Wall clock time and date at job start Sat Apr 11 2020 06:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 110.78106 * 2 1 4 4 C 1.54368 * 110.75347 * 123.24595 * 2 1 3 5 5 N 1.47022 * 107.28706 * 140.50342 * 4 2 1 6 6 C 1.34782 * 125.64901 * 181.12634 * 5 4 2 7 7 O 1.21578 * 119.99839 * 174.30762 * 6 5 4 8 8 C 1.47678 * 119.99856 * 354.30949 * 6 5 4 9 9 C 1.39697 * 120.07910 * 7.04965 * 8 6 5 10 10 C 1.37729 * 119.92250 * 179.76453 * 9 8 6 11 11 C 1.39043 * 120.07870 * 0.51028 * 10 9 8 12 12 N 1.39867 * 119.92485 * 179.76620 * 11 10 9 13 13 C 1.34806 * 126.84590 * 359.97299 * 12 11 10 14 14 N 1.30810 * 108.02061 * 179.97438 * 13 12 11 15 15 C 1.33289 * 109.84933 * 0.02562 * 14 13 12 16 16 N 1.30733 * 109.01407 * 359.73640 * 15 14 13 17 17 C 1.39045 * 120.15390 * 359.73912 * 11 10 9 18 18 C 1.37735 * 120.08072 * 0.02562 * 17 11 10 19 19 C 1.47422 * 108.70494 * 1.09497 * 5 4 2 20 20 C 1.54911 * 104.83069 * 335.86746 * 19 5 4 21 21 H 1.08998 * 111.00465 * 278.90059 * 20 19 5 22 22 N 1.46503 * 111.00153 * 155.08329 * 20 19 5 23 23 C 1.36937 * 119.99531 * 89.58543 * 22 20 19 24 24 H 1.07997 * 120.00300 * 0.02562 * 23 22 20 25 25 C 1.38813 * 119.99592 * 179.97438 * 23 22 20 26 26 N 1.31616 * 119.99967 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00049 * 179.97438 * 25 23 22 28 28 H 1.48494 * 109.47068 * 180.02562 * 27 25 23 29 29 H 1.48503 * 109.47005 * 60.00258 * 27 25 23 30 30 H 1.48492 * 109.47307 * 300.00417 * 27 25 23 31 31 H 1.08994 * 109.47626 * 183.23609 * 1 2 3 32 32 H 1.09006 * 109.47093 * 303.24238 * 1 2 3 33 33 H 1.09005 * 109.47220 * 63.23476 * 1 2 3 34 34 H 1.09001 * 109.85074 * 21.10197 * 4 2 1 35 35 H 1.08997 * 110.03537 * 260.01191 * 4 2 1 36 36 H 1.08004 * 120.03778 * 359.97438 * 9 8 6 37 37 H 1.08006 * 119.96382 * 180.27440 * 10 9 8 38 38 H 1.08003 * 125.98358 * 0.02562 * 13 12 11 39 39 H 1.08002 * 125.49655 * 180.02562 * 15 14 13 40 40 H 1.08009 * 119.96420 * 179.97438 * 17 11 10 41 41 H 1.08003 * 120.03980 * 179.97438 * 18 17 11 42 42 H 1.09000 * 110.36645 * 217.03112 * 19 5 4 43 43 H 1.08996 * 110.46251 * 94.75347 * 19 5 4 44 44 H 0.96993 * 119.99974 * 269.57682 * 22 20 19 45 45 H 0.96996 * 120.00573 * 0.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0770 -0.7914 1.2073 5 7 3.2447 -1.5516 0.7384 6 6 3.9916 -2.3861 1.4884 7 8 4.8738 -3.0435 0.9710 8 6 3.7382 -2.5020 2.9387 9 6 2.6350 -1.8631 3.5099 10 6 2.3990 -1.9773 4.8620 11 6 3.2633 -2.7186 5.6601 12 7 3.0233 -2.8284 7.0336 13 6 2.0047 -2.2766 7.7230 14 7 2.1363 -2.6150 8.9797 15 6 3.2193 -3.3768 9.1323 16 7 3.7926 -3.5399 7.9687 17 6 4.3652 -3.3515 5.0958 18 6 4.6046 -3.2456 3.7435 19 6 3.4631 -1.2507 -0.6882 20 6 2.0789 -0.7955 -1.2138 21 1 1.4447 -1.6532 -1.4379 22 7 2.2215 0.0696 -2.3875 23 6 2.2521 -0.4782 -3.6421 24 1 2.1708 -1.5479 -3.7664 25 6 2.3867 0.3415 -4.7543 26 7 2.4853 1.6452 -4.6028 27 14 2.4292 -0.4058 -6.4657 28 1 2.5795 0.6742 -7.4738 29 1 1.1650 -1.1440 -6.7151 30 1 3.5775 -1.3417 -6.5688 31 1 -0.3634 -1.0259 0.0580 32 1 -0.3633 0.5634 0.8595 33 1 -0.3634 0.4628 -0.9176 34 1 1.3137 -1.4757 1.5778 35 1 2.3754 -0.1049 1.9995 36 1 1.9660 -1.2831 2.8914 37 1 1.5438 -1.4873 5.3037 38 1 1.2175 -1.6633 7.3098 39 1 3.5647 -3.7959 10.0657 40 1 5.0348 -3.9263 5.7186 41 1 5.4610 -3.7372 3.3060 42 1 3.7951 -2.1437 -1.2177 43 1 4.1939 -0.4499 -0.8011 44 1 2.2940 1.0304 -2.2759 45 1 2.4644 2.0332 -3.7141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054777186.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:26:17 Heat of formation + Delta-G solvation = 132.401032 kcal Electronic energy + Delta-G solvation = -28507.301513 eV Core-core repulsion = 24528.423259 eV Total energy + Delta-G solvation = -3978.878254 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.81889 -40.73051 -39.04207 -37.70017 -34.86162 -34.41589 -32.69089 -32.16625 -31.52966 -30.74051 -30.09442 -27.56282 -26.74527 -25.02500 -23.86004 -23.76755 -22.51403 -21.69172 -21.38970 -20.31184 -19.93676 -18.77056 -17.61085 -17.45700 -16.44676 -16.34439 -16.07272 -15.83471 -14.98571 -14.90382 -14.80153 -14.66009 -14.35433 -14.03843 -13.75250 -13.55916 -13.49064 -13.28497 -13.12049 -12.89391 -12.77952 -12.60629 -11.95791 -11.88678 -11.56583 -11.25914 -11.12332 -10.90807 -10.72851 -10.65013 -10.59126 -10.40912 -10.26144 -10.03639 -9.93151 -9.57876 -9.27920 -9.07999 -8.89167 -8.53009 -7.21479 -6.21710 -3.24572 -0.01967 0.82070 1.32830 1.65337 2.38286 2.68242 2.94465 3.47745 3.48638 3.50682 3.67903 3.71995 3.86055 4.21658 4.26560 4.35332 4.46225 4.54512 4.61032 4.78648 4.85942 4.92803 5.00846 5.08210 5.24563 5.31818 5.45206 5.51347 5.53535 5.58253 5.61923 5.69903 5.73599 5.82378 5.84465 5.91731 5.97570 6.05947 6.11538 6.20152 6.29581 6.38890 6.43456 6.48726 6.71032 7.46038 7.53939 7.70271 8.12861 8.63635 9.06249 9.92947 10.05223 11.25843 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027728 B = 0.002074 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.555031 B =13498.505165 C =14281.224304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 H 0.085 0.915 4 C 0.095 3.905 5 N -0.606 5.606 6 C 0.566 3.434 7 O -0.537 6.537 8 C -0.125 4.125 9 C -0.099 4.099 10 C -0.140 4.140 11 C 0.164 3.836 12 N -0.330 5.330 13 C 0.264 3.736 14 N -0.537 5.537 15 C 0.207 3.793 16 N -0.313 5.313 17 C -0.120 4.120 18 C -0.038 4.038 19 C 0.081 3.919 20 C 0.183 3.817 21 H 0.069 0.931 22 N -0.720 5.720 23 C -0.340 4.340 24 H 0.067 0.933 25 C -0.039 4.039 26 N -0.939 5.939 27 Si 1.079 2.921 28 H -0.284 1.284 29 H -0.294 1.294 30 H -0.294 1.294 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.176 0.824 37 H 0.138 0.862 38 H 0.225 0.775 39 H 0.224 0.776 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.370 0.630 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.199 -6.188 24.926 25.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.137 4.137 3 H 0.104 0.896 4 C -0.028 4.028 5 N -0.338 5.338 6 C 0.355 3.645 7 O -0.415 6.415 8 C -0.129 4.129 9 C -0.118 4.118 10 C -0.161 4.161 11 C 0.071 3.929 12 N -0.114 5.114 13 C -0.032 4.032 14 N -0.263 5.263 15 C -0.096 4.096 16 N -0.138 5.138 17 C -0.140 4.140 18 C -0.058 4.058 19 C -0.044 4.044 20 C 0.070 3.930 21 H 0.087 0.913 22 N -0.361 5.361 23 C -0.470 4.470 24 H 0.085 0.915 25 C -0.237 4.237 26 N -0.583 5.583 27 Si 0.909 3.091 28 H -0.210 1.210 29 H -0.221 1.221 30 H -0.221 1.221 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.192 0.808 37 H 0.156 0.844 38 H 0.241 0.759 39 H 0.240 0.760 40 H 0.162 0.838 41 H 0.165 0.835 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.204 0.796 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.145 -6.783 23.138 24.207 hybrid contribution -0.106 -0.004 1.771 1.774 sum -2.251 -6.786 24.910 25.915 Atomic orbital electron populations 1.21688 0.93610 1.01750 1.02305 1.22589 0.96655 0.99898 0.94605 0.89620 1.22621 0.87873 0.94645 0.97652 1.48374 1.29406 1.43397 1.12661 1.17823 0.81634 0.79423 0.85598 1.90797 1.32840 1.44440 1.73441 1.20124 0.97529 1.01319 0.93918 1.22742 0.97146 0.97218 0.94647 1.20791 1.00087 1.01393 0.93839 1.17809 0.97155 0.99425 0.78510 1.47745 1.20136 1.36926 1.06627 1.26285 0.92716 0.96499 0.87655 1.70648 1.20614 1.18426 1.16585 1.26229 0.90438 0.95618 0.97266 1.78166 1.18587 1.18011 0.99009 1.20887 0.96964 1.00931 0.95234 1.21232 0.98260 0.94524 0.91781 1.23473 1.01842 1.01233 0.77862 1.21317 0.91969 0.93532 0.86179 0.91310 1.42276 1.87926 1.04618 1.01259 1.20041 1.48783 0.93630 0.84568 0.91496 1.25802 0.99730 0.95366 1.02803 1.70904 1.52674 1.10294 1.24437 0.83254 0.76005 0.74598 0.75201 1.20982 1.22133 1.22101 0.92672 0.92982 0.91245 0.90422 0.90716 0.80800 0.84436 0.75909 0.75976 0.83825 0.83502 0.90624 0.91346 0.79596 0.93357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.16 37.16 0.34 -1.23 16 2 C -0.12 -1.55 3.19 -88.76 -0.28 -1.83 16 3 H 0.09 1.16 8.00 -51.93 -0.42 0.74 16 4 C 0.09 1.03 4.47 -3.04 -0.01 1.01 16 5 N -0.61 -8.85 3.33 -176.43 -0.59 -9.43 16 6 C 0.57 8.66 7.80 -12.40 -0.10 8.56 16 7 O -0.54 -10.21 16.59 5.30 0.09 -10.12 16 8 C -0.13 -1.45 5.87 -104.95 -0.62 -2.07 16 9 C -0.10 -0.85 8.60 -39.22 -0.34 -1.19 16 10 C -0.14 -0.99 9.45 -39.47 -0.37 -1.37 16 11 C 0.16 1.47 6.70 -83.59 -0.56 0.91 16 12 N -0.33 -3.00 3.81 -11.78 -0.04 -3.04 16 13 C 0.26 1.91 11.97 -90.33 -1.08 0.83 16 14 N -0.54 -4.76 11.19 -15.73 -0.18 -4.94 16 15 C 0.21 1.69 13.03 -91.75 -1.20 0.49 16 16 N -0.31 -3.12 12.03 29.30 0.35 -2.77 16 17 C -0.12 -1.17 9.66 -39.47 -0.38 -1.55 16 18 C -0.04 -0.42 9.58 -39.22 -0.38 -0.79 16 19 C 0.08 1.45 6.63 -2.53 -0.02 1.43 16 20 C 0.18 3.27 3.14 -65.78 -0.21 3.06 16 21 H 0.07 1.29 8.02 -51.93 -0.42 0.88 16 22 N -0.72 -16.43 5.26 -51.35 -0.27 -16.70 16 23 C -0.34 -9.00 9.97 -15.06 -0.15 -9.15 16 24 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 25 C -0.04 -1.08 5.50 -17.43 -0.10 -1.18 16 26 N -0.94 -27.74 13.70 55.49 0.76 -26.98 16 27 Si 1.08 25.11 29.92 -169.99 -5.09 20.03 16 28 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 30 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 31 H 0.05 0.59 8.06 -51.93 -0.42 0.18 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 0.68 6.36 -51.93 -0.33 0.35 16 35 H 0.07 0.64 6.73 -51.93 -0.35 0.30 16 36 H 0.18 1.23 2.73 -58.65 -0.16 1.07 16 37 H 0.14 0.49 6.79 -52.48 -0.36 0.13 16 38 H 0.22 0.60 7.08 -52.48 -0.37 0.23 16 39 H 0.22 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.14 1.33 7.72 -52.48 -0.41 0.93 16 41 H 0.15 1.59 7.66 -52.48 -0.40 1.19 16 42 H 0.08 1.51 7.98 -51.93 -0.41 1.09 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.37 8.67 6.57 -40.82 -0.27 8.40 16 45 H 0.26 7.35 6.77 -40.82 -0.28 7.07 16 LS Contribution 372.65 15.07 5.62 5.62 Total: -1.00 -34.89 372.65 -10.27 -45.16 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -5.48 Total: 7.23 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -5.44 Total: -4.05 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: 0.03 Total: -63.86 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.09 Total: 20.03 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.89 -10.27 -45.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054777186.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.559 kcal (2) G-P(sol) polarization free energy of solvation -34.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds