Wall clock time and date at job start Sat Apr 11 2020 06:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.69830 * 2 1 4 4 C 1.53195 * 109.58458 * 120.34719 * 2 1 3 5 5 C 1.53038 * 109.31050 * 174.42513 * 4 2 1 6 6 H 1.09007 * 109.46020 * 178.61596 * 5 4 2 7 7 N 1.46501 * 109.46197 * 58.66056 * 5 4 2 8 8 C 1.36941 * 120.00254 * 154.93378 * 7 5 4 9 9 H 1.07995 * 120.00029 * 359.97438 * 8 7 5 10 10 C 1.38809 * 119.99758 * 179.97438 * 8 7 5 11 11 N 1.31614 * 120.00185 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99831 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47057 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47001 * 120.00040 * 12 10 8 15 15 H 1.48500 * 109.47147 * 240.00037 * 12 10 8 16 16 C 1.53036 * 109.54158 * 298.63596 * 5 4 2 17 17 C 1.53197 * 109.31134 * 61.36381 * 16 5 4 18 18 N 1.46918 * 109.59173 * 239.64017 * 2 1 3 19 19 C 1.34779 * 120.63043 * 6.57909 * 18 2 1 20 20 O 1.21484 * 119.99841 * 349.34620 * 19 18 2 21 21 C 1.48433 * 120.00146 * 169.33664 * 19 18 2 22 22 N 1.33494 * 119.22084 * 351.59837 * 21 19 18 23 23 N 1.28915 * 122.02405 * 179.68890 * 22 21 19 24 24 C 1.33819 * 119.74372 * 0.56679 * 23 22 21 25 25 C 1.40330 * 121.78205 * 179.70251 * 24 23 22 26 26 C 1.36191 * 119.62625 * 180.02562 * 25 24 23 27 27 C 1.39439 * 121.07121 * 359.97438 * 26 25 24 28 28 C 1.36130 * 121.01293 * 0.02562 * 27 26 25 29 29 C 1.40507 * 119.56553 * 359.97438 * 28 27 26 30 30 N 1.32062 * 119.21977 * 171.85817 * 21 19 18 31 31 H 1.09006 * 109.46752 * 175.38310 * 1 2 3 32 32 H 1.08993 * 109.47140 * 295.38317 * 1 2 3 33 33 H 1.08996 * 109.47122 * 55.38643 * 1 2 3 34 34 H 1.08999 * 109.50150 * 294.37725 * 4 2 1 35 35 H 1.08999 * 109.49725 * 54.44433 * 4 2 1 36 36 H 0.97001 * 119.99729 * 334.92374 * 7 5 4 37 37 H 0.97003 * 120.00427 * 180.02562 * 11 10 8 38 38 H 1.09005 * 109.50138 * 301.41615 * 16 5 4 39 39 H 1.09002 * 109.50054 * 181.31677 * 16 5 4 40 40 H 1.09004 * 109.58552 * 65.15574 * 17 16 5 41 41 H 1.09004 * 109.58545 * 185.43615 * 17 16 5 42 42 H 1.08003 * 120.18674 * 0.02562 * 25 24 23 43 43 H 1.08001 * 119.46220 * 179.97438 * 26 25 24 44 44 H 1.08000 * 119.49067 * 179.97438 * 27 26 25 45 45 H 1.08009 * 120.21588 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7292 1.2456 5 6 3.5674 -0.8478 1.1703 6 1 3.9378 -1.3445 2.0672 7 7 4.1570 0.4900 1.0751 8 6 5.4409 0.7044 1.5004 9 1 6.0188 -0.1127 1.9064 10 6 5.9996 1.9718 1.4097 11 7 5.2955 2.9674 0.9144 12 14 7.7507 2.2644 1.9905 13 1 8.3220 0.9922 2.5008 14 1 8.5730 2.7557 0.8557 15 1 7.7494 3.2777 3.0760 16 6 3.9570 -1.6656 -0.0631 17 6 3.4651 -0.9469 -1.3235 18 7 2.0227 -0.6996 -1.1943 19 6 1.1675 -1.1072 -2.1530 20 8 -0.0302 -1.0743 -1.9526 21 6 1.6891 -1.5960 -3.4539 22 7 2.9904 -1.4688 -3.7235 23 7 3.5019 -1.8796 -4.8332 24 6 2.7159 -2.4431 -5.7582 25 6 3.2263 -2.8995 -6.9831 26 6 2.3863 -3.4658 -7.8933 27 6 1.0240 -3.6010 -7.6288 28 6 0.4919 -3.1703 -6.4521 29 6 1.3270 -2.5808 -5.4882 30 7 0.8541 -2.1417 -4.3193 31 1 -0.3633 -1.0244 -0.0827 32 1 -0.3633 0.4405 0.9284 33 1 -0.3633 0.5837 -0.8457 34 1 1.7659 -0.1666 2.1369 35 1 1.6025 -1.7250 1.2918 36 1 3.6379 1.2239 0.7106 37 1 5.6860 3.8531 0.8506 38 1 3.4984 -2.6528 -0.0049 39 1 5.0413 -1.7694 -0.1033 40 1 3.9904 0.0021 -1.4315 41 1 3.6543 -1.5708 -2.1971 42 1 4.2793 -2.8023 -7.2027 43 1 2.7819 -3.8158 -8.8354 44 1 0.3809 -4.0536 -8.3691 45 1 -0.5652 -3.2818 -6.2605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044685953.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:57 Heat of formation + Delta-G solvation = 118.429835 kcal Electronic energy + Delta-G solvation = -29862.611484 eV Core-core repulsion = 25883.127394 eV Total energy + Delta-G solvation = -3979.484090 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.35059 -40.26369 -38.42729 -37.48235 -35.52845 -34.24504 -33.17838 -31.88976 -31.79077 -31.17071 -29.06326 -27.17209 -26.74158 -25.73418 -24.05636 -23.42061 -22.96916 -22.21453 -20.93282 -19.56681 -19.29073 -18.41155 -17.20137 -16.85862 -16.44544 -16.33673 -15.74094 -15.41451 -15.08931 -14.76497 -14.51051 -14.33870 -14.00327 -13.79746 -13.33728 -13.20298 -13.07529 -12.88235 -12.63794 -12.51114 -12.41415 -12.19674 -12.10373 -11.99527 -11.82615 -11.28294 -11.06419 -10.86555 -10.75895 -10.56762 -10.31667 -10.17984 -9.96264 -9.87230 -9.61806 -9.40540 -9.16961 -9.05302 -8.84945 -8.16858 -6.93573 -5.74550 -3.03065 -0.62932 -0.21432 1.24670 1.96985 2.61669 2.88122 3.20081 3.45077 3.50966 3.52509 3.52981 3.55623 3.78408 4.07457 4.23158 4.48356 4.61310 4.62094 4.70944 5.02411 5.25220 5.29243 5.31791 5.43212 5.45145 5.47251 5.65406 5.66655 5.70728 5.83291 5.84560 5.98383 6.01743 6.05694 6.20277 6.31999 6.41338 6.44642 6.52396 6.60060 6.63412 6.78747 6.82812 6.94132 7.09129 7.59524 7.73529 7.91526 8.22057 8.43839 9.55390 10.12116 10.47066 11.48068 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.003107 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.145683 B = 9009.665511 C =10381.562334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.146 3.854 3 H 0.087 0.913 4 C -0.133 4.133 5 C 0.172 3.828 6 H 0.051 0.949 7 N -0.721 5.721 8 C -0.236 4.236 9 H 0.071 0.929 10 C -0.013 4.013 11 N -0.932 5.932 12 Si 0.904 3.096 13 H -0.281 1.281 14 H -0.292 1.292 15 H -0.293 1.293 16 C -0.149 4.149 17 C 0.090 3.910 18 N -0.571 5.571 19 C 0.581 3.419 20 O -0.506 6.506 21 C 0.222 3.778 22 N -0.218 5.218 23 N -0.146 5.146 24 C 0.017 3.983 25 C -0.064 4.064 26 C -0.094 4.094 27 C -0.073 4.073 28 C -0.087 4.087 29 C 0.131 3.869 30 N -0.398 5.398 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.383 0.617 37 H 0.254 0.746 38 H 0.045 0.955 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.116 0.884 42 H 0.151 0.849 43 H 0.144 0.856 44 H 0.145 0.855 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.000 -14.829 -17.488 24.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.044 3.956 3 H 0.105 0.895 4 C -0.171 4.171 5 C 0.062 3.938 6 H 0.069 0.931 7 N -0.364 5.364 8 C -0.367 4.367 9 H 0.088 0.912 10 C -0.209 4.209 11 N -0.581 5.581 12 Si 0.736 3.264 13 H -0.206 1.206 14 H -0.220 1.220 15 H -0.220 1.220 16 C -0.190 4.190 17 C -0.032 4.032 18 N -0.302 5.302 19 C 0.362 3.638 20 O -0.380 6.380 21 C -0.050 4.050 22 N -0.078 5.078 23 N -0.009 5.009 24 C -0.115 4.115 25 C -0.086 4.086 26 C -0.115 4.115 27 C -0.096 4.096 28 C -0.107 4.107 29 C -0.008 4.008 30 N -0.120 5.120 31 H 0.094 0.906 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.218 0.782 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.132 0.868 42 H 0.169 0.831 43 H 0.162 0.838 44 H 0.162 0.838 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.017 -14.357 -16.515 23.668 hybrid contribution 0.590 0.178 -0.465 0.772 sum -8.426 -14.179 -16.980 23.672 Atomic orbital electron populations 1.22271 0.93108 1.03741 1.00637 1.21407 0.94934 0.96092 0.83177 0.89504 1.22248 0.97530 1.00300 0.97068 1.20218 0.90309 0.88179 0.95089 0.93084 1.42505 1.13856 1.04663 1.75354 1.19269 0.89802 0.94128 1.33514 0.91152 1.24712 0.98218 0.95946 1.02001 1.69659 1.36393 1.00593 1.51411 0.86157 0.84812 0.77587 0.77857 1.20626 1.21955 1.22030 1.22553 1.01537 0.97746 0.97212 1.22711 0.77545 1.03364 0.99571 1.48039 1.08620 1.54688 1.18900 1.17142 0.85967 0.79403 0.81267 1.90844 1.14713 1.53984 1.78435 1.24868 0.87973 0.94915 0.97225 1.74394 1.11147 1.12535 1.09764 1.74623 1.29127 1.01532 0.95575 1.21022 0.93063 0.99741 0.97704 1.20855 1.01600 0.95956 0.90213 1.21225 0.93329 0.97143 0.99827 1.21243 0.95564 0.96326 0.96452 1.20917 1.00649 0.97244 0.91888 1.19774 0.92135 0.96009 0.92869 1.69123 1.36700 1.05611 1.00569 0.90638 0.93386 0.91883 0.90457 0.91944 0.78174 0.93610 0.93677 0.90598 0.89292 0.86755 0.83097 0.83792 0.83765 0.83168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 7.60 37.16 0.28 -1.97 16 2 C 0.15 2.54 3.19 -67.60 -0.22 2.32 16 3 H 0.09 1.68 6.64 -51.93 -0.34 1.33 16 4 C -0.13 -2.24 5.07 -26.61 -0.13 -2.37 16 5 C 0.17 3.34 3.10 -67.89 -0.21 3.13 16 6 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 7 N -0.72 -17.25 4.31 -53.39 -0.23 -17.48 16 8 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 9 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 10 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 11 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 12 Si 0.90 22.20 29.55 -169.99 -5.02 17.18 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 15 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 16 C -0.15 -2.66 5.78 -26.61 -0.15 -2.81 16 17 C 0.09 1.62 5.53 -3.71 -0.02 1.60 16 18 N -0.57 -10.03 2.97 -166.11 -0.49 -10.53 16 19 C 0.58 10.34 7.59 -12.06 -0.09 10.25 16 20 O -0.51 -9.58 12.33 5.38 0.07 -9.51 16 21 C 0.22 3.69 7.46 -156.56 -1.17 2.52 16 22 N -0.22 -3.54 7.35 32.10 0.24 -3.30 16 23 N -0.15 -2.12 11.68 32.28 0.38 -1.74 16 24 C 0.02 0.21 6.68 -84.71 -0.57 -0.36 16 25 C -0.06 -0.49 10.00 -39.53 -0.40 -0.88 16 26 C -0.09 -0.45 9.95 -39.87 -0.40 -0.85 16 27 C -0.07 -0.36 9.95 -39.89 -0.40 -0.76 16 28 C -0.09 -0.71 10.01 -39.48 -0.40 -1.10 16 29 C 0.13 1.61 6.61 -84.77 -0.56 1.04 16 30 N -0.40 -6.13 10.23 -8.99 -0.09 -6.22 16 31 H 0.07 1.26 6.51 -51.93 -0.34 0.92 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 1.07 7.00 -51.93 -0.36 0.71 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.38 9.77 6.06 -40.82 -0.25 9.53 16 37 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.09 1.85 7.74 -51.93 -0.40 1.45 16 41 H 0.12 1.97 4.18 -118.89 -0.50 1.47 16 42 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 43 H 0.14 0.22 8.06 -52.49 -0.42 -0.21 16 44 H 0.14 0.23 8.06 -52.49 -0.42 -0.20 16 45 H 0.15 1.01 8.06 -52.48 -0.42 0.58 16 LS Contribution 362.04 15.07 5.46 5.46 Total: -1.00 -32.63 362.04 -9.61 -42.24 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -5.96 Total: 8.02 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -4.67 Total: 2.83 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: 0.52 Total: -66.21 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.07 Total: -9.51 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.63 -9.61 -42.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044685953.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.667 kcal (2) G-P(sol) polarization free energy of solvation -32.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds