Wall clock time and date at job start Sat Apr 11 2020 06:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 110.64246 * 2 1 4 4 C 1.54325 * 110.87209 * 236.74727 * 2 1 3 5 5 N 1.47015 * 107.27065 * 219.37696 * 4 2 1 6 6 C 1.34781 * 125.64697 * 178.89784 * 5 4 2 7 7 O 1.21558 * 120.00121 * 359.97438 * 6 5 4 8 8 C 1.47836 * 119.99883 * 180.02562 * 6 5 4 9 9 N 1.34567 * 126.02371 * 0.02562 * 8 6 5 10 10 C 1.30877 * 107.29008 * 180.02562 * 9 8 6 11 11 N 1.34889 * 107.58591 * 359.97438 * 10 9 8 12 12 C 1.40148 * 125.76575 * 180.02562 * 11 10 9 13 13 C 1.38847 * 120.06606 * 359.72344 * 12 11 10 14 14 C 1.38119 * 119.92694 * 179.72412 * 13 12 11 15 15 C 1.38285 * 120.06933 * 0.55236 * 14 13 12 16 16 C 1.38284 * 120.13315 * 359.72633 * 15 14 13 17 17 C 1.38110 * 120.06771 * 359.97438 * 16 15 14 18 18 N 1.28850 * 108.45802 * 359.73572 * 11 10 9 19 19 C 1.47425 * 108.70882 * 358.94051 * 5 4 2 20 20 C 1.54918 * 104.82827 * 24.12597 * 19 5 4 21 21 H 1.09000 * 110.99891 * 81.06585 * 20 19 5 22 22 N 1.46495 * 111.00632 * 204.91527 * 20 19 5 23 23 C 1.36938 * 120.00108 * 267.20433 * 22 20 19 24 24 H 1.07994 * 120.00244 * 359.97438 * 23 22 20 25 25 C 1.38819 * 119.99632 * 180.02562 * 23 22 20 26 26 N 1.31613 * 119.99985 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 119.99557 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47091 * 90.00149 * 27 25 23 29 29 H 1.48501 * 109.47118 * 209.99367 * 27 25 23 30 30 H 1.48500 * 109.47323 * 329.99808 * 27 25 23 31 31 H 1.09004 * 109.47102 * 296.86222 * 1 2 3 32 32 H 1.09002 * 109.47081 * 56.85923 * 1 2 3 33 33 H 1.08996 * 109.47329 * 176.86111 * 1 2 3 34 34 H 1.09000 * 109.88274 * 338.79535 * 4 2 1 35 35 H 1.08998 * 109.88226 * 99.95580 * 4 2 1 36 36 H 1.07992 * 126.20388 * 180.02562 * 10 9 8 37 37 H 1.07995 * 120.03893 * 359.97438 * 13 12 11 38 38 H 1.08006 * 119.96700 * 180.30035 * 14 13 12 39 39 H 1.07995 * 119.93486 * 179.74591 * 15 14 13 40 40 H 1.08001 * 119.96468 * 180.02562 * 16 15 14 41 41 H 1.08005 * 120.03290 * 179.97438 * 17 16 15 42 42 H 1.08999 * 110.36633 * 265.29871 * 19 5 4 43 43 H 1.08996 * 110.37033 * 142.96251 * 19 5 4 44 44 H 0.97000 * 119.99509 * 87.19464 * 22 20 19 45 45 H 0.96996 * 119.99994 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0799 -0.7907 -1.2059 5 7 3.2493 -1.5471 -0.7352 6 6 3.9994 -2.3799 -1.4839 7 8 3.7271 -2.5557 -2.6554 8 6 5.1527 -3.0803 -0.8799 9 7 5.5606 -2.9769 0.3983 10 6 6.6088 -3.7485 0.5357 11 7 6.8472 -4.3287 -0.6585 12 6 7.8833 -5.2297 -0.9392 13 6 8.7793 -5.5919 0.0578 14 6 9.7959 -6.4845 -0.2205 15 6 9.9289 -7.0083 -1.4934 16 6 9.0416 -6.6450 -2.4898 17 6 8.0192 -5.7577 -2.2161 18 7 5.9576 -3.9192 -1.4958 19 6 3.4652 -1.2448 0.6915 20 6 2.0789 -0.7933 1.2152 21 1 1.4468 -1.6528 1.4384 22 7 2.2174 0.0728 2.3886 23 6 2.1821 -0.4675 3.6464 24 1 2.0516 -1.5320 3.7734 25 6 2.3128 0.3533 4.7582 26 7 2.4712 1.6507 4.6034 27 14 2.2638 -0.3836 6.4740 28 1 3.6397 -0.7526 6.8937 29 1 1.7068 0.6121 7.4246 30 1 1.4062 -1.5959 6.4678 31 1 -0.3633 0.4644 0.9168 32 1 -0.3633 0.5618 -0.8605 33 1 -0.3634 -1.0261 -0.0563 34 1 1.3190 -1.4774 -1.5770 35 1 2.3775 -0.1017 -1.9963 36 1 7.1788 -3.8948 1.4412 37 1 8.6790 -5.1794 1.0508 38 1 10.4903 -6.7704 0.5557 39 1 10.7271 -7.7029 -1.7096 40 1 9.1477 -7.0561 -3.4828 41 1 7.3267 -5.4739 -2.9949 42 1 4.1929 -0.4410 0.8030 43 1 3.7991 -2.1365 1.2219 44 1 2.3343 1.0289 2.2745 45 1 2.5630 2.2242 5.3803 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054764121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:25:37 Heat of formation + Delta-G solvation = 118.035834 kcal Electronic energy + Delta-G solvation = -28687.170173 eV Core-core repulsion = 24707.668997 eV Total energy + Delta-G solvation = -3979.501175 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -43.79877 -39.86626 -39.45029 -37.46730 -34.87193 -34.03173 -32.50582 -32.30535 -31.34688 -30.67426 -29.90795 -27.48358 -26.80231 -24.55496 -24.33080 -23.79433 -22.43590 -21.67894 -21.23603 -19.87960 -19.60276 -18.68650 -17.17868 -16.95376 -16.88761 -16.54187 -16.16686 -15.64738 -15.28772 -14.99522 -14.60584 -14.51771 -14.04359 -13.95339 -13.53475 -13.40394 -13.08668 -12.89918 -12.69227 -12.64481 -12.48755 -12.18573 -11.84254 -11.57785 -11.52999 -11.21529 -11.07658 -10.98386 -10.75045 -10.57124 -10.39476 -10.16386 -10.11311 -10.10152 -9.84401 -9.69264 -9.58462 -8.94331 -8.88838 -8.30390 -7.02296 -5.80305 -3.09967 0.25899 0.76744 1.57831 1.87210 2.06656 3.00654 3.22561 3.42011 3.44690 3.47737 3.49078 3.95319 4.06114 4.28161 4.45036 4.51172 4.59412 4.62653 4.78874 4.90602 5.06043 5.09658 5.22652 5.28794 5.42161 5.60315 5.64389 5.70892 5.72344 5.81201 5.86045 5.92777 5.94680 5.99424 6.10458 6.12329 6.19262 6.31440 6.34160 6.49133 6.53377 6.58399 6.66282 6.79891 6.96368 7.66636 7.69705 7.84149 8.29123 8.37558 9.49299 10.03496 10.38862 11.41878 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011406 B = 0.002812 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.165346 B = 9954.134618 C =12164.984642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 H 0.085 0.915 4 C 0.119 3.881 5 N -0.591 5.591 6 C 0.623 3.377 7 O -0.533 6.533 8 C 0.164 3.836 9 N -0.458 5.458 10 C 0.196 3.804 11 N -0.256 5.256 12 C 0.132 3.868 13 C -0.122 4.122 14 C -0.097 4.097 15 C -0.117 4.117 16 C -0.099 4.099 17 C -0.104 4.104 18 N -0.257 5.257 19 C 0.074 3.926 20 C 0.175 3.825 21 H 0.068 0.932 22 N -0.708 5.708 23 C -0.241 4.241 24 H 0.072 0.928 25 C -0.010 4.010 26 N -0.931 5.931 27 Si 0.907 3.093 28 H -0.289 1.289 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.229 0.771 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.143 0.857 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.387 0.613 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.264 -15.189 -11.669 23.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.136 4.136 3 H 0.103 0.897 4 C -0.003 4.003 5 N -0.324 5.324 6 C 0.406 3.594 7 O -0.408 6.408 8 C -0.116 4.116 9 N -0.182 5.182 10 C -0.098 4.098 11 N -0.045 5.045 12 C 0.041 3.959 13 C -0.143 4.143 14 C -0.115 4.115 15 C -0.135 4.135 16 C -0.118 4.118 17 C -0.124 4.124 18 N -0.093 5.093 19 C -0.051 4.051 20 C 0.063 3.937 21 H 0.086 0.914 22 N -0.347 5.347 23 C -0.372 4.372 24 H 0.090 0.910 25 C -0.206 4.206 26 N -0.579 5.579 27 Si 0.738 3.262 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.207 1.207 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.245 0.755 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.161 0.839 42 H 0.088 0.912 43 H 0.112 0.888 44 H 0.221 0.779 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.794 -15.292 -12.563 23.566 hybrid contribution 0.500 -0.105 1.280 1.378 sum 13.294 -15.397 -11.284 23.262 Atomic orbital electron populations 1.21657 0.93868 1.01524 1.02040 1.22552 0.96485 0.99877 0.94680 0.89685 1.22062 0.86768 0.94342 0.97153 1.48191 1.28764 1.42238 1.13216 1.15819 0.79993 0.78995 0.84551 1.90797 1.70201 1.64463 1.15320 1.23807 0.99513 0.99681 0.88585 1.71661 1.10051 1.20126 1.16353 1.26777 0.96755 0.94173 0.92130 1.44639 1.20324 1.31307 1.08239 1.17685 0.88623 0.93510 0.96038 1.20909 0.95036 0.99774 0.98533 1.21038 0.97201 0.95940 0.97364 1.21361 0.99296 0.99794 0.93081 1.21146 0.93925 0.96653 1.00081 1.21102 0.99255 0.96940 0.95057 1.74334 1.01358 1.14217 1.19397 1.23773 1.01507 1.02332 0.77499 1.21421 0.92136 0.93579 0.86608 0.91439 1.42266 1.86209 1.06153 1.00115 1.19245 1.42275 0.92623 0.83098 0.91008 1.24740 1.02566 0.95425 0.97872 1.69656 1.56367 1.02641 1.29193 0.86198 0.77603 0.77863 0.84556 1.21683 1.21835 1.20723 0.91247 0.93247 0.92915 0.91246 0.91604 0.75506 0.84498 0.84482 0.85064 0.84667 0.83935 0.91244 0.88789 0.77898 0.93446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 9.17 37.16 0.34 -1.60 16 2 C -0.12 -1.88 3.19 -88.78 -0.28 -2.16 16 3 H 0.08 1.40 8.00 -51.93 -0.42 0.99 16 4 C 0.12 1.88 6.47 -3.07 -0.02 1.86 16 5 N -0.59 -10.49 3.33 -171.63 -0.57 -11.06 16 6 C 0.62 11.75 7.86 -12.33 -0.10 11.66 16 7 O -0.53 -11.06 17.41 5.31 0.09 -10.97 16 8 C 0.16 2.87 7.79 -156.31 -1.22 1.65 16 9 N -0.46 -7.39 8.46 -12.29 -0.10 -7.49 16 10 C 0.20 2.39 11.93 -90.20 -1.08 1.31 16 11 N -0.26 -3.28 3.52 -11.77 -0.04 -3.33 16 12 C 0.13 1.32 6.67 -83.60 -0.56 0.76 16 13 C -0.12 -0.84 9.45 -39.40 -0.37 -1.21 16 14 C -0.10 -0.51 10.04 -39.61 -0.40 -0.91 16 15 C -0.12 -0.61 10.04 -39.55 -0.40 -1.01 16 16 C -0.10 -0.64 10.04 -39.61 -0.40 -1.04 16 17 C -0.10 -0.96 9.61 -39.40 -0.38 -1.34 16 18 N -0.26 -4.16 11.32 32.08 0.36 -3.80 16 19 C 0.07 1.39 5.83 -2.52 -0.01 1.37 16 20 C 0.18 3.39 3.16 -65.78 -0.21 3.19 16 21 H 0.07 1.35 8.00 -51.93 -0.42 0.93 16 22 N -0.71 -16.84 5.24 -51.35 -0.27 -17.11 16 23 C -0.24 -6.41 9.96 -15.06 -0.15 -6.56 16 24 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 25 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 26 N -0.93 -27.20 13.06 55.49 0.72 -26.47 16 27 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 30 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.73 8.07 -51.93 -0.42 0.31 16 34 H 0.07 1.04 7.78 -51.93 -0.40 0.64 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.23 1.63 7.01 -52.49 -0.37 1.26 16 37 H 0.14 0.64 6.71 -52.49 -0.35 0.28 16 38 H 0.14 0.39 8.06 -52.48 -0.42 -0.04 16 39 H 0.13 0.37 8.06 -52.49 -0.42 -0.05 16 40 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 41 H 0.14 1.46 7.68 -52.48 -0.40 1.05 16 42 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.09 1.83 6.15 -51.93 -0.32 1.51 16 44 H 0.39 9.79 7.76 -40.82 -0.32 9.48 16 45 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 379.97 15.07 5.73 5.73 Total: -1.00 -33.91 379.97 -10.34 -44.25 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -5.92 Total: 7.90 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -5.32 Total: 5.61 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: 0.10 Total: -69.26 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.91 -10.34 -44.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054764121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.287 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds