Wall clock time and date at job start Sat Apr 11 2020 06:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.88880 * 2 1 4 4 C 1.54912 * 111.00796 * 123.88215 * 2 1 3 5 5 N 1.47424 * 104.83319 * 155.08170 * 4 2 1 6 6 C 1.34776 * 125.64837 * 155.90740 * 5 4 2 7 7 O 1.21605 * 119.99852 * 0.02562 * 6 5 4 8 8 C 1.47411 * 120.00259 * 180.02562 * 6 5 4 9 9 C 1.41333 * 126.40719 * 0.02757 * 8 6 5 10 10 N 1.30471 * 108.06506 * 179.97438 * 9 8 6 11 11 N 1.39939 * 108.91945 * 359.97438 * 10 9 8 12 12 C 1.40171 * 125.77737 * 179.97438 * 11 10 9 13 13 C 1.39264 * 120.48221 * 359.97438 * 12 11 10 14 14 C 1.38509 * 118.36573 * 179.97438 * 13 12 11 15 15 C 1.38273 * 119.22877 * 0.02562 * 14 13 12 16 16 N 1.31871 * 120.90905 * 0.02562 * 15 14 13 17 17 C 1.31811 * 121.79375 * 359.70156 * 16 15 14 18 18 C 1.34539 * 108.45278 * 359.72879 * 11 10 9 19 19 C 1.47023 * 108.70235 * 335.87439 * 5 4 2 20 20 C 1.54320 * 107.27576 * 1.05739 * 19 5 4 21 21 H 1.08990 * 110.72081 * 263.83328 * 20 19 5 22 22 N 1.46496 * 110.72131 * 140.55218 * 20 19 5 23 23 C 1.36937 * 120.00105 * 91.48188 * 22 20 19 24 24 H 1.08011 * 119.99816 * 359.97438 * 23 22 20 25 25 C 1.38809 * 120.00719 * 179.97438 * 23 22 20 26 26 N 1.31622 * 119.99432 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00509 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46634 * 60.00336 * 27 25 23 29 29 H 1.48505 * 109.47496 * 179.97438 * 27 25 23 30 30 H 1.48495 * 109.47334 * 300.00675 * 27 25 23 31 31 H 1.09002 * 109.47153 * 297.56874 * 1 2 3 32 32 H 1.09001 * 109.46832 * 177.57065 * 1 2 3 33 33 H 1.09004 * 109.47261 * 57.57047 * 1 2 3 34 34 H 1.08992 * 110.36777 * 273.92592 * 4 2 1 35 35 H 1.09005 * 110.36251 * 36.13876 * 4 2 1 36 36 H 1.08002 * 125.96462 * 0.03717 * 9 8 6 37 37 H 1.08000 * 120.81784 * 359.97438 * 13 12 11 38 38 H 1.07992 * 120.38569 * 180.02562 * 14 13 12 39 39 H 1.08000 * 119.54525 * 179.97438 * 15 14 13 40 40 H 1.08001 * 119.66418 * 180.28836 * 17 16 15 41 41 H 1.07995 * 126.30940 * 180.25743 * 18 11 10 42 42 H 1.09006 * 109.88301 * 120.47721 * 19 5 4 43 43 H 1.09003 * 109.88253 * 241.48112 * 19 5 4 44 44 H 0.97005 * 120.00849 * 271.48063 * 22 20 19 45 45 H 0.97002 * 120.00046 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0853 -0.8062 1.2006 5 7 3.4272 -1.2428 0.7737 6 6 4.4477 -1.5610 1.5944 7 8 4.3003 -1.4995 2.7999 8 6 5.7427 -1.9836 1.0308 9 6 6.0620 -2.1016 -0.3409 10 7 7.3008 -2.5003 -0.4350 11 7 7.8271 -2.6539 0.8525 12 6 9.1299 -3.0689 1.1612 13 6 10.0338 -3.3722 0.1461 14 6 11.3099 -3.7774 0.5008 15 6 11.6420 -3.8675 1.8400 16 7 10.7620 -3.5740 2.7773 17 6 9.5393 -3.1795 2.4829 18 6 6.8727 -2.3308 1.7441 19 6 3.4674 -1.2743 -0.6957 20 6 2.0861 -0.8083 -1.2020 21 1 1.4468 -1.6636 -1.4204 22 7 2.2286 0.0488 -2.3815 23 6 2.1999 -0.5013 -3.6352 24 1 2.0726 -1.5672 -3.7544 25 6 2.3344 0.3108 -4.7529 26 7 2.4900 1.6097 -4.6076 27 14 2.2959 -0.4398 -6.4630 28 1 0.9961 -1.1266 -6.6729 29 1 2.4584 0.6321 -7.4779 30 1 3.4019 -1.4215 -6.5977 31 1 -0.3633 0.4756 0.9110 32 1 -0.3633 -1.0268 -0.0436 33 1 -0.3634 0.5511 -0.8674 34 1 2.1560 -0.1713 2.0837 35 1 1.4509 -1.6689 1.4042 36 1 5.3971 -1.8966 -1.1669 37 1 9.7469 -3.2933 -0.8921 38 1 12.0371 -4.0202 -0.2598 39 1 12.6354 -4.1833 2.1223 40 1 8.8477 -2.9434 3.2782 41 1 6.9713 -2.3440 2.8194 42 1 4.2426 -0.6000 -1.0599 43 1 3.6678 -2.2892 -1.0393 44 1 2.3433 1.0061 -2.2746 45 1 2.5843 2.1772 -5.3886 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054740129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:41 Heat of formation + Delta-G solvation = 91.190759 kcal Electronic energy + Delta-G solvation = -28646.507442 eV Core-core repulsion = 24665.842177 eV Total energy + Delta-G solvation = -3980.665265 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.98393 -41.22913 -40.63380 -38.79846 -35.84789 -35.36498 -33.89160 -33.41224 -32.51315 -31.57809 -30.64273 -29.18951 -27.63806 -25.97267 -25.22267 -25.07013 -23.69769 -22.41631 -22.05885 -21.30743 -20.64112 -19.32004 -19.06449 -18.09510 -17.65727 -17.29768 -17.10280 -16.79253 -16.54070 -16.14021 -16.03578 -15.50878 -15.30982 -15.12258 -14.81218 -14.64512 -14.50565 -14.32368 -14.12085 -13.89550 -13.66350 -13.26547 -13.22014 -12.93730 -12.81976 -12.79332 -12.42331 -12.21810 -12.07102 -11.99606 -11.96524 -11.64750 -11.41202 -11.08382 -10.87008 -10.86067 -10.73416 -10.43072 -9.67581 -9.41757 -9.01916 -7.90831 -5.20072 -0.58675 0.03428 0.63881 0.97827 1.02198 1.52746 1.53615 1.59364 1.97635 2.28638 2.59717 2.66196 3.10687 3.27932 3.40506 3.50542 3.51904 3.65157 3.79770 3.85961 3.86979 3.91955 3.93867 4.19312 4.25275 4.28187 4.35383 4.39764 4.52980 4.54695 4.64299 4.74864 4.85443 4.90422 4.92802 4.98436 5.11047 5.15998 5.16807 5.31393 5.36565 5.37363 5.53261 5.59542 5.77380 6.23070 6.29488 6.49568 6.74134 7.10842 7.37833 8.09721 8.33342 9.31794 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011147 B = 0.002808 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.290313 B = 9968.579658 C =12211.578650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.105 4.105 3 H 0.070 0.930 4 C 0.119 3.881 5 N -0.607 5.607 6 C 0.607 3.393 7 O -0.583 6.583 8 C -0.291 4.291 9 C 0.084 3.916 10 N -0.311 5.311 11 N -0.310 5.310 12 C 0.078 3.922 13 C -0.083 4.083 14 C -0.136 4.136 15 C 0.092 3.908 16 N -0.478 5.478 17 C 0.087 3.913 18 C 0.135 3.865 19 C 0.077 3.923 20 C 0.171 3.829 21 H 0.076 0.924 22 N -0.720 5.720 23 C -0.238 4.238 24 H 0.082 0.918 25 C -0.069 4.069 26 N -0.967 5.967 27 Si 0.965 3.035 28 H -0.279 1.279 29 H -0.302 1.302 30 H -0.278 1.278 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.211 0.789 37 H 0.146 0.854 38 H 0.180 0.820 39 H 0.198 0.802 40 H 0.178 0.822 41 H 0.220 0.780 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.375 0.625 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.127 -11.331 13.698 22.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.125 4.125 3 H 0.089 0.911 4 C -0.003 4.003 5 N -0.338 5.338 6 C 0.398 3.602 7 O -0.466 6.466 8 C -0.305 4.305 9 C -0.104 4.104 10 N -0.129 5.129 11 N -0.082 5.082 12 C -0.015 4.015 13 C -0.110 4.110 14 C -0.156 4.156 15 C -0.065 4.065 16 N -0.186 5.186 17 C -0.072 4.072 18 C -0.013 4.013 19 C -0.048 4.048 20 C 0.060 3.940 21 H 0.094 0.906 22 N -0.358 5.358 23 C -0.369 4.369 24 H 0.100 0.900 25 C -0.262 4.262 26 N -0.617 5.617 27 Si 0.795 3.205 28 H -0.205 1.205 29 H -0.229 1.229 30 H -0.204 1.204 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.227 0.773 37 H 0.164 0.836 38 H 0.197 0.803 39 H 0.215 0.785 40 H 0.195 0.805 41 H 0.237 0.763 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.208 0.792 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 14.346 -11.853 14.283 23.459 hybrid contribution -0.998 0.755 -1.737 2.141 sum 13.348 -11.099 12.546 21.418 Atomic orbital electron populations 1.21552 0.92349 1.02575 1.01964 1.22564 0.97512 0.98813 0.93645 0.91135 1.22320 0.81943 0.98717 0.97324 1.48227 1.12424 1.65717 1.07440 1.16938 0.82219 0.76295 0.84784 1.90722 1.83775 1.57184 1.14909 1.20249 0.96381 1.20428 0.93468 1.25192 0.92983 0.94546 0.97631 1.77275 1.11785 1.24694 0.99124 1.45710 1.09042 1.48646 1.04785 1.19004 0.82156 1.03684 0.96697 1.21644 0.93289 0.96242 0.99864 1.22506 0.95790 0.98245 0.99032 1.23550 1.00021 0.94221 0.88730 1.67860 1.01688 1.10823 1.38235 1.22845 0.94514 0.97368 0.92510 1.23377 0.86321 0.93426 0.98207 1.23332 1.01930 1.01220 0.78353 1.21467 0.92379 0.93829 0.86316 0.90630 1.42466 1.86424 1.06161 1.00778 1.19591 1.40215 0.92916 0.84211 0.89994 1.25461 1.03626 0.95820 1.01267 1.69801 1.58395 1.04079 1.29455 0.85338 0.78152 0.76785 0.80234 1.20470 1.22878 1.20404 0.90925 0.91539 0.93497 0.90538 0.89762 0.77324 0.83633 0.80284 0.78528 0.80506 0.76321 0.91847 0.90663 0.79246 0.94179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 9.29 71.98 0.67 -2.56 16 2 C -0.11 -3.08 3.27 -9.40 -0.03 -3.11 16 3 H 0.07 2.27 8.01 -2.39 -0.02 2.25 16 4 C 0.12 3.24 6.38 86.86 0.55 3.80 16 5 N -0.61 -18.46 3.33 -815.67 -2.71 -21.17 16 6 C 0.61 19.46 7.85 86.66 0.68 20.14 16 7 O -0.58 -21.01 17.15 -4.05 -0.07 -21.08 16 8 C -0.29 -8.38 6.09 -20.14 -0.12 -8.50 16 9 C 0.08 2.45 10.44 85.66 0.89 3.35 16 10 N -0.31 -9.00 11.85 -56.23 -0.67 -9.67 16 11 N -0.31 -7.61 3.77 -185.91 -0.70 -8.31 16 12 C 0.08 1.59 6.70 38.19 0.26 1.85 16 13 C -0.08 -1.44 9.77 22.58 0.22 -1.22 16 14 C -0.14 -1.47 10.11 22.34 0.23 -1.25 16 15 C 0.09 1.04 11.18 84.70 0.95 1.98 16 16 N -0.48 -7.98 10.35 -195.35 -2.02 -10.00 16 17 C 0.09 1.50 10.61 84.83 0.90 2.40 16 18 C 0.13 3.22 10.62 84.24 0.89 4.11 16 19 C 0.08 2.45 4.74 86.73 0.41 2.86 16 20 C 0.17 5.88 3.08 46.18 0.14 6.02 16 21 H 0.08 2.55 7.96 -2.39 -0.02 2.53 16 22 N -0.72 -32.43 5.15 -317.33 -1.63 -34.07 16 23 C -0.24 -11.96 9.96 84.03 0.84 -11.12 16 24 H 0.08 3.90 7.83 -2.90 -0.02 3.87 16 25 C -0.07 -3.72 5.50 84.86 0.47 -3.26 16 26 N -0.97 -56.43 13.06 21.65 0.28 -56.15 16 27 Si 0.97 43.88 29.55 68.60 2.03 45.91 16 28 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 29 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 30 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.07 1.53 8.11 -2.39 -0.02 1.51 16 33 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.08 2.08 8.04 -2.39 -0.02 2.06 16 35 H 0.08 2.03 8.03 -2.38 -0.02 2.01 16 36 H 0.21 6.05 4.47 -2.91 -0.01 6.04 16 37 H 0.15 2.68 7.77 -2.91 -0.02 2.66 16 38 H 0.18 0.71 8.06 -2.91 -0.02 0.68 16 39 H 0.20 0.79 8.06 -2.91 -0.02 0.77 16 40 H 0.18 2.31 6.74 -2.91 -0.02 2.29 16 41 H 0.22 3.76 7.03 -2.91 -0.02 3.74 16 42 H 0.06 2.22 6.71 -2.38 -0.02 2.20 16 43 H 0.08 2.21 6.99 -2.39 -0.02 2.19 16 44 H 0.38 18.68 7.76 -92.70 -0.72 17.96 16 45 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -69.04 377.30 2.77 -66.28 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: 0.32 Total: 32.78 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 7.95 Total: 15.48 kcal Atomic # 7 Polarization: -131.91 SS G_CDS: -7.45 Total: -139.37 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.07 Total: -21.08 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -69.04 2.77 -66.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054740129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.466 kcal (2) G-P(sol) polarization free energy of solvation -69.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds