Wall clock time and date at job start Sat Apr 11 2020 06:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.70128 * 2 1 4 4 C 1.53191 * 109.59051 * 239.63547 * 2 1 3 5 5 C 1.53041 * 109.31427 * 185.57713 * 4 2 1 6 6 H 1.09003 * 109.46239 * 301.36180 * 5 4 2 7 7 N 1.46495 * 109.46009 * 181.39008 * 5 4 2 8 8 C 1.36940 * 120.00135 * 154.97558 * 7 5 4 9 9 H 1.08003 * 119.99617 * 0.02562 * 8 7 5 10 10 C 1.38810 * 119.99894 * 179.97438 * 8 7 5 11 11 N 1.31624 * 119.99763 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00151 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47175 * 89.99975 * 12 10 8 14 14 H 1.48493 * 109.46987 * 329.99461 * 12 10 8 15 15 H 1.48498 * 109.47052 * 209.99921 * 12 10 8 16 16 C 1.53041 * 109.52421 * 61.37299 * 5 4 2 17 17 C 1.53195 * 109.31520 * 298.61599 * 16 5 4 18 18 N 1.46925 * 108.76525 * 54.65471 * 17 16 5 19 19 C 1.34771 * 120.62770 * 126.36297 * 18 17 16 20 20 O 1.21489 * 119.99583 * 183.70564 * 19 18 17 21 21 C 1.48429 * 120.00367 * 3.70968 * 19 18 17 22 22 N 1.33489 * 119.22226 * 32.19444 * 21 19 18 23 23 N 1.28923 * 122.03073 * 180.02562 * 22 21 19 24 24 C 1.33815 * 119.73990 * 0.02562 * 23 22 21 25 25 C 1.40336 * 121.78242 * 180.02562 * 24 23 22 26 26 C 1.36187 * 119.62667 * 180.02562 * 25 24 23 27 27 C 1.39445 * 121.07269 * 359.95166 * 26 25 24 28 28 C 1.36133 * 121.01086 * 0.02798 * 27 26 25 29 29 C 1.40509 * 119.56431 * 359.97438 * 28 27 26 30 30 N 1.32059 * 119.22119 * 211.92691 * 21 19 18 31 31 H 1.08997 * 109.46978 * 183.32781 * 1 2 3 32 32 H 1.08993 * 109.47281 * 303.33787 * 1 2 3 33 33 H 1.08997 * 109.47018 * 63.33532 * 1 2 3 34 34 H 1.09007 * 109.49525 * 65.63017 * 4 2 1 35 35 H 1.08996 * 109.49541 * 305.53310 * 4 2 1 36 36 H 0.97001 * 120.00184 * 334.97233 * 7 5 4 37 37 H 0.96997 * 119.99593 * 180.02562 * 11 10 8 38 38 H 1.08995 * 109.49790 * 58.58138 * 16 5 4 39 39 H 1.09000 * 109.49457 * 178.67826 * 16 5 4 40 40 H 1.09007 * 109.59453 * 294.86770 * 17 16 5 41 41 H 1.08996 * 109.70265 * 174.50495 * 17 16 5 42 42 H 1.08003 * 120.18716 * 359.96758 * 25 24 23 43 43 H 1.07998 * 119.46466 * 179.97438 * 26 25 24 44 44 H 1.07997 * 119.49269 * 179.97438 * 27 26 25 45 45 H 1.08003 * 120.22106 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7296 -1.2453 5 6 3.5676 -0.8481 -1.1699 6 1 4.0062 0.1473 -1.0989 7 7 4.0653 -1.5159 -2.3750 8 6 5.3497 -1.2985 -2.7974 9 1 5.9958 -0.6350 -2.2417 10 6 5.8214 -1.9317 -3.9390 11 7 7.0561 -1.7232 -4.3446 12 14 4.7041 -3.0799 -4.8996 13 1 3.9700 -2.3063 -5.9330 14 1 3.7326 -3.7147 -3.9732 15 1 5.5216 -4.1314 -5.5562 16 6 3.9566 -1.6658 0.0638 17 6 3.4649 -0.9468 1.3240 18 7 2.0225 -0.6994 1.1946 19 6 1.1673 -1.1067 2.1533 20 8 -0.0290 -0.9566 2.0039 21 6 1.6869 -1.7386 3.3918 22 7 2.8731 -1.3564 3.8702 23 7 3.3761 -1.8692 4.9408 24 6 2.7010 -2.8151 5.6042 25 6 3.2077 -3.4020 6.7739 26 6 2.4837 -4.3616 7.4138 27 6 1.2434 -4.7722 6.9265 28 6 0.7187 -4.2261 5.7952 29 6 1.4364 -3.2332 5.1073 30 7 0.9625 -2.6619 3.9973 31 1 -0.3633 -1.0259 0.0597 32 1 -0.3633 0.5647 0.8585 33 1 -0.3633 0.4612 -0.9183 34 1 1.7661 -0.1670 -2.1368 35 1 1.6030 -1.7254 -1.2910 36 1 3.4852 -2.1122 -2.8739 37 1 7.3856 -2.1654 -5.1426 38 1 3.4979 -2.6528 0.0056 39 1 5.0409 -1.7698 0.1042 40 1 3.9902 0.0023 1.4318 41 1 3.6519 -1.5694 2.1989 42 1 4.1669 -3.0949 7.1640 43 1 2.8763 -4.8117 8.3136 44 1 0.6910 -5.5356 7.4541 45 1 -0.2433 -4.5534 5.4293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044685955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:14 Heat of formation + Delta-G solvation = 111.169278 kcal Electronic energy + Delta-G solvation = -29427.126983 eV Core-core repulsion = 25447.328051 eV Total energy + Delta-G solvation = -3979.798932 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.47837 -40.47175 -38.53280 -37.59693 -35.67449 -34.72528 -33.34141 -32.04294 -31.95297 -31.31203 -29.84241 -27.36552 -26.86622 -25.88225 -24.34493 -23.09191 -22.70340 -22.44893 -20.72199 -19.95830 -19.71153 -18.85764 -17.62468 -17.15938 -16.69345 -16.43640 -16.00669 -15.49858 -15.08973 -14.86380 -14.84219 -14.47385 -14.15550 -13.82855 -13.43831 -13.36952 -13.13068 -13.00773 -12.77940 -12.59919 -12.53077 -12.37295 -12.33135 -12.21615 -11.91358 -11.83957 -11.36609 -11.01927 -10.94960 -10.85012 -10.53808 -10.30891 -10.08555 -9.90251 -9.82556 -9.60086 -9.29820 -9.24782 -8.92886 -8.57142 -7.29383 -5.78512 -3.14275 -0.73734 -0.31068 1.14472 1.86709 2.36615 2.61413 3.12817 3.36909 3.38020 3.40213 3.41151 3.44798 3.57344 3.94543 4.14973 4.38269 4.48751 4.57959 4.60926 4.92380 4.94772 5.00835 5.17845 5.18549 5.26908 5.33723 5.39046 5.42804 5.54904 5.58468 5.62752 5.77699 5.86265 5.89258 5.93031 6.00981 6.10496 6.21877 6.29910 6.35157 6.37419 6.44913 6.63801 6.78985 6.93119 7.26524 7.75459 7.96899 7.97417 8.40624 9.18708 9.91480 10.11182 11.39704 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014432 B = 0.002814 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.732717 B = 9949.506305 C =10870.324063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.149 3.851 3 H 0.082 0.918 4 C -0.140 4.140 5 C 0.183 3.817 6 H 0.060 0.940 7 N -0.748 5.748 8 C -0.243 4.243 9 H 0.091 0.909 10 C 0.005 3.995 11 N -0.933 5.933 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.278 1.278 15 H -0.292 1.292 16 C -0.153 4.153 17 C 0.103 3.897 18 N -0.578 5.578 19 C 0.589 3.411 20 O -0.503 6.503 21 C 0.223 3.777 22 N -0.224 5.224 23 N -0.144 5.144 24 C 0.018 3.982 25 C -0.065 4.065 26 C -0.092 4.092 27 C -0.072 4.072 28 C -0.087 4.087 29 C 0.132 3.868 30 N -0.401 5.401 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.361 0.639 37 H 0.259 0.741 38 H 0.055 0.945 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.152 0.848 43 H 0.145 0.855 44 H 0.146 0.854 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.641 -4.001 25.644 28.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.047 3.953 3 H 0.100 0.900 4 C -0.179 4.179 5 C 0.073 3.927 6 H 0.078 0.922 7 N -0.389 5.389 8 C -0.373 4.373 9 H 0.109 0.891 10 C -0.191 4.191 11 N -0.581 5.581 12 Si 0.714 3.286 13 H -0.210 1.210 14 H -0.204 1.204 15 H -0.218 1.218 16 C -0.194 4.194 17 C -0.020 4.020 18 N -0.310 5.310 19 C 0.371 3.629 20 O -0.376 6.376 21 C -0.049 4.049 22 N -0.086 5.086 23 N -0.007 5.007 24 C -0.114 4.114 25 C -0.087 4.087 26 C -0.113 4.113 27 C -0.095 4.095 28 C -0.107 4.107 29 C -0.007 4.007 30 N -0.123 5.123 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.193 0.807 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.170 0.830 43 H 0.163 0.837 44 H 0.163 0.837 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.659 -3.112 24.907 28.112 hybrid contribution -0.867 -1.649 -0.301 1.887 sum -13.525 -4.761 24.605 28.478 Atomic orbital electron populations 1.22252 0.92602 1.03751 1.01068 1.21439 0.95610 0.95375 0.82882 0.89982 1.22366 0.97633 1.01074 0.96793 1.20160 0.90701 0.95531 0.86274 0.92194 1.42796 1.13218 1.54828 1.28094 1.19076 0.87667 1.23275 1.07286 0.89082 1.24671 0.96092 1.00088 0.98249 1.69702 1.15063 1.47195 1.26137 0.86564 0.80347 0.81298 0.80392 1.21043 1.20405 1.21798 1.22699 1.02369 0.99628 0.94697 1.22279 0.78247 1.01904 0.99572 1.48061 1.08214 1.55521 1.19243 1.17092 0.85869 0.79026 0.80948 1.90876 1.14561 1.54931 1.77259 1.24643 0.89320 0.93232 0.97745 1.74239 1.09266 1.20160 1.04907 1.74552 1.24302 1.02892 0.98915 1.21001 0.94524 0.97467 0.98422 1.20842 1.00801 0.95101 0.91969 1.21247 0.94185 0.95792 1.00061 1.21266 0.95220 0.98214 0.94751 1.20927 1.00661 0.94375 0.94717 1.19741 0.92624 0.96055 0.92267 1.69112 1.31668 1.05715 1.05811 0.91180 0.91010 0.93209 0.90071 0.91761 0.80656 0.93060 0.92625 0.89859 0.90157 0.89153 0.83039 0.83683 0.83661 0.83116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 7.59 37.16 0.28 -1.61 16 2 C 0.15 2.09 3.49 -67.60 -0.24 1.85 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.14 -2.18 4.84 -26.61 -0.13 -2.31 16 5 C 0.18 3.39 2.73 -67.89 -0.19 3.20 16 6 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 7 N -0.75 -17.32 4.92 -53.39 -0.26 -17.58 16 8 C -0.24 -6.71 10.41 -15.06 -0.16 -6.87 16 9 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 10 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 11 N -0.93 -29.11 13.97 55.49 0.78 -28.34 16 12 Si 0.88 22.11 27.74 -169.99 -4.71 17.39 16 13 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 15 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 16 C -0.15 -2.62 5.66 -26.61 -0.15 -2.77 16 17 C 0.10 1.50 5.84 -3.71 -0.02 1.48 16 18 N -0.58 -8.51 2.97 -166.10 -0.49 -9.00 16 19 C 0.59 9.25 7.54 -12.06 -0.09 9.16 16 20 O -0.50 -8.61 12.41 5.38 0.07 -8.55 16 21 C 0.22 3.33 6.97 -156.57 -1.09 2.24 16 22 N -0.22 -3.19 8.28 32.10 0.27 -2.92 16 23 N -0.14 -1.84 11.68 32.28 0.38 -1.46 16 24 C 0.02 0.20 6.68 -84.71 -0.57 -0.37 16 25 C -0.07 -0.43 10.00 -39.53 -0.40 -0.83 16 26 C -0.09 -0.37 9.95 -39.87 -0.40 -0.77 16 27 C -0.07 -0.31 9.95 -39.89 -0.40 -0.70 16 28 C -0.09 -0.65 10.01 -39.48 -0.40 -1.04 16 29 C 0.13 1.49 6.61 -84.77 -0.56 0.93 16 30 N -0.40 -5.71 10.36 -8.99 -0.09 -5.80 16 31 H 0.07 1.06 6.82 -51.93 -0.35 0.71 16 32 H 0.07 1.02 6.67 -51.93 -0.35 0.68 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.36 8.34 5.66 -40.82 -0.23 8.11 16 37 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.09 1.32 4.67 -51.93 -0.24 1.08 16 42 H 0.15 0.70 8.06 -52.48 -0.42 0.28 16 43 H 0.15 0.12 8.06 -52.49 -0.42 -0.31 16 44 H 0.15 0.15 8.06 -52.49 -0.42 -0.27 16 45 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 LS Contribution 364.33 15.07 5.49 5.49 Total: -1.00 -34.33 364.33 -9.01 -43.34 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.84 Total: 5.80 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -4.58 Total: 1.63 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: 0.57 Total: -65.11 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.07 Total: -8.55 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.71 Total: 17.39 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.33 -9.01 -43.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044685955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.513 kcal (2) G-P(sol) polarization free energy of solvation -34.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds