Wall clock time and date at job start Sat Apr 11 2020 06:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.58232 * 2 1 4 4 C 1.53187 * 109.58423 * 239.71366 * 2 1 3 5 5 C 1.53045 * 109.34147 * 185.55937 * 4 2 1 6 6 H 1.08994 * 109.46492 * 181.40673 * 5 4 2 7 7 N 1.46502 * 109.45817 * 301.36604 * 5 4 2 8 8 C 1.36934 * 119.99770 * 204.99224 * 7 5 4 9 9 H 1.07998 * 120.00025 * 0.02562 * 8 7 5 10 10 C 1.38815 * 120.00123 * 179.97438 * 8 7 5 11 11 N 1.31628 * 119.99781 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00315 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46955 * 60.00745 * 12 10 8 14 14 H 1.48498 * 109.47366 * 180.02562 * 12 10 8 15 15 H 1.48492 * 109.47182 * 300.00404 * 12 10 8 16 16 C 1.53103 * 109.49993 * 61.34717 * 5 4 2 17 17 C 1.53193 * 109.33417 * 298.66051 * 16 5 4 18 18 N 1.46927 * 109.58500 * 120.42798 * 2 1 3 19 19 C 1.34773 * 120.63361 * 353.37382 * 18 2 1 20 20 O 1.21481 * 119.99714 * 3.75088 * 19 18 2 21 21 C 1.48437 * 120.00002 * 183.75765 * 19 18 2 22 22 N 1.33490 * 119.22006 * 32.28297 * 21 19 18 23 23 N 1.28921 * 122.02191 * 179.69126 * 22 21 19 24 24 C 1.33813 * 119.74260 * 0.57834 * 23 22 21 25 25 C 1.40333 * 121.78026 * 179.69921 * 24 23 22 26 26 C 1.36182 * 119.62709 * 180.02562 * 25 24 23 27 27 C 1.39441 * 121.07367 * 359.97438 * 26 25 24 28 28 C 1.36139 * 121.01139 * 0.02562 * 27 26 25 29 29 C 1.40505 * 119.56441 * 359.97438 * 28 27 26 30 30 N 1.32060 * 119.21916 * 212.54754 * 21 19 18 31 31 H 1.09008 * 109.46983 * 183.31450 * 1 2 3 32 32 H 1.09007 * 109.46934 * 303.30811 * 1 2 3 33 33 H 1.08998 * 109.47395 * 63.31292 * 1 2 3 34 34 H 1.08995 * 109.50058 * 305.52852 * 4 2 1 35 35 H 1.09000 * 109.50034 * 65.59743 * 4 2 1 36 36 H 0.96995 * 120.00194 * 24.99556 * 7 5 4 37 37 H 0.96999 * 119.99803 * 180.02562 * 11 10 8 38 38 H 1.08995 * 109.49101 * 178.70330 * 16 5 4 39 39 H 1.09007 * 109.48793 * 58.61668 * 16 5 4 40 40 H 1.08994 * 109.58822 * 294.84770 * 17 16 5 41 41 H 1.09007 * 109.58888 * 174.42022 * 17 16 5 42 42 H 1.08011 * 120.18487 * 359.97438 * 25 24 23 43 43 H 1.08007 * 119.46595 * 179.97438 * 26 25 24 44 44 H 1.08001 * 119.49559 * 179.97438 * 27 26 25 45 45 H 1.07993 * 120.21909 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7279 -1.2463 5 6 3.5675 -0.8465 -1.1721 6 1 3.9374 -1.3420 -2.0697 7 7 4.1570 0.4911 -1.0752 8 6 5.4412 0.7057 -1.4996 9 1 6.0192 -0.1110 -1.9060 10 6 5.9997 1.9733 -1.4083 11 7 5.2950 2.9688 -0.9134 12 14 7.7511 2.2662 -1.9878 13 1 7.8579 1.9303 -3.4304 14 1 8.1080 3.6932 -1.7837 15 1 8.6801 1.4080 -1.2096 16 6 3.9569 -1.6658 0.0613 17 6 3.4651 -0.9486 1.3225 18 7 2.0225 -0.7011 1.1936 19 6 1.1674 -1.1089 2.1522 20 8 -0.0288 -0.9590 2.0029 21 6 1.6874 -1.7412 3.3905 22 7 2.8727 -1.3575 3.8698 23 7 3.3729 -1.8660 4.9437 24 6 2.7008 -2.8166 5.6035 25 6 3.2079 -3.4038 6.7729 26 6 2.4870 -4.3683 7.4091 27 6 1.2499 -4.7838 6.9180 28 6 0.7251 -4.2379 5.7866 29 6 1.4395 -3.2400 5.1025 30 7 0.9688 -2.6737 3.9889 31 1 -0.3633 -1.0260 0.0594 32 1 -0.3633 0.5644 0.8589 33 1 -0.3634 0.4615 -0.9182 34 1 1.6029 -1.7237 -1.2934 35 1 1.7655 -0.1645 -2.1370 36 1 3.6378 1.2247 -0.7105 37 1 5.6851 3.8546 -0.8500 38 1 5.0411 -1.7697 0.1014 39 1 3.4982 -2.6529 0.0019 40 1 3.9903 0.0002 1.4316 41 1 3.6518 -1.5745 2.1952 42 1 4.1648 -3.0931 7.1657 43 1 2.8799 -4.8188 8.3087 44 1 0.6999 -5.5510 7.4427 45 1 -0.2344 -4.5690 5.4178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044685952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:52 Heat of formation + Delta-G solvation = 110.517777 kcal Electronic energy + Delta-G solvation = -29859.886428 eV Core-core repulsion = 25880.059245 eV Total energy + Delta-G solvation = -3979.827183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.34668 -40.29121 -38.42955 -37.50050 -35.53950 -34.26036 -33.13868 -31.91898 -31.84887 -31.18172 -29.09152 -27.20706 -26.71915 -25.74659 -24.09561 -23.44622 -22.96816 -22.25533 -20.94757 -19.58813 -19.28299 -18.38407 -17.20921 -16.95060 -16.55492 -16.27141 -15.81422 -15.38703 -15.09347 -14.75390 -14.45631 -14.28789 -13.95091 -13.83388 -13.31942 -13.24090 -13.11487 -12.90454 -12.64386 -12.55184 -12.41922 -12.22577 -12.09679 -11.96514 -11.80694 -11.36101 -11.15041 -10.86683 -10.78274 -10.60254 -10.41511 -10.26142 -9.98594 -9.88359 -9.67913 -9.58894 -9.17603 -9.05485 -8.89710 -8.22080 -6.96115 -5.75546 -3.04608 -0.62138 -0.18129 1.24995 2.00459 2.57947 2.76286 3.26510 3.45090 3.49902 3.50701 3.52068 3.54097 3.75362 4.08688 4.23797 4.48327 4.60297 4.62574 4.70632 5.03877 5.22346 5.27850 5.28402 5.39400 5.43527 5.47200 5.58638 5.63776 5.70873 5.75250 5.78039 5.91052 6.00504 6.02815 6.16685 6.23417 6.33307 6.41648 6.47347 6.55633 6.59167 6.73822 6.78659 6.87333 7.02824 7.54380 7.71002 7.92252 8.18354 8.42702 9.54103 10.10152 10.45247 11.46798 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014568 B = 0.003099 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.564551 B = 9032.857166 C =10331.667918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.146 3.854 3 H 0.089 0.911 4 C -0.133 4.133 5 C 0.174 3.826 6 H 0.052 0.948 7 N -0.721 5.721 8 C -0.240 4.240 9 H 0.069 0.931 10 C -0.011 4.011 11 N -0.932 5.932 12 Si 0.905 3.095 13 H -0.287 1.287 14 H -0.292 1.292 15 H -0.286 1.286 16 C -0.151 4.151 17 C 0.111 3.889 18 N -0.570 5.570 19 C 0.586 3.414 20 O -0.508 6.508 21 C 0.225 3.775 22 N -0.218 5.218 23 N -0.144 5.144 24 C 0.016 3.984 25 C -0.064 4.064 26 C -0.095 4.095 27 C -0.074 4.074 28 C -0.088 4.088 29 C 0.131 3.869 30 N -0.403 5.403 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.047 0.953 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.076 0.924 39 H 0.045 0.955 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.151 0.849 43 H 0.144 0.856 44 H 0.145 0.855 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.605 -16.810 15.886 24.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.045 3.955 3 H 0.107 0.893 4 C -0.172 4.172 5 C 0.063 3.937 6 H 0.070 0.930 7 N -0.363 5.363 8 C -0.371 4.371 9 H 0.087 0.913 10 C -0.207 4.207 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.214 1.214 14 H -0.218 1.218 15 H -0.213 1.213 16 C -0.193 4.193 17 C -0.011 4.011 18 N -0.302 5.302 19 C 0.367 3.633 20 O -0.382 6.382 21 C -0.047 4.047 22 N -0.079 5.079 23 N -0.007 5.007 24 C -0.116 4.116 25 C -0.086 4.086 26 C -0.115 4.115 27 C -0.096 4.096 28 C -0.107 4.107 29 C -0.008 4.008 30 N -0.125 5.125 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.219 0.781 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.169 0.831 43 H 0.162 0.838 44 H 0.162 0.838 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.693 -15.985 15.119 23.658 hybrid contribution 0.656 -0.173 0.364 0.770 sum -8.036 -16.158 15.483 23.778 Atomic orbital electron populations 1.22257 0.92992 1.03294 1.01011 1.21411 0.95028 0.96182 0.82921 0.89346 1.22263 0.97484 1.00334 0.97152 1.20210 0.90355 0.88185 0.94924 0.92957 1.42490 1.13830 1.04648 1.75374 1.19170 0.89819 0.94141 1.33974 0.91271 1.24719 0.98212 0.95922 1.01862 1.69643 1.36558 1.00644 1.51114 0.86299 0.84830 0.76825 0.78385 1.21390 1.21784 1.21308 1.22592 1.01605 0.97810 0.97254 1.22132 0.78030 1.02850 0.98111 1.48038 1.08329 1.54682 1.19170 1.17100 0.85914 0.79310 0.80983 1.90859 1.14590 1.55502 1.77280 1.24752 0.89248 0.92853 0.97839 1.74355 1.09174 1.19904 1.04508 1.74604 1.24434 1.02753 0.98912 1.21029 0.94624 0.97453 0.98518 1.20841 1.00754 0.95020 0.92008 1.21219 0.94280 0.95970 1.00065 1.21241 0.95240 0.98351 0.94788 1.20907 1.00590 0.94391 0.94813 1.19742 0.92633 0.96142 0.92303 1.69115 1.31501 1.05923 1.05973 0.91459 0.91102 0.93403 0.91956 0.90312 0.78106 0.93445 0.90549 0.93639 0.88708 0.90009 0.83112 0.83795 0.83773 0.83204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 7.59 37.16 0.28 -1.93 16 2 C 0.15 2.52 3.19 -67.60 -0.22 2.31 16 3 H 0.09 1.69 6.65 -51.93 -0.35 1.34 16 4 C -0.13 -2.23 5.07 -26.61 -0.13 -2.36 16 5 C 0.17 3.33 3.10 -67.85 -0.21 3.12 16 6 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 7 N -0.72 -17.11 4.31 -53.35 -0.23 -17.34 16 8 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 9 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 10 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 11 N -0.93 -27.52 13.06 55.49 0.72 -26.80 16 12 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 C -0.15 -2.67 5.78 -26.58 -0.15 -2.83 16 17 C 0.11 1.99 5.58 -3.71 -0.02 1.97 16 18 N -0.57 -10.01 2.97 -166.10 -0.49 -10.50 16 19 C 0.59 10.47 7.54 -12.06 -0.09 10.38 16 20 O -0.51 -9.69 12.41 5.38 0.07 -9.62 16 21 C 0.23 3.78 6.96 -156.56 -1.09 2.69 16 22 N -0.22 -3.61 8.29 32.10 0.27 -3.35 16 23 N -0.14 -2.12 11.68 32.28 0.38 -1.74 16 24 C 0.02 0.19 6.68 -84.71 -0.57 -0.37 16 25 C -0.06 -0.49 10.00 -39.53 -0.40 -0.89 16 26 C -0.09 -0.46 9.95 -39.87 -0.40 -0.86 16 27 C -0.07 -0.37 9.95 -39.89 -0.40 -0.76 16 28 C -0.09 -0.71 10.01 -39.48 -0.40 -1.11 16 29 C 0.13 1.61 6.61 -84.77 -0.56 1.05 16 30 N -0.40 -6.22 10.36 -8.99 -0.09 -6.31 16 31 H 0.07 1.11 6.82 -51.92 -0.35 0.76 16 32 H 0.07 1.21 6.67 -51.92 -0.35 0.86 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.38 9.71 6.07 -40.82 -0.25 9.46 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 40 H 0.09 1.96 7.74 -51.93 -0.40 1.56 16 41 H 0.08 1.41 4.68 -51.93 -0.24 1.17 16 42 H 0.15 0.87 8.06 -52.48 -0.42 0.45 16 43 H 0.14 0.22 8.06 -52.48 -0.42 -0.20 16 44 H 0.14 0.23 8.06 -52.49 -0.42 -0.19 16 45 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 363.19 15.07 5.47 5.47 Total: -1.00 -32.46 363.19 -9.23 -41.69 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -5.71 Total: 7.94 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -4.59 Total: 3.47 kcal Atomic # 7 Polarization: -66.58 SS G_CDS: 0.55 Total: -66.03 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.07 Total: -9.62 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.46 -9.23 -41.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044685952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.206 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds