -27.24252 -26.51522 -25.40415 -24.20944 -23.54309 -23.32436 -22.09528 -21.01009 -19.73760 -18.74206 -18.33150 -17.67081 -17.27833 -16.48112 -16.16742 -15.85270 -15.75765 -15.35963 -14.95461 -14.40367 -14.16467 -14.05013 -13.93312 -13.65364 -13.52559 -13.43678 -13.03968 -12.74048 -12.56711 -12.24948 -12.10744 -12.10464 -11.96709 -11.52841 -11.24379 -11.06085 -10.90970 -10.85014 -10.71905 -10.49370 -10.32976 -10.04193 -9.70519 -9.66100 -9.47469 -9.28011 -9.00805 -8.94300 -8.32231 -7.05310 -5.83814 -3.13304 -0.42171 -0.13462 1.40003 2.05400 2.79965 2.96455 3.16224 3.39578 3.44881 3.45527 3.59204 3.62765 3.67355 4.17862 4.23815 4.31962 4.51355 4.53361 4.64303 4.87866 4.98769 5.11419 5.21974 5.29042 5.38535 5.44098 5.51369 5.53493 5.60828 5.64476 5.79610 5.90499 5.95599 6.03078 6.07942 6.22565 6.31086 6.40577 6.47686 6.54954 6.64272 6.68281 6.75578 6.93231 7.04650 7.50204 7.53576 7.63813 8.13625 8.34463 9.46092 10.01601 10.36149 11.38376 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013850 B = 0.003053 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.184426 B = 9170.362843 C =10287.018567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.146 3.854 3 H 0.085 0.915 4 C -0.134 4.134 5 C 0.174 3.826 6 H 0.054 0.946 7 N -0.722 5.722 8 C -0.242 4.242 9 H 0.070 0.930 10 C -0.010 4.010 11 N -0.932 5.932 12 Si 0.905 3.095 13 H -0.286 1.286 14 H -0.292 1.292 15 H -0.286 1.286 16 C -0.153 4.153 17 C 0.089 3.911 18 N -0.586 5.586 19 C 0.561 3.439 20 O -0.528 6.528 21 C -0.169 4.169 22 C 0.185 3.815 23 N -0.457 5.457 24 C 0.270 3.730 25 N -0.417 5.417 26 C 0.110 3.890 27 C 0.070 3.930 28 N -0.406 5.406 29 C 0.019 3.981 30 C 0.030 3.970 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.192 0.808 43 H 0.184 0.816 44 H 0.183 0.817 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.034 -13.107 -13.870 21.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.044 3.956 3 H 0.103 0.897 4 C -0.173 4.173 5 C 0.064 3.936 6 H 0.072 0.928 7 N -0.364 5.364 8 C -0.373 4.373 9 H 0.088 0.912 10 C -0.207 4.207 11 N -0.580 5.580 12 Si 0.736 3.264 13 H -0.213 1.213 14 H -0.218 1.218 15 H -0.213 1.213 16 C -0.194 4.194 17 C -0.033 4.033 18 N -0.317 5.317 19 C 0.347 3.653 20 O -0.406 6.406 21 C -0.176 4.176 22 C 0.008 3.992 23 N -0.166 5.166 24 C 0.031 3.969 25 N -0.132 5.132 26 C -0.069 4.069 27 C -0.107 4.107 28 N -0.120 5.120 29 C -0.107 4.107 30 C 0.002 3.998 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.219 0.781 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.110 0.890 42 H 0.208 0.792 43 H 0.201 0.799 44 H 0.200 0.800 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.781 -13.474 -13.438 20.958 hybrid contribution 0.462 1.017 -0.134 1.125 sum -8.319 -12.457 -13.572 20.214 Atomic orbital electron populations 1.22203 0.93066 1.03253 1.00910 1.21336 0.94927 0.96235 0.83088 0.89746 1.22267 0.97401 1.00378 0.97241 1.20179 0.90417 0.88129 0.94893 0.92777 1.42507 1.13899 1.04735 1.75257 1.19182 0.89774 0.94303 1.34035 0.91171 1.24726 0.98266 0.95932 1.01753 1.69638 1.36616 1.00800 1.50943 0.86300 0.84714 0.76859 0.78478 1.21269 1.21778 1.21294 1.22590 1.01949 0.97944 0.96964 1.22383 0.79143 1.02966 0.98774 1.48091 1.07640 1.56037 1.19956 1.17834 0.85864 0.79946 0.81654 1.90846 1.16723 1.56949 1.76109 1.21335 0.99526 1.01003 0.95747 1.23884 0.89168 0.87270 0.98856 1.67582 1.27791 1.22912 0.98278 1.20124 0.91782 0.92570 0.92457 1.68335 1.25274 1.19988 0.99608 1.24322 0.92637 0.95823 0.94165 1.24220 0.94373 0.92177 0.99885 1.68597 1.24525 1.19733 0.99151 1.20182 0.97750 0.99203 0.93563 1.21698 0.95370 0.93880 0.88808 0.93548 0.90816 0.91926 0.91886 0.90413 0.78133 0.93410 0.90204 0.92944 0.90086 0.88987 0.79171 0.79896 0.80030 0.81958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 7.61 37.16 0.28 -1.72 16 2 C 0.15 2.27 3.19 -67.60 -0.22 2.05 16 3 H 0.08 1.51 6.65 -51.93 -0.35 1.16 16 4 C -0.13 -2.02 5.07 -26.61 -0.13 -2.16 16 5 C 0.17 3.04 3.10 -67.89 -0.21 2.83 16 6 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 7 N -0.72 -16.14 4.31 -53.39 -0.23 -16.37 16 8 C -0.24 -6.19 9.93 -15.06 -0.15 -6.34 16 9 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 10 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 11 N -0.93 -26.79 13.06 55.49 0.72 -26.06 16 12 Si 0.91 21.54 29.55 -169.99 -5.02 16.51 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 16 C -0.15 -2.29 5.44 -26.61 -0.14 -2.43 16 17 C 0.09 1.32 5.27 -3.71 -0.02 1.30 16 18 N -0.59 -8.66 2.97 -166.32 -0.49 -9.16 16 19 C 0.56 8.22 7.20 -12.33 -0.09 8.13 16 20 O -0.53 -8.67 12.41 5.32 0.07 -8.61 16 21 C -0.17 -2.20 5.45 -104.82 -0.57 -2.77 16 22 C 0.18 2.33 8.55 -17.09 -0.15 2.18 16 23 N -0.46 -6.44 10.39 -12.28 -0.13 -6.57 16 24 C 0.27 3.68 7.60 -157.61 -1.20 2.48 16 25 N -0.42 -5.05 10.55 -12.39 -0.13 -5.18 16 26 C 0.11 0.81 11.21 -17.20 -0.19 0.61 16 27 C 0.07 0.50 11.22 -17.20 -0.19 0.30 16 28 N -0.41 -4.42 10.46 -10.77 -0.11 -4.53 16 29 C 0.02 0.25 6.59 -84.78 -0.56 -0.31 16 30 C 0.03 0.38 9.71 -38.38 -0.37 0.01 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.16 6.68 -51.93 -0.35 0.82 16 33 H 0.06 0.94 6.82 -51.93 -0.35 0.58 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.38 9.22 6.06 -40.82 -0.25 8.98 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.05 0.65 7.61 -51.93 -0.40 0.26 16 40 H 0.08 1.05 3.52 -51.93 -0.18 0.87 16 41 H 0.09 1.65 7.74 -51.93 -0.40 1.25 16 42 H 0.19 2.13 4.97 -52.49 -0.26 1.87 16 43 H 0.18 0.49 8.06 -52.49 -0.42 0.07 16 44 H 0.18 0.46 8.06 -52.49 -0.42 0.04 16 45 H 0.16 1.89 8.01 -52.49 -0.42 1.47 16 LS Contribution 358.62 15.07 5.40 5.40 Total: -1.00 -32.33 358.62 -9.39 -41.72 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -5.46 Total: 9.05 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -4.01 Total: 3.78 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: -0.37 Total: -67.87 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.07 Total: -8.61 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.33 -9.39 -41.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044633290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.190 kcal (2) G-P(sol) polarization free energy of solvation -32.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds