Wall clock time and date at job start Sat Apr 11 2020 06:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 110.91685 * 2 1 4 4 C 1.54907 * 111.00459 * 123.89955 * 2 1 3 5 5 N 1.47741 * 104.84668 * 155.17013 * 4 2 1 6 6 C 1.34772 * 125.82584 * 155.82821 * 5 4 2 7 7 O 1.21567 * 120.00333 * 354.23105 * 6 5 4 8 8 C 1.47677 * 119.99723 * 174.23422 * 6 5 4 9 9 C 1.39702 * 120.08297 * 6.97414 * 8 6 5 10 10 C 1.37726 * 119.92136 * 179.74161 * 9 8 6 11 11 C 1.39045 * 120.08005 * 0.51785 * 10 9 8 12 12 N 1.39865 * 119.91898 * 179.74265 * 11 10 9 13 13 C 1.34801 * 126.84957 * 0.02562 * 12 11 10 14 14 N 1.30826 * 108.02238 * 180.02562 * 13 12 11 15 15 C 1.33296 * 109.84329 * 359.97438 * 14 13 12 16 16 N 1.30723 * 109.01591 * 359.71538 * 15 14 13 17 17 C 1.39049 * 120.15519 * 359.75752 * 11 10 9 18 18 C 1.37721 * 120.07664 * 359.97438 * 17 11 10 19 19 C 1.47031 * 108.52480 * 335.75412 * 5 4 2 20 20 C 1.54325 * 107.40173 * 1.17637 * 19 5 4 21 21 H 1.09000 * 110.71649 * 140.48068 * 20 19 5 22 22 N 1.46496 * 110.72211 * 263.75787 * 20 19 5 23 23 C 1.36941 * 119.99648 * 273.54824 * 22 20 19 24 24 H 1.07998 * 120.00143 * 359.97438 * 23 22 20 25 25 C 1.38818 * 119.99753 * 180.02562 * 23 22 20 26 26 N 1.31613 * 119.99498 * 179.97438 * 25 23 22 27 27 Si 1.86794 * 119.99990 * 359.97438 * 25 23 22 28 28 H 1.48498 * 109.47487 * 89.99993 * 27 25 23 29 29 H 1.48503 * 109.47112 * 209.99970 * 27 25 23 30 30 H 1.48501 * 109.47127 * 329.99613 * 27 25 23 31 31 H 1.09001 * 109.47684 * 183.90431 * 1 2 3 32 32 H 1.09008 * 109.47259 * 303.90449 * 1 2 3 33 33 H 1.08997 * 109.47460 * 63.90109 * 1 2 3 34 34 H 1.09006 * 110.36977 * 273.92600 * 4 2 1 35 35 H 1.09003 * 110.36859 * 36.12933 * 4 2 1 36 36 H 1.08004 * 120.03310 * 359.97438 * 9 8 6 37 37 H 1.08001 * 119.95991 * 180.25451 * 10 9 8 38 38 H 1.08003 * 125.98782 * 0.03313 * 13 12 11 39 39 H 1.07995 * 125.48877 * 180.02562 * 15 14 13 40 40 H 1.07998 * 119.95383 * 179.97438 * 17 11 10 41 41 H 1.08011 * 120.03716 * 180.02562 * 18 17 11 42 42 H 1.09001 * 109.87842 * 241.68495 * 19 5 4 43 43 H 1.08997 * 109.88195 * 120.67478 * 19 5 4 44 44 H 0.96996 * 120.00272 * 93.54206 * 22 20 19 45 45 H 0.97003 * 119.99889 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8066 1.2003 5 7 3.4308 -1.2423 0.7736 6 6 4.4537 -1.5594 1.5918 7 8 4.3446 -1.3986 2.7918 8 6 5.7072 -2.1023 1.0306 9 6 5.8909 -2.1521 -0.3534 10 6 7.0634 -2.6541 -0.8732 11 6 8.0593 -3.1210 -0.0225 12 7 9.2464 -3.6350 -0.5541 13 6 9.5683 -3.7420 -1.8587 14 7 10.7617 -4.2721 -1.9390 15 6 11.2319 -4.5155 -0.7157 16 7 10.3435 -4.1368 0.1653 17 6 7.8775 -3.0782 1.3554 18 6 6.7098 -2.5725 1.8822 19 6 3.4674 -1.2741 -0.6959 20 6 2.0861 -0.8079 -1.2022 21 1 2.1922 -0.1700 -2.0796 22 7 1.2268 -1.9574 -1.4961 23 6 1.2816 -2.5564 -2.7263 24 1 1.9580 -2.1811 -3.4800 25 6 0.4669 -3.6453 -3.0050 26 7 0.5193 -4.2206 -4.1876 27 14 -0.7035 -4.2939 -1.7017 28 1 -2.0111 -3.6005 -1.8214 29 1 -0.8979 -5.7536 -1.8933 30 1 -0.1318 -4.0434 -0.3542 31 1 -0.3634 -1.0252 0.0700 32 1 -0.3634 0.5733 0.8530 33 1 -0.3634 0.4521 -0.9228 34 1 2.1559 -0.1719 2.0838 35 1 1.4507 -1.6692 1.4038 36 1 5.1159 -1.7938 -1.0149 37 1 7.2078 -2.6891 -1.9429 38 1 8.9496 -3.4425 -2.6917 39 1 12.1940 -4.9505 -0.4889 40 1 8.6529 -3.4421 2.0132 41 1 6.5695 -2.5392 2.9527 42 1 3.6650 -2.2894 -1.0399 43 1 4.2429 -0.6013 -1.0621 44 1 0.6191 -2.2943 -0.8193 45 1 -0.0497 -4.9817 -4.3823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054777184.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:26:11 Heat of formation + Delta-G solvation = 120.345877 kcal Electronic energy + Delta-G solvation = -29127.533794 eV Core-core repulsion = 25148.132789 eV Total energy + Delta-G solvation = -3979.401004 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.41040 -41.71841 -39.98432 -38.94657 -35.88383 -35.35722 -34.09206 -32.87194 -32.65016 -31.90158 -30.82588 -29.79899 -27.61716 -25.98538 -25.29259 -24.49266 -23.74496 -22.48302 -22.23538 -21.02124 -20.85064 -19.77009 -19.41535 -18.40626 -17.51770 -16.99326 -16.91305 -16.64183 -16.40794 -16.03472 -15.81182 -15.70771 -15.36452 -15.24722 -14.79269 -14.65842 -14.45514 -14.24624 -14.08951 -13.96160 -13.56120 -13.46779 -13.27537 -13.04894 -13.00208 -12.87687 -12.39118 -12.22045 -11.99469 -11.93775 -11.75305 -11.58162 -11.36448 -11.26255 -11.17574 -11.02944 -10.88326 -10.25439 -9.79749 -9.50888 -9.26886 -7.97759 -5.29396 -0.73137 0.15703 0.65939 1.06026 1.38924 1.39526 1.46260 1.70003 1.84193 1.91067 2.50295 2.66946 3.23239 3.30827 3.32704 3.33278 3.57878 3.63494 3.71082 3.80340 3.85661 3.92216 4.02730 4.11568 4.29571 4.36349 4.43215 4.51837 4.59961 4.64730 4.80690 4.81506 4.87107 4.88968 4.93985 4.99167 5.07812 5.18687 5.22162 5.26065 5.30028 5.31768 5.46795 5.50056 5.86031 5.86322 6.26652 6.42628 6.87948 6.99146 7.12816 7.89118 8.05181 9.22937 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011387 B = 0.003130 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.430306 B = 8944.481419 C =10560.665790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.100 4.100 3 H 0.116 0.884 4 C 0.109 3.891 5 N -0.603 5.603 6 C 0.567 3.433 7 O -0.582 6.582 8 C -0.148 4.148 9 C -0.090 4.090 10 C -0.131 4.131 11 C 0.166 3.834 12 N -0.342 5.342 13 C 0.271 3.729 14 N -0.560 5.560 15 C 0.209 3.791 16 N -0.347 5.347 17 C -0.127 4.127 18 C -0.043 4.043 19 C 0.062 3.938 20 C 0.165 3.835 21 H 0.094 0.906 22 N -0.740 5.740 23 C -0.216 4.216 24 H 0.077 0.923 25 C -0.054 4.054 26 N -0.978 5.978 27 Si 0.932 3.068 28 H -0.279 1.279 29 H -0.305 1.305 30 H -0.262 1.262 31 H 0.037 0.963 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.186 0.814 37 H 0.173 0.827 38 H 0.262 0.738 39 H 0.254 0.746 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.363 0.637 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.485 7.760 7.586 18.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.120 4.120 3 H 0.134 0.866 4 C -0.013 4.013 5 N -0.333 5.333 6 C 0.359 3.641 7 O -0.465 6.465 8 C -0.152 4.152 9 C -0.108 4.108 10 C -0.151 4.151 11 C 0.072 3.928 12 N -0.126 5.126 13 C -0.024 4.024 14 N -0.286 5.286 15 C -0.093 4.093 16 N -0.172 5.172 17 C -0.147 4.147 18 C -0.063 4.063 19 C -0.062 4.062 20 C 0.056 3.944 21 H 0.111 0.889 22 N -0.383 5.383 23 C -0.347 4.347 24 H 0.095 0.905 25 C -0.246 4.246 26 N -0.629 5.629 27 Si 0.761 3.239 28 H -0.205 1.205 29 H -0.233 1.233 30 H -0.187 1.187 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.202 0.798 37 H 0.191 0.809 38 H 0.278 0.722 39 H 0.270 0.730 40 H 0.162 0.838 41 H 0.159 0.841 42 H 0.095 0.905 43 H 0.125 0.875 44 H 0.198 0.802 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.830 7.641 8.510 18.728 hybrid contribution -1.019 -1.145 0.623 1.654 sum 13.811 6.496 9.133 17.787 Atomic orbital electron populations 1.21568 0.93371 1.01349 1.02797 1.22633 0.96884 0.99733 0.92751 0.86600 1.22430 0.82030 0.98170 0.98686 1.48436 1.11966 1.65035 1.07906 1.18157 0.83253 0.77517 0.85223 1.90726 1.83064 1.56723 1.15961 1.19960 0.94913 1.05299 0.94985 1.22929 0.98154 0.95035 0.94656 1.21153 0.91869 1.00700 1.01379 1.17977 0.83717 0.97375 0.93704 1.47789 1.12810 1.45664 1.06307 1.27139 0.93527 0.93787 0.87911 1.70715 1.10263 1.21737 1.25901 1.26900 1.00679 0.96534 0.85175 1.78108 0.96384 1.21302 1.21401 1.20854 0.98623 1.02057 0.93213 1.21145 0.90876 0.93491 1.00744 1.23641 1.01459 1.02508 0.78587 1.21534 0.87904 0.88134 0.96864 0.88858 1.42861 1.47204 1.35426 1.12816 1.19070 1.17254 1.08110 0.90239 0.90491 1.25248 1.01969 0.99567 0.97845 1.69825 1.44319 1.25947 1.22790 0.85770 0.80479 0.77068 0.80553 1.20510 1.23280 1.18685 0.94367 0.90679 0.91634 0.90024 0.92897 0.79754 0.80917 0.72244 0.73014 0.83810 0.84069 0.90539 0.87539 0.80230 0.93662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.85 71.98 0.64 -2.46 16 2 C -0.10 -2.30 3.51 -9.40 -0.03 -2.33 16 3 H 0.12 2.07 8.14 -2.38 -0.02 2.05 16 4 C 0.11 2.89 6.40 86.79 0.56 3.45 16 5 N -0.60 -16.80 3.34 -829.83 -2.77 -19.57 16 6 C 0.57 17.37 7.81 86.74 0.68 18.05 16 7 O -0.58 -21.26 16.61 -3.93 -0.07 -21.32 16 8 C -0.15 -3.81 5.87 -20.08 -0.12 -3.93 16 9 C -0.09 -1.89 8.60 22.50 0.19 -1.69 16 10 C -0.13 -2.29 9.45 22.34 0.21 -2.08 16 11 C 0.17 3.44 6.70 38.25 0.26 3.69 16 12 N -0.34 -7.04 3.81 -191.16 -0.73 -7.77 16 13 C 0.27 4.52 11.97 180.24 2.16 6.68 16 14 N -0.56 -11.06 11.19 -203.68 -2.28 -13.34 16 15 C 0.21 3.78 13.03 180.75 2.35 6.14 16 16 N -0.35 -7.70 12.03 -61.21 -0.74 -8.44 16 17 C -0.13 -2.84 9.66 22.34 0.22 -2.62 16 18 C -0.04 -1.04 9.58 22.50 0.22 -0.83 16 19 C 0.06 1.58 4.60 86.73 0.40 1.98 16 20 C 0.17 4.66 3.37 46.18 0.16 4.82 16 21 H 0.09 2.49 8.12 -2.39 -0.02 2.47 16 22 N -0.74 -28.51 4.42 -317.33 -1.40 -29.91 16 23 C -0.22 -10.48 10.46 84.03 0.88 -9.60 16 24 H 0.08 3.97 8.06 -2.91 -0.02 3.94 16 25 C -0.05 -2.92 5.50 84.86 0.47 -2.46 16 26 N -0.98 -58.20 13.97 21.65 0.30 -57.90 16 27 Si 0.93 42.91 27.73 68.60 1.90 44.81 16 28 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 29 H -0.31 -14.74 7.11 99.48 0.71 -14.04 16 30 H -0.26 -11.15 6.52 99.48 0.65 -10.50 16 31 H 0.04 1.05 6.38 -2.39 -0.02 1.03 16 32 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 2.08 8.00 -2.38 -0.02 2.06 16 35 H 0.05 1.57 7.98 -2.39 -0.02 1.55 16 36 H 0.19 3.62 2.72 -8.78 -0.02 3.59 16 37 H 0.17 1.78 6.78 -2.91 -0.02 1.76 16 38 H 0.26 1.92 7.08 -2.91 -0.02 1.90 16 39 H 0.25 2.40 8.06 -2.91 -0.02 2.38 16 40 H 0.14 3.09 7.72 -2.91 -0.02 3.07 16 41 H 0.14 3.42 7.66 -2.91 -0.02 3.39 16 42 H 0.08 2.24 6.63 -2.39 -0.02 2.23 16 43 H 0.11 1.99 6.73 -2.39 -0.02 1.98 16 44 H 0.36 14.31 3.96 -92.71 -0.37 13.94 16 45 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -72.88 367.82 4.06 -68.82 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 0.61 Total: 27.82 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 9.22 Total: 16.80 kcal Atomic # 7 Polarization: -129.32 SS G_CDS: -7.61 Total: -136.93 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.07 Total: -21.32 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.90 Total: 44.81 kcal Total: -72.88 4.06 -68.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054777184.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.168 kcal (2) G-P(sol) polarization free energy of solvation -72.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds