Wall clock time and date at job start Sat Apr 11 2020 06:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 110.91685 * 2 1 4 4 C 1.54907 * 111.00459 * 123.89955 * 2 1 3 5 5 N 1.47741 * 104.84668 * 155.17013 * 4 2 1 6 6 C 1.34772 * 125.82584 * 155.82821 * 5 4 2 7 7 O 1.21567 * 120.00333 * 354.23105 * 6 5 4 8 8 C 1.47677 * 119.99723 * 174.23422 * 6 5 4 9 9 C 1.39702 * 120.08297 * 6.97414 * 8 6 5 10 10 C 1.37726 * 119.92136 * 179.74161 * 9 8 6 11 11 C 1.39045 * 120.08005 * 0.51785 * 10 9 8 12 12 N 1.39865 * 119.91898 * 179.74265 * 11 10 9 13 13 C 1.34801 * 126.84957 * 0.02562 * 12 11 10 14 14 N 1.30826 * 108.02238 * 180.02562 * 13 12 11 15 15 C 1.33296 * 109.84329 * 359.97438 * 14 13 12 16 16 N 1.30723 * 109.01591 * 359.71538 * 15 14 13 17 17 C 1.39049 * 120.15519 * 359.75752 * 11 10 9 18 18 C 1.37721 * 120.07664 * 359.97438 * 17 11 10 19 19 C 1.47031 * 108.52480 * 335.75412 * 5 4 2 20 20 C 1.54325 * 107.40173 * 1.17637 * 19 5 4 21 21 H 1.09000 * 110.71649 * 140.48068 * 20 19 5 22 22 N 1.46496 * 110.72211 * 263.75787 * 20 19 5 23 23 C 1.36941 * 119.99648 * 273.54824 * 22 20 19 24 24 H 1.07998 * 120.00143 * 359.97438 * 23 22 20 25 25 C 1.38818 * 119.99753 * 180.02562 * 23 22 20 26 26 N 1.31613 * 119.99498 * 179.97438 * 25 23 22 27 27 Si 1.86794 * 119.99990 * 359.97438 * 25 23 22 28 28 H 1.48498 * 109.47487 * 89.99993 * 27 25 23 29 29 H 1.48503 * 109.47112 * 209.99970 * 27 25 23 30 30 H 1.48501 * 109.47127 * 329.99613 * 27 25 23 31 31 H 1.09001 * 109.47684 * 183.90431 * 1 2 3 32 32 H 1.09008 * 109.47259 * 303.90449 * 1 2 3 33 33 H 1.08997 * 109.47460 * 63.90109 * 1 2 3 34 34 H 1.09006 * 110.36977 * 273.92600 * 4 2 1 35 35 H 1.09003 * 110.36859 * 36.12933 * 4 2 1 36 36 H 1.08004 * 120.03310 * 359.97438 * 9 8 6 37 37 H 1.08001 * 119.95991 * 180.25451 * 10 9 8 38 38 H 1.08003 * 125.98782 * 0.03313 * 13 12 11 39 39 H 1.07995 * 125.48877 * 180.02562 * 15 14 13 40 40 H 1.07998 * 119.95383 * 179.97438 * 17 11 10 41 41 H 1.08011 * 120.03716 * 180.02562 * 18 17 11 42 42 H 1.09001 * 109.87842 * 241.68495 * 19 5 4 43 43 H 1.08997 * 109.88195 * 120.67478 * 19 5 4 44 44 H 0.96996 * 120.00272 * 93.54206 * 22 20 19 45 45 H 0.97003 * 119.99889 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8066 1.2003 5 7 3.4308 -1.2423 0.7736 6 6 4.4537 -1.5594 1.5918 7 8 4.3446 -1.3986 2.7918 8 6 5.7072 -2.1023 1.0306 9 6 5.8909 -2.1521 -0.3534 10 6 7.0634 -2.6541 -0.8732 11 6 8.0593 -3.1210 -0.0225 12 7 9.2464 -3.6350 -0.5541 13 6 9.5683 -3.7420 -1.8587 14 7 10.7617 -4.2721 -1.9390 15 6 11.2319 -4.5155 -0.7157 16 7 10.3435 -4.1368 0.1653 17 6 7.8775 -3.0782 1.3554 18 6 6.7098 -2.5725 1.8822 19 6 3.4674 -1.2741 -0.6959 20 6 2.0861 -0.8079 -1.2022 21 1 2.1922 -0.1700 -2.0796 22 7 1.2268 -1.9574 -1.4961 23 6 1.2816 -2.5564 -2.7263 24 1 1.9580 -2.1811 -3.4800 25 6 0.4669 -3.6453 -3.0050 26 7 0.5193 -4.2206 -4.1876 27 14 -0.7035 -4.2939 -1.7017 28 1 -2.0111 -3.6005 -1.8214 29 1 -0.8979 -5.7536 -1.8933 30 1 -0.1318 -4.0434 -0.3542 31 1 -0.3634 -1.0252 0.0700 32 1 -0.3634 0.5733 0.8530 33 1 -0.3634 0.4521 -0.9228 34 1 2.1559 -0.1719 2.0838 35 1 1.4507 -1.6692 1.4038 36 1 5.1159 -1.7938 -1.0149 37 1 7.2078 -2.6891 -1.9429 38 1 8.9496 -3.4425 -2.6917 39 1 12.1940 -4.9505 -0.4889 40 1 8.6529 -3.4421 2.0132 41 1 6.5695 -2.5392 2.9527 42 1 3.6650 -2.2894 -1.0399 43 1 4.2429 -0.6013 -1.0621 44 1 0.6191 -2.2943 -0.8193 45 1 -0.0497 -4.9817 -4.3823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054777184.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:26:12 Heat of formation + Delta-G solvation = 138.761967 kcal Electronic energy + Delta-G solvation = -29126.735212 eV Core-core repulsion = 25148.132789 eV Total energy + Delta-G solvation = -3978.602423 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.63724 -40.61773 -38.97651 -37.72211 -34.59667 -34.16672 -32.77432 -31.95274 -31.25657 -30.83825 -29.91526 -28.44482 -26.57322 -24.84600 -24.01988 -23.46691 -22.55075 -21.56169 -21.38573 -19.94505 -19.59088 -18.59491 -18.01921 -17.26434 -16.33553 -16.16520 -15.84516 -15.74574 -14.96226 -14.91431 -14.61011 -14.46926 -14.35802 -14.14965 -13.87182 -13.40319 -13.26919 -13.13796 -12.85095 -12.75450 -12.59391 -12.27659 -12.07624 -11.90962 -11.59200 -11.36939 -11.08786 -11.08318 -10.77437 -10.59455 -10.47390 -10.40548 -10.23014 -10.08280 -9.94795 -9.71766 -9.37274 -9.12224 -8.73044 -8.46810 -7.48435 -5.94076 -3.31774 0.15873 1.03483 1.49951 1.83630 2.55330 2.80274 3.02650 3.25927 3.28312 3.35736 3.64680 3.91681 4.04884 4.38807 4.43346 4.44088 4.58148 4.65315 4.82493 4.88395 4.99252 5.00863 5.12606 5.15163 5.26741 5.42713 5.48838 5.59784 5.66405 5.68069 5.69914 5.79873 5.83723 5.92969 6.00285 6.02313 6.04235 6.07789 6.12271 6.23187 6.28958 6.38595 6.47523 6.56864 6.66566 7.59671 7.63650 7.79422 8.17674 8.24533 9.01203 9.73902 9.91731 11.23312 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011387 B = 0.003130 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.430306 B = 8944.481419 C =10560.665790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 H 0.086 0.914 4 C 0.113 3.887 5 N -0.602 5.602 6 C 0.571 3.429 7 O -0.548 6.548 8 C -0.129 4.129 9 C -0.093 4.093 10 C -0.138 4.138 11 C 0.166 3.834 12 N -0.330 5.330 13 C 0.266 3.734 14 N -0.538 5.538 15 C 0.206 3.794 16 N -0.315 5.315 17 C -0.124 4.124 18 C -0.040 4.040 19 C 0.055 3.945 20 C 0.177 3.823 21 H 0.082 0.918 22 N -0.736 5.736 23 C -0.255 4.255 24 H 0.094 0.906 25 C 0.013 3.987 26 N -0.927 5.927 27 Si 0.878 3.122 28 H -0.282 1.282 29 H -0.290 1.290 30 H -0.277 1.277 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.181 0.819 37 H 0.140 0.860 38 H 0.226 0.774 39 H 0.223 0.777 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.093 0.907 43 H 0.071 0.929 44 H 0.364 0.636 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.481 6.359 7.530 16.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.136 4.136 3 H 0.105 0.895 4 C -0.009 4.009 5 N -0.334 5.334 6 C 0.361 3.639 7 O -0.428 6.428 8 C -0.132 4.132 9 C -0.111 4.111 10 C -0.159 4.159 11 C 0.072 3.928 12 N -0.114 5.114 13 C -0.029 4.029 14 N -0.264 5.264 15 C -0.097 4.097 16 N -0.140 5.140 17 C -0.144 4.144 18 C -0.059 4.059 19 C -0.070 4.070 20 C 0.065 3.935 21 H 0.100 0.900 22 N -0.379 5.379 23 C -0.384 4.384 24 H 0.111 0.889 25 C -0.184 4.184 26 N -0.573 5.573 27 Si 0.708 3.292 28 H -0.208 1.208 29 H -0.216 1.216 30 H -0.203 1.203 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.198 0.802 37 H 0.157 0.843 38 H 0.242 0.758 39 H 0.239 0.761 40 H 0.160 0.840 41 H 0.163 0.837 42 H 0.111 0.889 43 H 0.089 0.911 44 H 0.199 0.801 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.804 6.186 8.415 17.310 hybrid contribution -0.862 -0.781 0.654 1.334 sum 12.942 5.405 9.069 16.702 Atomic orbital electron populations 1.21567 0.93510 1.02276 1.01744 1.22661 0.96862 0.98995 0.95114 0.89547 1.22371 0.82381 0.98423 0.97740 1.48366 1.11957 1.65408 1.07629 1.17790 0.82537 0.78008 0.85561 1.90753 1.82303 1.55162 1.14572 1.20024 0.95488 1.03752 0.93983 1.22918 0.97535 0.95053 0.95557 1.20856 0.93064 1.02193 0.99814 1.17831 0.83363 0.97889 0.93681 1.47738 1.12859 1.45025 1.05736 1.26339 0.93593 0.95296 0.87670 1.70663 1.09455 1.20818 1.25419 1.26201 1.00003 0.97779 0.85692 1.78132 0.95666 1.19980 1.20236 1.20833 0.98902 1.02007 0.92645 1.21164 0.90686 0.93244 1.00835 1.23745 1.01618 1.02570 0.79083 1.21228 0.87797 0.89268 0.95198 0.89975 1.42820 1.46235 1.34334 1.14462 1.19023 1.20144 1.09854 0.89372 0.88865 1.24649 0.99345 0.98111 0.96255 1.69681 1.42317 1.24716 1.20582 0.86670 0.81971 0.78726 0.81842 1.20803 1.21602 1.20349 0.92270 0.93107 0.91491 0.90655 0.91351 0.80228 0.84266 0.75778 0.76069 0.83971 0.83746 0.88943 0.91124 0.80100 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 8.85 37.15 0.33 -1.39 16 2 C -0.12 -1.51 3.51 -88.48 -0.31 -1.82 16 3 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.11 1.61 6.40 -2.35 -0.02 1.59 16 5 N -0.60 -8.91 3.34 -176.26 -0.59 -9.50 16 6 C 0.57 8.98 7.81 -12.41 -0.10 8.88 16 7 O -0.55 -10.02 16.61 5.31 0.09 -9.93 16 8 C -0.13 -1.72 5.87 -104.95 -0.62 -2.34 16 9 C -0.09 -1.07 8.60 -39.22 -0.34 -1.41 16 10 C -0.14 -1.41 9.45 -39.47 -0.37 -1.78 16 11 C 0.17 1.87 6.70 -83.59 -0.56 1.31 16 12 N -0.33 -3.72 3.81 -11.77 -0.04 -3.76 16 13 C 0.27 2.58 11.97 -90.32 -1.08 1.50 16 14 N -0.54 -5.89 11.19 -15.73 -0.18 -6.06 16 15 C 0.21 2.04 13.03 -91.76 -1.20 0.85 16 16 N -0.31 -3.71 12.03 29.30 0.35 -3.35 16 17 C -0.12 -1.42 9.66 -39.47 -0.38 -1.81 16 18 C -0.04 -0.49 9.58 -39.22 -0.38 -0.86 16 19 C 0.05 0.77 4.60 -3.06 -0.01 0.75 16 20 C 0.18 2.72 3.37 -66.10 -0.22 2.50 16 21 H 0.08 1.23 8.12 -51.93 -0.42 0.81 16 22 N -0.74 -14.75 4.42 -51.65 -0.23 -14.98 16 23 C -0.25 -6.27 10.46 -15.05 -0.16 -6.43 16 24 H 0.09 2.43 8.06 -52.49 -0.42 2.00 16 25 C 0.01 0.36 5.50 -17.43 -0.10 0.26 16 26 N -0.93 -27.01 13.97 55.49 0.78 -26.24 16 27 Si 0.88 20.64 27.73 -169.99 -4.71 15.92 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 30 H -0.28 -6.19 6.52 56.52 0.37 -5.83 16 31 H 0.06 0.87 6.38 -51.93 -0.33 0.54 16 32 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.03 8.00 -51.93 -0.42 0.61 16 35 H 0.07 1.05 7.98 -51.93 -0.41 0.64 16 36 H 0.18 2.01 2.72 -58.73 -0.16 1.85 16 37 H 0.14 1.01 6.78 -52.49 -0.36 0.65 16 38 H 0.23 1.27 7.08 -52.48 -0.37 0.89 16 39 H 0.22 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.14 1.54 7.72 -52.49 -0.41 1.14 16 41 H 0.14 1.70 7.66 -52.48 -0.40 1.30 16 42 H 0.09 1.45 6.63 -51.93 -0.34 1.10 16 43 H 0.07 0.79 6.73 -51.93 -0.35 0.44 16 44 H 0.36 7.45 3.96 -40.82 -0.16 7.29 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 367.82 15.07 5.54 5.54 Total: -1.00 -33.01 367.82 -9.91 -42.93 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -5.42 Total: 9.64 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -5.50 Total: -0.20 kcal Atomic # 7 Polarization: -63.99 SS G_CDS: 0.09 Total: -63.90 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.71 Total: 15.92 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.01 -9.91 -42.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054777184.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.689 kcal (2) G-P(sol) polarization free energy of solvation -33.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds