Wall clock time and date at job start Sat Apr 11 2020 06:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 110.78106 * 2 1 4 4 C 1.54368 * 110.75347 * 123.24595 * 2 1 3 5 5 N 1.47022 * 107.28706 * 140.50342 * 4 2 1 6 6 C 1.34782 * 125.64901 * 181.12634 * 5 4 2 7 7 O 1.21578 * 119.99839 * 174.30762 * 6 5 4 8 8 C 1.47678 * 119.99856 * 354.30949 * 6 5 4 9 9 C 1.39697 * 120.07910 * 7.04965 * 8 6 5 10 10 C 1.37729 * 119.92250 * 179.76453 * 9 8 6 11 11 C 1.39043 * 120.07870 * 0.51028 * 10 9 8 12 12 N 1.39867 * 119.92485 * 179.76620 * 11 10 9 13 13 C 1.34806 * 126.84590 * 359.97299 * 12 11 10 14 14 N 1.30810 * 108.02061 * 179.97438 * 13 12 11 15 15 C 1.33289 * 109.84933 * 0.02562 * 14 13 12 16 16 N 1.30733 * 109.01407 * 359.73640 * 15 14 13 17 17 C 1.39045 * 120.15390 * 359.73912 * 11 10 9 18 18 C 1.37735 * 120.08072 * 0.02562 * 17 11 10 19 19 C 1.47422 * 108.70494 * 1.09497 * 5 4 2 20 20 C 1.54911 * 104.83069 * 335.86746 * 19 5 4 21 21 H 1.08998 * 111.00465 * 278.90059 * 20 19 5 22 22 N 1.46503 * 111.00153 * 155.08329 * 20 19 5 23 23 C 1.36937 * 119.99531 * 89.58543 * 22 20 19 24 24 H 1.07997 * 120.00300 * 0.02562 * 23 22 20 25 25 C 1.38813 * 119.99592 * 179.97438 * 23 22 20 26 26 N 1.31616 * 119.99967 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00049 * 179.97438 * 25 23 22 28 28 H 1.48494 * 109.47068 * 180.02562 * 27 25 23 29 29 H 1.48503 * 109.47005 * 60.00258 * 27 25 23 30 30 H 1.48492 * 109.47307 * 300.00417 * 27 25 23 31 31 H 1.08994 * 109.47626 * 183.23609 * 1 2 3 32 32 H 1.09006 * 109.47093 * 303.24238 * 1 2 3 33 33 H 1.09005 * 109.47220 * 63.23476 * 1 2 3 34 34 H 1.09001 * 109.85074 * 21.10197 * 4 2 1 35 35 H 1.08997 * 110.03537 * 260.01191 * 4 2 1 36 36 H 1.08004 * 120.03778 * 359.97438 * 9 8 6 37 37 H 1.08006 * 119.96382 * 180.27440 * 10 9 8 38 38 H 1.08003 * 125.98358 * 0.02562 * 13 12 11 39 39 H 1.08002 * 125.49655 * 180.02562 * 15 14 13 40 40 H 1.08009 * 119.96420 * 179.97438 * 17 11 10 41 41 H 1.08003 * 120.03980 * 179.97438 * 18 17 11 42 42 H 1.09000 * 110.36645 * 217.03112 * 19 5 4 43 43 H 1.08996 * 110.46251 * 94.75347 * 19 5 4 44 44 H 0.96993 * 119.99974 * 269.57682 * 22 20 19 45 45 H 0.96996 * 120.00573 * 0.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0770 -0.7914 1.2073 5 7 3.2447 -1.5516 0.7384 6 6 3.9916 -2.3861 1.4884 7 8 4.8738 -3.0435 0.9710 8 6 3.7382 -2.5020 2.9387 9 6 2.6350 -1.8631 3.5099 10 6 2.3990 -1.9773 4.8620 11 6 3.2633 -2.7186 5.6601 12 7 3.0233 -2.8284 7.0336 13 6 2.0047 -2.2766 7.7230 14 7 2.1363 -2.6150 8.9797 15 6 3.2193 -3.3768 9.1323 16 7 3.7926 -3.5399 7.9687 17 6 4.3652 -3.3515 5.0958 18 6 4.6046 -3.2456 3.7435 19 6 3.4631 -1.2507 -0.6882 20 6 2.0789 -0.7955 -1.2138 21 1 1.4447 -1.6532 -1.4379 22 7 2.2215 0.0696 -2.3875 23 6 2.2521 -0.4782 -3.6421 24 1 2.1708 -1.5479 -3.7664 25 6 2.3867 0.3415 -4.7543 26 7 2.4853 1.6452 -4.6028 27 14 2.4292 -0.4058 -6.4657 28 1 2.5795 0.6742 -7.4738 29 1 1.1650 -1.1440 -6.7151 30 1 3.5775 -1.3417 -6.5688 31 1 -0.3634 -1.0259 0.0580 32 1 -0.3633 0.5634 0.8595 33 1 -0.3634 0.4628 -0.9176 34 1 1.3137 -1.4757 1.5778 35 1 2.3754 -0.1049 1.9995 36 1 1.9660 -1.2831 2.8914 37 1 1.5438 -1.4873 5.3037 38 1 1.2175 -1.6633 7.3098 39 1 3.5647 -3.7959 10.0657 40 1 5.0348 -3.9263 5.7186 41 1 5.4610 -3.7372 3.3060 42 1 3.7951 -2.1437 -1.2177 43 1 4.1939 -0.4499 -0.8011 44 1 2.2940 1.0304 -2.2759 45 1 2.4644 2.0332 -3.7141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054777186.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:26:16 Heat of formation + Delta-G solvation = 111.316262 kcal Electronic energy + Delta-G solvation = -28508.215817 eV Core-core repulsion = 24528.423259 eV Total energy + Delta-G solvation = -3979.792558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.39738 -41.76860 -39.96015 -38.94491 -36.41712 -35.33238 -34.00937 -32.85224 -32.51986 -31.96356 -31.00777 -28.97805 -27.70195 -26.13542 -25.34519 -24.52217 -23.59629 -22.38188 -22.34208 -21.44146 -21.04740 -19.56266 -19.31615 -18.56978 -17.63373 -17.06094 -16.93805 -16.68240 -16.42759 -15.99437 -15.78860 -15.60841 -15.35283 -15.24021 -14.81689 -14.78881 -14.58747 -14.25397 -14.18245 -13.96657 -13.82036 -13.41668 -13.21193 -12.93690 -12.76018 -12.61167 -12.37467 -12.17925 -11.96492 -11.91796 -11.73195 -11.60000 -11.27050 -11.17404 -11.11723 -11.02241 -10.92749 -10.26143 -9.86299 -9.52929 -9.16779 -8.40054 -5.36099 -0.73414 0.15156 0.66952 1.08201 1.58501 1.66938 1.68415 1.77979 1.83689 1.86601 2.64934 2.69380 3.21972 3.29187 3.33910 3.39875 3.40644 3.64854 3.74083 3.81760 3.89400 3.97014 4.04626 4.09492 4.22410 4.27607 4.32698 4.43764 4.47510 4.55062 4.79279 4.81164 4.84854 4.87999 4.90384 4.98675 5.06092 5.11898 5.20599 5.23669 5.30009 5.30573 5.46659 5.48194 5.60133 5.89192 6.39692 6.49877 6.89875 6.94740 7.06150 7.95598 8.04890 9.11448 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027728 B = 0.002074 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.555031 B =13498.505165 C =14281.224304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.106 4.106 3 H 0.083 0.917 4 C 0.093 3.907 5 N -0.605 5.605 6 C 0.561 3.439 7 O -0.590 6.590 8 C -0.144 4.144 9 C -0.085 4.085 10 C -0.122 4.122 11 C 0.166 3.834 12 N -0.343 5.343 13 C 0.274 3.726 14 N -0.562 5.562 15 C 0.209 3.791 16 N -0.351 5.351 17 C -0.128 4.128 18 C -0.047 4.047 19 C 0.091 3.909 20 C 0.175 3.825 21 H 0.060 0.940 22 N -0.730 5.730 23 C -0.334 4.334 24 H 0.063 0.937 25 C -0.097 4.097 26 N -0.971 5.971 27 Si 1.122 2.878 28 H -0.292 1.292 29 H -0.275 1.275 30 H -0.284 1.284 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.038 0.962 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.197 0.803 37 H 0.188 0.812 38 H 0.270 0.730 39 H 0.250 0.750 40 H 0.139 0.861 41 H 0.132 0.868 42 H 0.042 0.958 43 H 0.049 0.951 44 H 0.365 0.635 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.963 -5.750 27.976 29.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.125 4.125 3 H 0.102 0.898 4 C -0.028 4.028 5 N -0.336 5.336 6 C 0.353 3.647 7 O -0.472 6.472 8 C -0.148 4.148 9 C -0.102 4.102 10 C -0.142 4.142 11 C 0.073 3.927 12 N -0.127 5.127 13 C -0.020 4.020 14 N -0.288 5.288 15 C -0.093 4.093 16 N -0.176 5.176 17 C -0.148 4.148 18 C -0.067 4.067 19 C -0.035 4.035 20 C 0.064 3.936 21 H 0.078 0.922 22 N -0.371 5.371 23 C -0.466 4.466 24 H 0.081 0.919 25 C -0.289 4.289 26 N -0.618 5.618 27 Si 0.948 3.052 28 H -0.218 1.218 29 H -0.201 1.201 30 H -0.211 1.211 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.057 0.943 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.213 0.787 37 H 0.205 0.795 38 H 0.286 0.714 39 H 0.266 0.734 40 H 0.157 0.843 41 H 0.149 0.851 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.198 0.802 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.941 -6.367 26.261 27.470 hybrid contribution 0.752 -0.197 1.012 1.276 sum -4.189 -6.564 27.273 28.363 Atomic orbital electron populations 1.21668 0.91768 1.02844 1.02541 1.22515 0.98061 0.99258 0.92706 0.89842 1.22994 0.87113 0.95415 0.97245 1.48357 1.30561 1.43713 1.10998 1.18476 0.80679 0.78404 0.87138 1.90761 1.35144 1.46585 1.74728 1.19851 0.99796 1.03870 0.91297 1.22883 0.95727 0.96160 0.95477 1.21227 1.00463 0.99787 0.92711 1.18023 0.96869 0.98908 0.78923 1.47798 1.20813 1.37611 1.06495 1.27247 0.92427 0.95285 0.87063 1.70698 1.21112 1.19271 1.17702 1.26852 0.89922 0.94745 0.97795 1.78145 1.20051 1.19524 0.99868 1.20816 0.97858 1.01589 0.94527 1.21106 0.98198 0.95034 0.92358 1.23000 1.01178 0.99000 0.80350 1.21486 0.91870 0.93563 0.86652 0.92175 1.42365 1.88155 1.04881 1.01704 1.20315 1.46536 0.93484 0.86224 0.91902 1.27043 1.00254 0.95296 1.06310 1.70993 1.55513 1.11322 1.24012 0.82686 0.77041 0.74014 0.71503 1.21829 1.20143 1.21086 0.91615 0.88991 0.94298 0.86844 0.86922 0.78721 0.79515 0.71418 0.73384 0.84311 0.85058 0.93909 0.93306 0.80174 0.94249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.16 71.98 0.66 -1.91 16 2 C -0.11 -2.54 3.19 -9.59 -0.03 -2.57 16 3 H 0.08 2.08 8.00 -2.39 -0.02 2.06 16 4 C 0.09 1.65 4.47 86.74 0.39 2.04 16 5 N -0.60 -17.20 3.33 -830.38 -2.76 -19.96 16 6 C 0.56 17.28 7.80 86.74 0.68 17.96 16 7 O -0.59 -23.82 16.59 -3.96 -0.07 -23.88 16 8 C -0.14 -3.14 5.87 -20.08 -0.12 -3.26 16 9 C -0.08 -1.06 8.60 22.50 0.19 -0.86 16 10 C -0.12 -1.05 9.45 22.34 0.21 -0.84 16 11 C 0.17 2.44 6.70 38.25 0.26 2.69 16 12 N -0.34 -5.13 3.81 -191.17 -0.73 -5.85 16 13 C 0.27 2.74 11.97 180.25 2.16 4.90 16 14 N -0.56 -8.18 11.19 -203.68 -2.28 -10.46 16 15 C 0.21 2.96 13.03 180.74 2.35 5.31 16 16 N -0.35 -6.41 12.03 -61.20 -0.74 -7.15 16 17 C -0.13 -2.37 9.66 22.34 0.22 -2.16 16 18 C -0.05 -1.03 9.58 22.50 0.22 -0.81 16 19 C 0.09 3.38 6.63 86.86 0.58 3.96 16 20 C 0.18 6.32 3.14 46.38 0.15 6.46 16 21 H 0.06 2.27 8.02 -2.39 -0.02 2.26 16 22 N -0.73 -34.24 5.26 -316.37 -1.66 -35.90 16 23 C -0.33 -18.14 9.97 84.03 0.84 -17.30 16 24 H 0.06 3.40 7.83 -2.91 -0.02 3.37 16 25 C -0.10 -5.48 5.50 84.86 0.47 -5.02 16 26 N -0.97 -58.82 13.70 21.65 0.30 -58.52 16 27 Si 1.12 51.36 29.92 68.60 2.05 53.42 16 28 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 29 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 30 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 31 H 0.06 1.16 8.06 -2.39 -0.02 1.14 16 32 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.11 1.30 6.36 -2.39 -0.02 1.29 16 35 H 0.11 1.28 6.73 -2.39 -0.02 1.27 16 36 H 0.20 1.51 2.73 -8.70 -0.02 1.48 16 37 H 0.19 -0.23 6.79 -2.91 -0.02 -0.25 16 38 H 0.27 -0.36 7.08 -2.91 -0.02 -0.38 16 39 H 0.25 1.59 8.06 -2.91 -0.02 1.57 16 40 H 0.14 2.63 7.72 -2.91 -0.02 2.61 16 41 H 0.13 3.14 7.66 -2.91 -0.02 3.12 16 42 H 0.04 1.83 7.98 -2.39 -0.02 1.81 16 43 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.37 17.67 6.57 -92.71 -0.61 17.06 16 45 H 0.25 14.71 6.77 -92.71 -0.63 14.08 16 Total: -1.00 -82.65 372.65 3.88 -78.77 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.56 Total: 20.94 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 9.21 Total: 8.60 kcal Atomic # 7 Polarization: -129.97 SS G_CDS: -7.87 Total: -137.84 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.07 Total: -23.88 kcal Atomic # 14 Polarization: 51.36 SS G_CDS: 2.05 Total: 53.42 kcal Total: -82.65 3.88 -78.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054777186.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.086 kcal (2) G-P(sol) polarization free energy of solvation -82.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds