Wall clock time and date at job start Sat Apr 11 2020 06:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.58502 * 2 1 4 4 C 1.53164 * 109.59071 * 239.56786 * 2 1 3 5 5 C 1.53037 * 109.33049 * 185.56996 * 4 2 1 6 6 H 1.08996 * 109.46233 * 181.38711 * 5 4 2 7 7 N 1.46504 * 109.45719 * 301.35954 * 5 4 2 8 8 C 1.36934 * 119.99894 * 205.02849 * 7 5 4 9 9 H 1.08002 * 119.99998 * 359.97438 * 8 7 5 10 10 C 1.38810 * 120.00298 * 179.97438 * 8 7 5 11 11 N 1.31625 * 119.99650 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00405 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47070 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47140 * 240.00198 * 12 10 8 15 15 H 1.48503 * 109.47000 * 119.99871 * 12 10 8 16 16 C 1.53036 * 109.52564 * 61.36711 * 5 4 2 17 17 C 1.53193 * 109.31646 * 298.64242 * 16 5 4 18 18 N 1.46923 * 109.58665 * 120.28327 * 2 1 3 19 19 C 1.34776 * 120.63184 * 353.37695 * 18 2 1 20 20 O 1.21550 * 120.00031 * 357.85504 * 19 18 2 21 21 C 1.47845 * 119.99663 * 177.86041 * 19 18 2 22 22 C 1.40593 * 120.28204 * 32.92620 * 21 19 18 23 23 N 1.30818 * 121.51560 * 179.69436 * 22 21 19 24 24 C 1.33752 * 121.79767 * 0.58243 * 23 22 21 25 25 N 1.33893 * 120.61045 * 179.66510 * 24 23 22 26 26 C 1.31337 * 119.84408 * 180.02562 * 25 24 23 27 27 C 1.39758 * 120.77252 * 0.03740 * 26 25 24 28 28 N 1.31304 * 120.55927 * 359.97438 * 27 26 25 29 29 C 1.33666 * 119.70875 * 0.02562 * 28 27 26 30 30 C 1.38909 * 120.27105 * 213.19895 * 21 19 18 31 31 H 1.08996 * 109.47237 * 306.38963 * 1 2 3 32 32 H 1.09004 * 109.47248 * 66.39329 * 1 2 3 33 33 H 1.09006 * 109.46869 * 186.39373 * 1 2 3 34 34 H 1.09008 * 109.47858 * 65.61528 * 4 2 1 35 35 H 1.09004 * 109.49950 * 305.53565 * 4 2 1 36 36 H 0.97001 * 120.00411 * 25.02312 * 7 5 4 37 37 H 0.97000 * 120.00004 * 359.97438 * 11 10 8 38 38 H 1.09001 * 109.49559 * 58.60007 * 16 5 4 39 39 H 1.09008 * 109.49689 * 178.66057 * 16 5 4 40 40 H 1.08994 * 109.58778 * 174.41807 * 17 16 5 41 41 H 1.08995 * 109.58775 * 294.70686 * 17 16 5 42 42 H 1.07995 * 119.23820 * 359.97438 * 22 21 19 43 43 H 1.08000 * 119.61018 * 180.02562 * 26 25 24 44 44 H 1.08001 * 119.71355 * 180.02562 * 27 26 25 45 45 H 1.08000 * 121.00183 * 359.97312 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7309 -1.2442 5 6 3.5675 -0.8494 -1.1692 6 1 3.9376 -1.3474 -2.0653 7 7 4.1570 0.4886 -1.0756 8 6 5.4410 0.7022 -1.5007 9 1 6.0193 -0.1156 -1.9046 10 6 5.9994 1.9700 -1.4126 11 7 5.2949 2.9666 -0.9199 12 14 7.7513 2.2614 -1.9919 13 1 8.3231 0.9882 -2.4993 14 1 8.5720 2.7557 -0.8574 15 1 7.7512 3.2718 -3.0801 16 6 3.9569 -1.6655 0.0655 17 6 3.4651 -0.9452 1.3249 18 7 2.0225 -0.6980 1.1953 19 6 1.1675 -1.1035 2.1549 20 8 -0.0189 -0.8584 2.0550 21 6 1.6725 -1.8464 3.3292 22 6 2.9527 -1.5748 3.8430 23 7 3.4213 -2.2133 4.8842 24 6 2.7137 -3.1630 5.5058 25 7 3.2192 -3.8062 6.5657 26 6 2.5115 -4.7366 7.1643 27 6 1.2324 -5.0667 6.7078 28 7 0.7143 -4.4508 5.6704 29 6 1.4164 -3.5005 5.0454 30 6 0.8882 -2.8225 3.9307 31 1 -0.3633 0.6097 0.8272 32 1 -0.3634 0.4115 -0.9417 33 1 -0.3633 -1.0213 0.1144 34 1 1.7657 -0.1694 -2.1362 35 1 1.6029 -1.7269 -1.2889 36 1 3.6378 1.2231 -0.7126 37 1 4.3853 2.8153 -0.6187 38 1 3.4984 -2.6527 0.0084 39 1 5.0413 -1.7698 0.1055 40 1 3.6518 -1.5689 2.1990 41 1 3.9922 0.0027 1.4330 42 1 3.5615 -0.8186 3.3698 43 1 2.9228 -5.2527 8.0192 44 1 0.6652 -5.8343 7.2132 45 1 -0.0972 -3.0541 3.5544 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044633291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:46 Heat of formation + Delta-G solvation = 107.596544 kcal Electronic energy + Delta-G solvation = -29891.174259 eV Core-core repulsion = 25911.220402 eV Total energy + Delta-G solvation = -3979.953857 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.12731 -40.73382 -38.58478 -37.65552 -35.40889 -34.61230 -33.36179 -32.25220 -32.12495 -31.06391 -28.96278 -27.24688 -26.57176 -25.53947 -24.21851 -23.50576 -23.38455 -22.11922 -21.16845 -19.70421 -19.05754 -18.27515 -17.90604 -17.35432 -16.45944 -16.07178 -16.00090 -15.68179 -15.39207 -15.15312 -14.74616 -14.35680 -14.27301 -13.75655 -13.72040 -13.43631 -13.32832 -13.10772 -13.03330 -12.81421 -12.29135 -12.17604 -12.14217 -12.02551 -11.63742 -11.37079 -11.06149 -10.88176 -10.79339 -10.56245 -10.38513 -10.30327 -10.07139 -9.71234 -9.53423 -9.30489 -9.22905 -9.02078 -8.97498 -8.41954 -7.11899 -6.15898 -3.17530 -0.46398 -0.16840 1.35818 2.02445 2.70356 2.91357 3.12932 3.49041 3.54556 3.54856 3.58620 3.63487 3.63904 4.12964 4.19579 4.27158 4.47167 4.60704 4.61585 4.84117 4.90178 5.04338 5.13074 5.21232 5.29404 5.40206 5.45522 5.47786 5.56045 5.58410 5.68315 5.80624 5.87383 5.91788 5.99199 6.11741 6.22094 6.31719 6.38590 6.51535 6.56225 6.57857 6.65231 6.84041 7.01070 7.40546 7.50871 7.76212 8.05824 8.68905 9.14298 10.00728 10.15319 11.31772 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014711 B = 0.003059 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.878520 B = 9151.629977 C =10445.625692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.147 3.853 3 H 0.080 0.920 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.054 0.946 7 N -0.733 5.733 8 C -0.332 4.332 9 H 0.065 0.935 10 C -0.043 4.043 11 N -0.943 5.943 12 Si 1.083 2.917 13 H -0.295 1.295 14 H -0.293 1.293 15 H -0.294 1.294 16 C -0.148 4.148 17 C 0.085 3.915 18 N -0.586 5.586 19 C 0.561 3.439 20 O -0.527 6.527 21 C -0.169 4.169 22 C 0.178 3.822 23 N -0.455 5.455 24 C 0.270 3.730 25 N -0.417 5.417 26 C 0.110 3.890 27 C 0.071 3.929 28 N -0.406 5.406 29 C 0.019 3.981 30 C 0.031 3.969 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.366 0.634 37 H 0.255 0.745 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.197 0.803 43 H 0.185 0.815 44 H 0.183 0.817 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.341 -16.062 12.458 22.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.045 3.955 3 H 0.098 0.902 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.072 0.928 7 N -0.377 5.377 8 C -0.463 4.463 9 H 0.083 0.917 10 C -0.241 4.241 11 N -0.588 5.588 12 Si 0.914 3.086 13 H -0.222 1.222 14 H -0.220 1.220 15 H -0.221 1.221 16 C -0.190 4.190 17 C -0.037 4.037 18 N -0.318 5.318 19 C 0.348 3.652 20 O -0.406 6.406 21 C -0.176 4.176 22 C 0.002 3.998 23 N -0.164 5.164 24 C 0.031 3.969 25 N -0.131 5.131 26 C -0.069 4.069 27 C -0.106 4.106 28 N -0.121 5.121 29 C -0.108 4.108 30 C 0.003 3.997 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.201 0.799 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.213 0.787 43 H 0.201 0.799 44 H 0.200 0.800 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -7.750 -14.629 12.317 20.634 hybrid contribution -1.906 -1.309 0.045 2.312 sum -9.655 -15.938 12.362 22.362 Atomic orbital electron populations 1.22218 0.92837 1.03404 1.00879 1.21319 0.95147 0.95805 0.83237 0.90203 1.22276 0.97462 1.00460 0.97205 1.20125 0.90181 0.87741 0.95088 0.92843 1.42523 1.14124 1.04662 1.76375 1.20079 0.90406 0.97002 1.38787 0.91670 1.25724 1.06044 0.91558 1.00736 1.70846 1.10965 1.32395 1.44584 0.83175 0.74473 0.74786 0.76136 1.22155 1.22010 1.22087 1.22510 1.01794 0.97947 0.96699 1.22611 0.79210 1.02326 0.99582 1.48098 1.07719 1.56111 1.19835 1.17845 0.85987 0.79474 0.81934 1.90857 1.15705 1.56721 1.77292 1.21300 0.96571 1.00039 0.99698 1.24119 0.91399 0.95804 0.88463 1.67612 1.34791 1.06290 1.07660 1.20151 0.89213 0.94100 0.93454 1.68356 1.34103 1.05248 1.05434 1.24339 0.91868 0.92321 0.98384 1.24221 0.94698 0.98560 0.93151 1.68591 1.33483 1.03890 1.06091 1.20174 0.94146 0.97911 0.98536 1.21667 0.99265 0.89322 0.89462 0.90860 0.93623 0.91633 0.90518 0.91809 0.79921 0.93417 0.93095 0.90382 0.89392 0.88932 0.78676 0.79861 0.80009 0.82003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 7.60 37.16 0.28 -1.69 16 2 C 0.15 2.26 3.19 -67.61 -0.22 2.04 16 3 H 0.08 1.37 6.65 -51.93 -0.35 1.02 16 4 C -0.14 -2.08 5.07 -26.63 -0.13 -2.21 16 5 C 0.18 3.21 3.10 -67.89 -0.21 3.00 16 6 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 7 N -0.73 -16.41 4.31 -53.39 -0.23 -16.64 16 8 C -0.33 -8.62 9.93 -15.06 -0.15 -8.77 16 9 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 10 C -0.04 -1.18 5.50 -17.43 -0.10 -1.27 16 11 N -0.94 -27.75 13.70 55.49 0.76 -26.99 16 12 Si 1.08 25.09 29.92 -169.99 -5.09 20.00 16 13 H -0.30 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 C -0.15 -2.33 5.78 -26.61 -0.15 -2.48 16 17 C 0.08 1.23 4.65 -3.71 -0.02 1.21 16 18 N -0.59 -8.55 2.97 -166.34 -0.49 -9.05 16 19 C 0.56 8.12 7.31 -12.33 -0.09 8.03 16 20 O -0.53 -8.55 12.28 5.32 0.07 -8.48 16 21 C -0.17 -2.18 5.53 -104.83 -0.58 -2.76 16 22 C 0.18 2.29 8.60 -17.10 -0.15 2.14 16 23 N -0.45 -6.51 10.39 -12.91 -0.13 -6.64 16 24 C 0.27 3.67 7.60 -157.60 -1.20 2.47 16 25 N -0.42 -5.03 10.55 -12.39 -0.13 -5.16 16 26 C 0.11 0.79 11.21 -17.20 -0.19 0.60 16 27 C 0.07 0.48 11.22 -17.21 -0.19 0.29 16 28 N -0.41 -4.29 10.46 -10.77 -0.11 -4.40 16 29 C 0.02 0.23 6.59 -84.78 -0.56 -0.33 16 30 C 0.03 0.37 9.71 -38.38 -0.37 0.00 16 31 H 0.07 1.14 6.70 -51.93 -0.35 0.79 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.98 6.78 -51.93 -0.35 0.62 16 34 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.37 8.52 4.90 -40.82 -0.20 8.32 16 37 H 0.25 7.34 6.77 -40.82 -0.28 7.07 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.32 8.14 -51.92 -0.42 0.89 16 40 H 0.09 1.12 3.52 -53.36 -0.19 0.93 16 41 H 0.09 1.55 7.74 -51.93 -0.40 1.14 16 42 H 0.20 2.31 5.30 -52.49 -0.28 2.03 16 43 H 0.18 0.47 8.06 -52.49 -0.42 0.05 16 44 H 0.18 0.41 8.06 -52.49 -0.42 -0.02 16 45 H 0.16 1.81 8.01 -52.49 -0.42 1.39 16 LS Contribution 357.59 15.07 5.39 5.39 Total: -1.00 -33.33 357.59 -9.40 -42.72 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -5.40 Total: 8.98 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -4.03 Total: 0.28 kcal Atomic # 7 Polarization: -68.54 SS G_CDS: -0.34 Total: -68.89 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.07 Total: -8.48 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.09 Total: 20.00 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.33 -9.40 -42.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044633291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.318 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds