Wall clock time and date at job start Sat Apr 11 2020 06:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 110.64246 * 2 1 4 4 C 1.54325 * 110.87209 * 236.74727 * 2 1 3 5 5 N 1.47015 * 107.27065 * 219.37696 * 4 2 1 6 6 C 1.34781 * 125.64697 * 178.89784 * 5 4 2 7 7 O 1.21558 * 120.00121 * 359.97438 * 6 5 4 8 8 C 1.47836 * 119.99883 * 180.02562 * 6 5 4 9 9 N 1.34567 * 126.02371 * 0.02562 * 8 6 5 10 10 C 1.30877 * 107.29008 * 180.02562 * 9 8 6 11 11 N 1.34889 * 107.58591 * 359.97438 * 10 9 8 12 12 C 1.40148 * 125.76575 * 180.02562 * 11 10 9 13 13 C 1.38847 * 120.06606 * 359.72344 * 12 11 10 14 14 C 1.38119 * 119.92694 * 179.72412 * 13 12 11 15 15 C 1.38285 * 120.06933 * 0.55236 * 14 13 12 16 16 C 1.38284 * 120.13315 * 359.72633 * 15 14 13 17 17 C 1.38110 * 120.06771 * 359.97438 * 16 15 14 18 18 N 1.28850 * 108.45802 * 359.73572 * 11 10 9 19 19 C 1.47425 * 108.70882 * 358.94051 * 5 4 2 20 20 C 1.54918 * 104.82827 * 24.12597 * 19 5 4 21 21 H 1.09000 * 110.99891 * 81.06585 * 20 19 5 22 22 N 1.46495 * 111.00632 * 204.91527 * 20 19 5 23 23 C 1.36938 * 120.00108 * 267.20433 * 22 20 19 24 24 H 1.07994 * 120.00244 * 359.97438 * 23 22 20 25 25 C 1.38819 * 119.99632 * 180.02562 * 23 22 20 26 26 N 1.31613 * 119.99985 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 119.99557 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47091 * 90.00149 * 27 25 23 29 29 H 1.48501 * 109.47118 * 209.99367 * 27 25 23 30 30 H 1.48500 * 109.47323 * 329.99808 * 27 25 23 31 31 H 1.09004 * 109.47102 * 296.86222 * 1 2 3 32 32 H 1.09002 * 109.47081 * 56.85923 * 1 2 3 33 33 H 1.08996 * 109.47329 * 176.86111 * 1 2 3 34 34 H 1.09000 * 109.88274 * 338.79535 * 4 2 1 35 35 H 1.08998 * 109.88226 * 99.95580 * 4 2 1 36 36 H 1.07992 * 126.20388 * 180.02562 * 10 9 8 37 37 H 1.07995 * 120.03893 * 359.97438 * 13 12 11 38 38 H 1.08006 * 119.96700 * 180.30035 * 14 13 12 39 39 H 1.07995 * 119.93486 * 179.74591 * 15 14 13 40 40 H 1.08001 * 119.96468 * 180.02562 * 16 15 14 41 41 H 1.08005 * 120.03290 * 179.97438 * 17 16 15 42 42 H 1.08999 * 110.36633 * 265.29871 * 19 5 4 43 43 H 1.08996 * 110.37033 * 142.96251 * 19 5 4 44 44 H 0.97000 * 119.99509 * 87.19464 * 22 20 19 45 45 H 0.96996 * 119.99994 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0799 -0.7907 -1.2059 5 7 3.2493 -1.5471 -0.7352 6 6 3.9994 -2.3799 -1.4839 7 8 3.7271 -2.5557 -2.6554 8 6 5.1527 -3.0803 -0.8799 9 7 5.5606 -2.9769 0.3983 10 6 6.6088 -3.7485 0.5357 11 7 6.8472 -4.3287 -0.6585 12 6 7.8833 -5.2297 -0.9392 13 6 8.7793 -5.5919 0.0578 14 6 9.7959 -6.4845 -0.2205 15 6 9.9289 -7.0083 -1.4934 16 6 9.0416 -6.6450 -2.4898 17 6 8.0192 -5.7577 -2.2161 18 7 5.9576 -3.9192 -1.4958 19 6 3.4652 -1.2448 0.6915 20 6 2.0789 -0.7933 1.2152 21 1 1.4468 -1.6528 1.4384 22 7 2.2174 0.0728 2.3886 23 6 2.1821 -0.4675 3.6464 24 1 2.0516 -1.5320 3.7734 25 6 2.3128 0.3533 4.7582 26 7 2.4712 1.6507 4.6034 27 14 2.2638 -0.3836 6.4740 28 1 3.6397 -0.7526 6.8937 29 1 1.7068 0.6121 7.4246 30 1 1.4062 -1.5959 6.4678 31 1 -0.3633 0.4644 0.9168 32 1 -0.3633 0.5618 -0.8605 33 1 -0.3634 -1.0261 -0.0563 34 1 1.3190 -1.4774 -1.5770 35 1 2.3775 -0.1017 -1.9963 36 1 7.1788 -3.8948 1.4412 37 1 8.6790 -5.1794 1.0508 38 1 10.4903 -6.7704 0.5557 39 1 10.7271 -7.7029 -1.7096 40 1 9.1477 -7.0561 -3.4828 41 1 7.3267 -5.4739 -2.9949 42 1 4.1929 -0.4410 0.8030 43 1 3.7991 -2.1365 1.2219 44 1 2.3343 1.0289 2.2745 45 1 2.5630 2.2242 5.3803 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054764121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:25:27 Heat of formation + Delta-G solvation = 98.481568 kcal Electronic energy + Delta-G solvation = -28688.018109 eV Core-core repulsion = 24707.668997 eV Total energy + Delta-G solvation = -3980.349112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -44.85852 -41.15583 -40.19068 -38.97691 -35.95850 -35.70318 -33.93851 -33.31848 -32.48426 -31.95503 -30.72611 -29.16764 -28.02478 -25.97195 -25.39167 -25.10474 -23.37934 -22.63607 -22.42994 -21.33305 -20.84324 -19.58948 -19.11393 -18.14722 -17.99930 -17.54612 -17.18993 -17.07515 -16.29999 -16.03430 -15.87627 -15.55675 -15.32952 -15.20023 -14.58305 -14.48118 -14.45136 -14.29708 -14.18551 -13.94262 -13.51851 -13.21674 -13.02939 -12.85669 -12.81137 -12.70269 -12.19883 -12.16864 -12.14775 -12.09837 -12.00398 -11.74080 -11.60998 -11.51595 -11.32634 -11.20210 -10.85387 -10.09073 -9.81980 -9.55882 -8.99985 -7.90066 -5.19322 -0.50470 0.26822 0.47791 0.94416 1.10338 1.52509 1.53148 1.61541 1.73587 2.07526 2.59523 2.69639 2.84388 3.11679 3.40913 3.48731 3.65708 3.83359 3.84169 3.86711 3.97928 4.18152 4.19460 4.31267 4.35784 4.40999 4.48397 4.48645 4.62317 4.64459 4.71705 4.90772 4.93614 4.96712 5.00288 5.14141 5.16821 5.21995 5.28277 5.32450 5.36231 5.45233 5.48319 5.54969 5.58723 5.88747 6.22625 6.30727 6.64574 6.93284 7.38339 8.08679 8.34574 9.32838 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011406 B = 0.002812 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.165346 B = 9954.134618 C =12164.984642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.104 4.104 3 H 0.082 0.918 4 C 0.119 3.881 5 N -0.590 5.590 6 C 0.621 3.379 7 O -0.560 6.560 8 C 0.134 3.866 9 N -0.490 5.490 10 C 0.205 3.795 11 N -0.246 5.246 12 C 0.092 3.908 13 C -0.117 4.117 14 C -0.093 4.093 15 C -0.106 4.106 16 C -0.103 4.103 17 C -0.125 4.125 18 N -0.275 5.275 19 C 0.093 3.907 20 C 0.171 3.829 21 H 0.065 0.935 22 N -0.716 5.716 23 C -0.237 4.237 24 H 0.076 0.924 25 C -0.069 4.069 26 N -0.967 5.967 27 Si 0.969 3.031 28 H -0.287 1.287 29 H -0.298 1.298 30 H -0.271 1.271 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.276 0.724 37 H 0.161 0.839 38 H 0.171 0.829 39 H 0.164 0.836 40 H 0.154 0.846 41 H 0.119 0.881 42 H 0.053 0.947 43 H 0.087 0.913 44 H 0.377 0.623 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.130 -17.475 -11.134 25.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.124 4.124 3 H 0.100 0.900 4 C -0.003 4.003 5 N -0.322 5.322 6 C 0.405 3.595 7 O -0.437 6.437 8 C -0.145 4.145 9 N -0.215 5.215 10 C -0.088 4.088 11 N -0.035 5.035 12 C 0.002 3.998 13 C -0.137 4.137 14 C -0.112 4.112 15 C -0.124 4.124 16 C -0.122 4.122 17 C -0.145 4.145 18 N -0.114 5.114 19 C -0.032 4.032 20 C 0.060 3.940 21 H 0.083 0.917 22 N -0.355 5.355 23 C -0.369 4.369 24 H 0.094 0.906 25 C -0.262 4.262 26 N -0.617 5.617 27 Si 0.798 3.202 28 H -0.214 1.214 29 H -0.225 1.225 30 H -0.195 1.195 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.291 0.709 37 H 0.179 0.821 38 H 0.189 0.811 39 H 0.181 0.819 40 H 0.172 0.828 41 H 0.137 0.863 42 H 0.072 0.928 43 H 0.105 0.895 44 H 0.210 0.790 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 14.666 -17.626 -12.056 25.906 hybrid contribution 0.108 0.428 1.015 1.107 sum 14.774 -17.198 -11.041 25.218 Atomic orbital electron populations 1.21612 0.92235 1.02376 1.02258 1.22453 0.97745 0.99170 0.93000 0.89994 1.22179 0.86435 0.94574 0.97067 1.48182 1.29169 1.42201 1.12657 1.16042 0.80307 0.78812 0.84297 1.90759 1.71166 1.65486 1.16316 1.23541 1.00186 1.01223 0.89537 1.71559 1.11958 1.22014 1.15937 1.27584 0.95706 0.92423 0.93080 1.44829 1.19875 1.30886 1.07888 1.18137 0.89387 0.94816 0.97468 1.21281 0.94203 0.99461 0.98744 1.21508 0.96773 0.94640 0.98252 1.21815 0.98956 0.99033 0.92570 1.21410 0.93253 0.95888 1.01612 1.21127 1.00231 0.98465 0.94671 1.74245 1.02057 1.14307 1.20749 1.23366 1.00340 1.01349 0.78146 1.21538 0.92564 0.93423 0.86493 0.91733 1.42339 1.86366 1.06083 1.00669 1.19574 1.40307 0.92792 0.84227 0.90615 1.25480 1.03483 0.95832 1.01371 1.69805 1.58402 1.03834 1.29661 0.85209 0.77594 0.77189 0.80176 1.21383 1.22531 1.19545 0.93128 0.90584 0.92058 0.90021 0.90468 0.70866 0.82127 0.81147 0.81890 0.82840 0.86268 0.92849 0.89456 0.79035 0.94067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.55 9.17 71.98 0.66 -2.89 16 2 C -0.10 -3.32 3.19 -9.60 -0.03 -3.35 16 3 H 0.08 2.70 8.00 -2.39 -0.02 2.68 16 4 C 0.12 3.69 6.47 86.73 0.56 4.25 16 5 N -0.59 -21.28 3.33 -815.20 -2.71 -23.99 16 6 C 0.62 24.18 7.86 86.78 0.68 24.86 16 7 O -0.56 -23.99 17.41 -3.90 -0.07 -24.06 16 8 C 0.13 4.85 7.79 137.10 1.07 5.92 16 9 N -0.49 -15.99 8.46 -192.79 -1.63 -17.63 16 10 C 0.21 4.81 11.93 180.20 2.15 6.96 16 11 N -0.25 -6.30 3.52 -191.15 -0.67 -6.97 16 12 C 0.09 1.74 6.67 38.10 0.25 2.00 16 13 C -0.12 -1.27 9.45 22.39 0.21 -1.06 16 14 C -0.09 -0.61 10.04 22.25 0.22 -0.38 16 15 C -0.11 -0.71 10.04 22.29 0.22 -0.49 16 16 C -0.10 -1.15 10.04 22.25 0.22 -0.93 16 17 C -0.13 -2.32 9.61 22.39 0.22 -2.10 16 18 N -0.28 -9.27 11.32 -52.42 -0.59 -9.86 16 19 C 0.09 3.57 5.83 86.86 0.51 4.08 16 20 C 0.17 6.67 3.16 46.39 0.15 6.82 16 21 H 0.06 2.57 8.00 -2.39 -0.02 2.56 16 22 N -0.72 -34.57 5.24 -316.37 -1.66 -36.23 16 23 C -0.24 -12.65 9.96 84.04 0.84 -11.81 16 24 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 25 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 26 N -0.97 -57.46 13.06 21.65 0.28 -57.18 16 27 Si 0.97 44.87 29.55 68.60 2.03 46.90 16 28 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 29 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 30 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.06 1.60 8.07 -2.39 -0.02 1.58 16 34 H 0.08 2.36 7.78 -2.39 -0.02 2.34 16 35 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.28 3.14 7.01 -2.91 -0.02 3.12 16 37 H 0.16 0.86 6.71 -2.91 -0.02 0.84 16 38 H 0.17 0.01 8.06 -2.91 -0.02 -0.01 16 39 H 0.16 0.09 8.06 -2.91 -0.02 0.07 16 40 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 41 H 0.12 2.67 7.68 -2.91 -0.02 2.65 16 42 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.09 3.48 6.15 -2.39 -0.01 3.46 16 44 H 0.38 19.56 7.76 -92.71 -0.72 18.84 16 45 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -76.53 379.97 3.68 -72.85 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.31 Total: 27.65 kcal Atomic # 6 Polarization: 20.11 SS G_CDS: 8.40 Total: 28.50 kcal Atomic # 7 Polarization: -144.87 SS G_CDS: -6.99 Total: -151.85 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.07 Total: -24.06 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -76.53 3.68 -72.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054764121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.335 kcal (2) G-P(sol) polarization free energy of solvation -76.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds