Wall clock time and date at job start Sat Apr 11 2020 06:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.69830 * 2 1 4 4 C 1.53195 * 109.58458 * 120.34719 * 2 1 3 5 5 C 1.53038 * 109.31050 * 174.42513 * 4 2 1 6 6 H 1.09007 * 109.46020 * 178.61596 * 5 4 2 7 7 N 1.46501 * 109.46197 * 58.66056 * 5 4 2 8 8 C 1.36941 * 120.00254 * 154.93378 * 7 5 4 9 9 H 1.07995 * 120.00029 * 359.97438 * 8 7 5 10 10 C 1.38809 * 119.99758 * 179.97438 * 8 7 5 11 11 N 1.31614 * 120.00185 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99831 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47057 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47001 * 120.00040 * 12 10 8 15 15 H 1.48500 * 109.47147 * 240.00037 * 12 10 8 16 16 C 1.53036 * 109.54158 * 298.63596 * 5 4 2 17 17 C 1.53197 * 109.31134 * 61.36381 * 16 5 4 18 18 N 1.46918 * 109.59173 * 239.64017 * 2 1 3 19 19 C 1.34779 * 120.63043 * 6.57909 * 18 2 1 20 20 O 1.21484 * 119.99841 * 349.34620 * 19 18 2 21 21 C 1.48433 * 120.00146 * 169.33664 * 19 18 2 22 22 N 1.33494 * 119.22084 * 351.59837 * 21 19 18 23 23 N 1.28915 * 122.02405 * 179.68890 * 22 21 19 24 24 C 1.33819 * 119.74372 * 0.56679 * 23 22 21 25 25 C 1.40330 * 121.78205 * 179.70251 * 24 23 22 26 26 C 1.36191 * 119.62625 * 180.02562 * 25 24 23 27 27 C 1.39439 * 121.07121 * 359.97438 * 26 25 24 28 28 C 1.36130 * 121.01293 * 0.02562 * 27 26 25 29 29 C 1.40507 * 119.56553 * 359.97438 * 28 27 26 30 30 N 1.32062 * 119.21977 * 171.85817 * 21 19 18 31 31 H 1.09006 * 109.46752 * 175.38310 * 1 2 3 32 32 H 1.08993 * 109.47140 * 295.38317 * 1 2 3 33 33 H 1.08996 * 109.47122 * 55.38643 * 1 2 3 34 34 H 1.08999 * 109.50150 * 294.37725 * 4 2 1 35 35 H 1.08999 * 109.49725 * 54.44433 * 4 2 1 36 36 H 0.97001 * 119.99729 * 334.92374 * 7 5 4 37 37 H 0.97003 * 120.00427 * 180.02562 * 11 10 8 38 38 H 1.09005 * 109.50138 * 301.41615 * 16 5 4 39 39 H 1.09002 * 109.50054 * 181.31677 * 16 5 4 40 40 H 1.09004 * 109.58552 * 65.15574 * 17 16 5 41 41 H 1.09004 * 109.58545 * 185.43615 * 17 16 5 42 42 H 1.08003 * 120.18674 * 0.02562 * 25 24 23 43 43 H 1.08001 * 119.46220 * 179.97438 * 26 25 24 44 44 H 1.08000 * 119.49067 * 179.97438 * 27 26 25 45 45 H 1.08009 * 120.21588 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7292 1.2456 5 6 3.5674 -0.8478 1.1703 6 1 3.9378 -1.3445 2.0672 7 7 4.1570 0.4900 1.0751 8 6 5.4409 0.7044 1.5004 9 1 6.0188 -0.1127 1.9064 10 6 5.9996 1.9718 1.4097 11 7 5.2955 2.9674 0.9144 12 14 7.7507 2.2644 1.9905 13 1 8.3220 0.9922 2.5008 14 1 8.5730 2.7557 0.8557 15 1 7.7494 3.2777 3.0760 16 6 3.9570 -1.6656 -0.0631 17 6 3.4651 -0.9469 -1.3235 18 7 2.0227 -0.6996 -1.1943 19 6 1.1675 -1.1072 -2.1530 20 8 -0.0302 -1.0743 -1.9526 21 6 1.6891 -1.5960 -3.4539 22 7 2.9904 -1.4688 -3.7235 23 7 3.5019 -1.8796 -4.8332 24 6 2.7159 -2.4431 -5.7582 25 6 3.2263 -2.8995 -6.9831 26 6 2.3863 -3.4658 -7.8933 27 6 1.0240 -3.6010 -7.6288 28 6 0.4919 -3.1703 -6.4521 29 6 1.3270 -2.5808 -5.4882 30 7 0.8541 -2.1417 -4.3193 31 1 -0.3633 -1.0244 -0.0827 32 1 -0.3633 0.4405 0.9284 33 1 -0.3633 0.5837 -0.8457 34 1 1.7659 -0.1666 2.1369 35 1 1.6025 -1.7250 1.2918 36 1 3.6379 1.2239 0.7106 37 1 5.6860 3.8531 0.8506 38 1 3.4984 -2.6528 -0.0049 39 1 5.0413 -1.7694 -0.1033 40 1 3.9904 0.0021 -1.4315 41 1 3.6543 -1.5708 -2.1971 42 1 4.2793 -2.8023 -7.2027 43 1 2.7819 -3.8158 -8.8354 44 1 0.3809 -4.0536 -8.3691 45 1 -0.5652 -3.2818 -6.2605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044685953.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:56 Heat of formation + Delta-G solvation = 96.906791 kcal Electronic energy + Delta-G solvation = -29863.544793 eV Core-core repulsion = 25883.127394 eV Total energy + Delta-G solvation = -3980.417400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.30929 -41.59208 -39.23727 -38.90863 -36.54509 -35.91360 -34.44690 -33.68589 -32.75725 -31.95861 -30.88008 -28.58102 -27.67868 -26.74423 -25.74447 -25.16304 -23.68538 -23.50157 -22.18046 -20.62849 -20.41421 -19.58390 -19.20480 -17.97040 -17.54889 -17.29354 -17.07353 -16.69912 -16.08320 -16.06424 -15.73295 -15.62144 -15.44866 -15.28655 -14.87442 -14.58970 -14.28406 -13.93422 -13.74259 -13.63588 -13.50259 -13.43032 -13.12797 -13.06402 -12.96559 -12.89194 -12.76829 -12.55828 -12.38643 -12.06460 -12.02037 -11.71294 -11.54777 -11.40592 -10.94314 -10.77268 -10.44156 -10.37775 -9.85428 -9.62096 -8.94179 -7.88657 -5.15932 -1.46330 -1.12209 0.51110 1.02035 1.40403 1.49480 1.50004 1.59506 1.86631 2.23636 2.56630 2.60167 2.65251 2.79751 3.22544 3.45019 3.51745 3.72532 3.84892 3.89501 3.97673 4.03161 4.08249 4.18907 4.33095 4.37448 4.42917 4.47452 4.61087 4.69495 4.80708 4.81634 4.90307 4.99031 5.02398 5.03860 5.12259 5.17158 5.17759 5.27112 5.33112 5.40019 5.50749 5.59082 5.62575 5.69582 6.20519 6.33145 6.75192 6.99308 7.40029 8.15339 8.39186 9.35010 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.003107 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.145683 B = 9009.665511 C =10381.562334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.145 3.855 3 H 0.061 0.939 4 C -0.121 4.121 5 C 0.167 3.833 6 H 0.054 0.946 7 N -0.730 5.730 8 C -0.228 4.228 9 H 0.077 0.923 10 C -0.076 4.076 11 N -0.970 5.970 12 Si 0.967 3.033 13 H -0.266 1.266 14 H -0.298 1.298 15 H -0.297 1.297 16 C -0.140 4.140 17 C 0.101 3.899 18 N -0.572 5.572 19 C 0.582 3.418 20 O -0.524 6.524 21 C 0.196 3.804 22 N -0.249 5.249 23 N -0.171 5.171 24 C 0.011 3.989 25 C -0.082 4.082 26 C -0.061 4.061 27 C -0.039 4.039 28 C -0.107 4.107 29 C 0.113 3.887 30 N -0.420 5.420 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.373 0.627 37 H 0.248 0.752 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.127 0.873 42 H 0.168 0.832 43 H 0.195 0.805 44 H 0.195 0.805 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.410 -17.978 -20.535 28.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.043 3.957 3 H 0.078 0.922 4 C -0.160 4.160 5 C 0.058 3.942 6 H 0.072 0.928 7 N -0.371 5.371 8 C -0.360 4.360 9 H 0.095 0.905 10 C -0.268 4.268 11 N -0.621 5.621 12 Si 0.797 3.203 13 H -0.190 1.190 14 H -0.226 1.226 15 H -0.225 1.225 16 C -0.181 4.181 17 C -0.021 4.021 18 N -0.304 5.304 19 C 0.364 3.636 20 O -0.399 6.399 21 C -0.076 4.076 22 N -0.108 5.108 23 N -0.031 5.031 24 C -0.124 4.124 25 C -0.103 4.103 26 C -0.081 4.081 27 C -0.061 4.061 28 C -0.126 4.126 29 C -0.027 4.027 30 N -0.142 5.142 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.206 0.794 37 H 0.056 0.944 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.144 0.856 42 H 0.186 0.814 43 H 0.212 0.788 44 H 0.212 0.788 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.408 -17.547 -19.525 27.886 hybrid contribution 0.619 0.934 0.071 1.123 sum -8.789 -16.612 -19.455 27.050 Atomic orbital electron populations 1.22111 0.91816 1.03396 1.00973 1.21358 0.95809 0.94899 0.83619 0.92153 1.22142 0.95586 1.01455 0.96788 1.20442 0.91845 0.86197 0.95715 0.92827 1.42658 1.13143 1.06207 1.75061 1.19636 0.90799 0.94025 1.31527 0.90520 1.25458 1.01890 0.96072 1.03413 1.69820 1.37949 1.00692 1.53670 0.85156 0.80631 0.77668 0.76823 1.18986 1.22582 1.22501 1.22428 1.01052 0.98509 0.96141 1.22523 0.77577 1.01657 1.00369 1.47997 1.08360 1.54881 1.19158 1.17327 0.85725 0.78815 0.81699 1.90808 1.15231 1.54828 1.79054 1.24383 0.88570 0.97425 0.97220 1.74147 1.11079 1.14264 1.11338 1.74452 1.29944 1.02694 0.96004 1.21562 0.92964 0.99319 0.98540 1.21239 1.03262 0.96783 0.89059 1.21891 0.92747 0.93166 1.00299 1.21907 0.96205 0.92616 0.95352 1.21239 1.01028 0.98045 0.92331 1.20405 0.93139 0.96417 0.92700 1.69042 1.37058 1.06283 1.01807 0.90924 0.91500 0.93301 0.90079 0.89748 0.79407 0.94357 0.91271 0.91568 0.93034 0.85616 0.81403 0.78797 0.78806 0.82106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 7.60 71.98 0.55 -3.59 16 2 C 0.15 5.27 3.19 44.98 0.14 5.41 16 3 H 0.06 2.51 6.64 -2.39 -0.02 2.49 16 4 C -0.12 -4.10 5.07 30.67 0.16 -3.94 16 5 C 0.17 6.54 3.10 45.02 0.14 6.68 16 6 H 0.05 2.09 8.08 -2.38 -0.02 2.07 16 7 N -0.73 -36.08 4.31 -322.82 -1.39 -37.47 16 8 C -0.23 -12.45 9.93 84.03 0.83 -11.62 16 9 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 10 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 11 N -0.97 -59.86 13.06 21.65 0.28 -59.57 16 12 Si 0.97 46.66 29.55 68.60 2.03 48.68 16 13 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 14 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 15 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 16 C -0.14 -5.09 5.78 30.67 0.18 -4.91 16 17 C 0.10 3.87 5.53 86.36 0.48 4.34 16 18 N -0.57 -21.26 2.97 -797.74 -2.37 -23.63 16 19 C 0.58 21.90 7.59 86.96 0.66 22.56 16 20 O -0.52 -20.73 12.33 -3.67 -0.05 -20.78 16 21 C 0.20 6.91 7.46 137.46 1.03 7.94 16 22 N -0.25 -8.64 7.35 -52.35 -0.38 -9.02 16 23 N -0.17 -5.14 11.68 -51.80 -0.61 -5.75 16 24 C 0.01 0.25 6.68 40.32 0.27 0.52 16 25 C -0.08 -0.97 10.00 22.30 0.22 -0.75 16 26 C -0.06 -0.21 9.95 22.08 0.22 0.01 16 27 C -0.04 -0.15 9.95 22.07 0.22 0.07 16 28 C -0.11 -1.41 10.01 22.33 0.22 -1.19 16 29 C 0.11 2.70 6.61 40.42 0.27 2.96 16 30 N -0.42 -13.39 10.23 -182.37 -1.87 -15.26 16 31 H 0.07 2.45 6.51 -2.38 -0.02 2.43 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.05 1.73 7.00 -2.39 -0.02 1.72 16 34 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.37 20.03 6.06 -92.71 -0.56 19.46 16 37 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 38 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 39 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.05 2.33 7.74 -2.39 -0.02 2.31 16 41 H 0.13 4.63 4.18 -89.05 -0.37 4.26 16 42 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 43 H 0.19 -1.07 8.06 -2.91 -0.02 -1.09 16 44 H 0.19 -1.00 8.06 -2.91 -0.02 -1.02 16 45 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -77.28 362.04 1.81 -75.47 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 0.12 Total: 26.75 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: 6.05 Total: 20.58 kcal Atomic # 7 Polarization: -144.37 SS G_CDS: -6.33 Total: -150.70 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.05 Total: -20.78 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.68 kcal Total: -77.28 1.81 -75.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044685953.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.374 kcal (2) G-P(sol) polarization free energy of solvation -77.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds