Wall clock time and date at job start Sat Apr 11 2020 06:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.57937 * 2 1 4 4 C 1.53192 * 109.58757 * 120.27614 * 2 1 3 5 5 C 1.53037 * 109.31259 * 174.42403 * 4 2 1 6 6 H 1.08999 * 109.45939 * 178.63041 * 5 4 2 7 7 N 1.46494 * 109.45844 * 58.65735 * 5 4 2 8 8 C 1.36941 * 119.99839 * 154.99614 * 7 5 4 9 9 H 1.08001 * 119.99731 * 359.72988 * 8 7 5 10 10 C 1.38815 * 120.00211 * 179.72237 * 8 7 5 11 11 N 1.31617 * 119.99637 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00108 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46917 * 60.00443 * 12 10 8 14 14 H 1.48494 * 109.46855 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47168 * 300.00435 * 12 10 8 16 16 C 1.53042 * 109.53931 * 298.63820 * 5 4 2 17 17 C 1.53195 * 109.30996 * 61.36382 * 16 5 4 18 18 N 1.46918 * 109.58812 * 239.56977 * 2 1 3 19 19 C 1.34778 * 120.62947 * 6.58446 * 18 2 1 20 20 O 1.21549 * 120.00507 * 6.24813 * 19 18 2 21 21 C 1.47853 * 119.99735 * 186.24978 * 19 18 2 22 22 C 1.40599 * 120.27492 * 33.50220 * 21 19 18 23 23 N 1.30819 * 121.51153 * 179.68413 * 22 21 19 24 24 C 1.33759 * 121.80092 * 0.59718 * 23 22 21 25 25 N 1.33884 * 120.61453 * 179.69935 * 24 23 22 26 26 C 1.31326 * 119.85010 * 180.02562 * 25 24 23 27 27 C 1.39761 * 120.77247 * 359.95124 * 26 25 24 28 28 N 1.31313 * 120.55370 * 0.02579 * 27 26 25 29 29 C 1.33662 * 119.70693 * 359.97438 * 28 27 26 30 30 C 1.38908 * 120.27639 * 213.76867 * 21 19 18 31 31 H 1.08998 * 109.47247 * 292.56050 * 1 2 3 32 32 H 1.09003 * 109.47175 * 52.56441 * 1 2 3 33 33 H 1.09004 * 109.46606 * 172.56006 * 1 2 3 34 34 H 1.09001 * 109.48976 * 54.47463 * 4 2 1 35 35 H 1.08998 * 109.50019 * 294.38176 * 4 2 1 36 36 H 0.97000 * 120.00435 * 334.72984 * 7 5 4 37 37 H 0.97003 * 119.99644 * 179.97438 * 11 10 8 38 38 H 1.08992 * 109.49885 * 181.31815 * 16 5 4 39 39 H 1.09000 * 109.49762 * 301.41849 * 16 5 4 40 40 H 1.09007 * 109.58110 * 185.57864 * 17 16 5 41 41 H 1.08997 * 109.70301 * 65.22508 * 17 16 5 42 42 H 1.08000 * 119.24302 * 359.97438 * 22 21 19 43 43 H 1.07995 * 119.61898 * 179.97438 * 26 25 24 44 44 H 1.07998 * 119.72362 * 180.02562 * 27 26 25 45 45 H 1.07996 * 120.99767 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7277 1.2464 5 6 3.5675 -0.8463 1.1713 6 1 3.9378 -1.3421 2.0686 7 7 4.1569 0.4913 1.0743 8 6 5.4413 0.7059 1.4982 9 1 6.0181 -0.1100 1.9079 10 6 6.0019 1.9721 1.4010 11 7 5.2987 2.9665 0.9019 12 14 7.7541 2.2647 1.9785 13 1 8.6813 1.4015 1.2036 14 1 8.1128 3.6903 1.7690 15 1 7.8610 1.9348 3.4225 16 6 3.9570 -1.6656 -0.0612 17 6 3.4651 -0.9485 -1.3224 18 7 2.0226 -0.7011 -1.1935 19 6 1.1674 -1.1097 -2.1517 20 8 -0.0067 -0.8012 -2.0903 21 6 1.6574 -1.9333 -3.2776 22 6 2.7001 -2.8555 -3.0799 23 7 3.1482 -3.6007 -4.0573 24 6 2.6476 -3.5162 -5.2948 25 7 3.1283 -4.2862 -6.2789 26 6 2.6259 -4.1905 -7.4885 27 6 1.5909 -3.2926 -7.7639 28 7 1.1018 -2.5267 -6.8161 29 6 1.5977 -2.6071 -5.5775 30 6 1.0953 -1.7984 -4.5406 31 1 -0.3633 0.3943 0.9490 32 1 -0.3634 0.6247 -0.8160 33 1 -0.3633 -1.0191 -0.1331 34 1 1.6030 -1.7235 1.2935 35 1 1.7660 -0.1640 2.1371 36 1 3.6389 1.2242 0.7063 37 1 5.6903 3.8514 0.8344 38 1 5.0412 -1.7695 -0.1013 39 1 3.4984 -2.6527 -0.0018 40 1 3.6519 -1.5745 -2.1950 41 1 3.9900 0.0001 -1.4341 42 1 3.1380 -2.9544 -2.0976 43 1 3.0168 -4.8132 -8.2796 44 1 1.1901 -3.2281 -8.7647 45 1 0.2959 -1.0951 -4.7214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044633290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:39 Heat of formation + Delta-G solvation = 79.262496 kcal Electronic energy + Delta-G solvation = -29846.206162 eV Core-core repulsion = 25865.023649 eV Total energy + Delta-G solvation = -3981.182514 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.94738 -41.77902 -39.47109 -38.85394 -36.19095 -35.94784 -34.43559 -33.69218 -33.07476 -31.94097 -30.87166 -28.54383 -27.36077 -26.33247 -25.70789 -25.16827 -24.23921 -23.22406 -22.13672 -20.80291 -19.87911 -19.27767 -19.15270 -18.68920 -17.48202 -17.32589 -16.79976 -16.69888 -16.61627 -16.06134 -15.80243 -15.56021 -15.31482 -15.19807 -14.84228 -14.80760 -14.46349 -14.27296 -13.90093 -13.73497 -13.48362 -13.32720 -13.00766 -12.94861 -12.87384 -12.78397 -12.65059 -12.47663 -12.17437 -12.03708 -11.98753 -11.76906 -11.59598 -11.39202 -10.89029 -10.61383 -10.43056 -10.22703 -9.90402 -9.60764 -8.94412 -7.89203 -5.15921 -1.24463 -0.95844 0.54316 1.17670 1.50372 1.51337 1.57097 1.67659 1.91495 2.36429 2.59929 2.77800 2.79648 2.86424 3.21519 3.34538 3.44836 3.54167 3.73225 3.83514 3.88174 3.93472 3.97793 4.07309 4.21858 4.26151 4.31915 4.36017 4.48350 4.53716 4.64892 4.71489 4.74584 4.85403 4.94703 5.04760 5.13260 5.21457 5.23743 5.27443 5.35340 5.42763 5.59651 5.67727 5.78547 6.27521 6.31662 6.33015 6.70167 6.95059 7.40306 8.16991 8.39088 9.33901 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013850 B = 0.003053 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.184426 B = 9170.362843 C =10287.018567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.147 3.853 3 H 0.055 0.945 4 C -0.123 4.123 5 C 0.166 3.834 6 H 0.055 0.945 7 N -0.731 5.731 8 C -0.229 4.229 9 H 0.078 0.922 10 C -0.075 4.075 11 N -0.970 5.970 12 Si 0.964 3.036 13 H -0.279 1.279 14 H -0.303 1.303 15 H -0.281 1.281 16 C -0.145 4.145 17 C 0.098 3.902 18 N -0.585 5.585 19 C 0.565 3.435 20 O -0.547 6.547 21 C -0.179 4.179 22 C 0.182 3.818 23 N -0.477 5.477 24 C 0.250 3.750 25 N -0.456 5.456 26 C 0.132 3.868 27 C 0.092 3.908 28 N -0.433 5.433 29 C 0.005 3.995 30 C 0.030 3.970 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.373 0.627 37 H 0.247 0.753 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.055 0.945 42 H 0.202 0.798 43 H 0.236 0.764 44 H 0.235 0.765 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.253 -15.749 -15.902 24.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.045 3.955 3 H 0.073 0.927 4 C -0.161 4.161 5 C 0.058 3.942 6 H 0.073 0.927 7 N -0.372 5.372 8 C -0.361 4.361 9 H 0.096 0.904 10 C -0.267 4.267 11 N -0.621 5.621 12 Si 0.794 3.206 13 H -0.206 1.206 14 H -0.230 1.230 15 H -0.207 1.207 16 C -0.185 4.185 17 C -0.024 4.024 18 N -0.317 5.317 19 C 0.353 3.647 20 O -0.427 6.427 21 C -0.186 4.186 22 C 0.007 3.993 23 N -0.186 5.186 24 C 0.011 3.989 25 N -0.171 5.171 26 C -0.048 4.048 27 C -0.086 4.086 28 N -0.148 5.148 29 C -0.119 4.119 30 C 0.003 3.997 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.206 0.794 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.120 0.880 41 H 0.073 0.927 42 H 0.218 0.782 43 H 0.252 0.748 44 H 0.251 0.749 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.005 -16.163 -15.418 24.084 hybrid contribution 0.455 1.672 0.204 1.745 sum -8.550 -14.490 -15.214 22.684 Atomic orbital electron populations 1.22056 0.92085 1.02958 1.01034 1.21228 0.95531 0.94946 0.83808 0.92744 1.22160 0.95620 1.01661 0.96700 1.20446 0.91780 0.86033 0.95963 0.92747 1.42679 1.13038 1.06535 1.74968 1.19572 0.90845 0.94089 1.31568 0.90414 1.25418 1.01651 0.96187 1.03428 1.69797 1.38002 1.00792 1.53519 0.85349 0.81087 0.75941 0.78208 1.20571 1.22965 1.20700 1.22458 1.01664 0.99072 0.95348 1.22248 0.78808 1.01472 0.99846 1.48047 1.07606 1.56043 1.19960 1.18000 0.85478 0.79579 0.81634 1.90834 1.17520 1.57800 1.76541 1.21112 1.00513 1.01597 0.95350 1.23902 0.89136 0.87221 0.99079 1.67555 1.28467 1.23559 0.99032 1.20337 0.92406 0.93400 0.92758 1.68408 1.26835 1.20914 1.00975 1.25317 0.91091 0.94840 0.93560 1.25201 0.92772 0.89636 1.00945 1.68676 1.25586 1.21459 0.99044 1.20159 0.97980 0.99326 0.94461 1.21784 0.95173 0.93832 0.88937 0.92208 0.92322 0.91871 0.89238 0.90720 0.79403 0.94398 0.91077 0.89426 0.87952 0.92662 0.78181 0.74773 0.74858 0.81798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.62 7.61 71.98 0.55 -3.07 16 2 C 0.15 4.64 3.19 44.98 0.14 4.79 16 3 H 0.05 2.06 6.65 -2.39 -0.02 2.04 16 4 C -0.12 -3.60 5.07 30.67 0.16 -3.44 16 5 C 0.17 5.70 3.10 45.02 0.14 5.84 16 6 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 7 N -0.73 -33.33 4.31 -322.82 -1.39 -34.72 16 8 C -0.23 -11.80 9.93 84.03 0.83 -10.97 16 9 H 0.08 3.83 7.83 -2.91 -0.02 3.80 16 10 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 11 N -0.97 -57.72 13.06 21.65 0.28 -57.44 16 12 Si 0.96 45.03 29.55 68.60 2.03 47.05 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 14 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 15 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 16 C -0.14 -4.18 5.44 30.67 0.17 -4.01 16 17 C 0.10 2.94 5.27 86.36 0.45 3.39 16 18 N -0.59 -17.48 2.97 -798.41 -2.37 -19.86 16 19 C 0.57 16.71 7.20 86.79 0.63 17.34 16 20 O -0.55 -18.17 12.41 -3.87 -0.05 -18.22 16 21 C -0.18 -4.69 5.45 -20.00 -0.11 -4.80 16 22 C 0.18 4.54 8.55 85.42 0.73 5.27 16 23 N -0.48 -13.30 10.39 -192.76 -2.00 -15.30 16 24 C 0.25 6.59 7.60 134.96 1.03 7.61 16 25 N -0.46 -10.07 10.55 -193.12 -2.04 -12.11 16 26 C 0.13 1.39 11.21 85.14 0.95 2.34 16 27 C 0.09 0.91 11.22 85.14 0.96 1.87 16 28 N -0.43 -8.49 10.46 -187.99 -1.97 -10.46 16 29 C 0.01 0.13 6.59 40.34 0.27 0.39 16 30 C 0.03 0.77 9.71 23.05 0.22 0.99 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.06 1.89 6.68 -2.39 -0.02 1.87 16 33 H 0.06 1.84 6.82 -2.38 -0.02 1.82 16 34 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.37 18.67 6.06 -92.71 -0.56 18.11 16 37 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 38 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.09 1.96 7.61 -2.39 -0.02 1.94 16 40 H 0.10 2.65 3.52 -2.38 -0.01 2.64 16 41 H 0.05 2.08 7.74 -2.39 -0.02 2.06 16 42 H 0.20 4.30 4.97 -2.91 -0.01 4.29 16 43 H 0.24 -0.17 8.06 -2.91 -0.02 -0.19 16 44 H 0.24 -0.29 8.06 -2.91 -0.02 -0.31 16 45 H 0.16 3.92 8.01 -2.91 -0.02 3.90 16 Total: -1.00 -73.73 358.62 0.56 -73.17 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: 0.49 Total: 27.99 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 7.58 Total: 19.89 kcal Atomic # 7 Polarization: -140.40 SS G_CDS: -9.49 Total: -149.88 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.05 Total: -18.22 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -73.73 0.56 -73.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044633290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.431 kcal (2) G-P(sol) polarization free energy of solvation -73.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds