Wall clock time and date at job start Sat Apr 11 2020 06:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08994 * 110.91432 * 2 1 4 4 C 1.54909 * 111.00288 * 123.90573 * 2 1 3 5 5 N 1.47743 * 104.83995 * 155.16710 * 4 2 1 6 6 C 1.34780 * 125.81887 * 155.82587 * 5 4 2 7 7 O 1.21515 * 120.00196 * 359.93131 * 6 5 4 8 8 C 1.48163 * 119.99712 * 179.97438 * 6 5 4 9 9 C 1.39226 * 119.68741 * 180.02562 * 8 6 5 10 10 C 1.38717 * 119.18801 * 180.02562 * 9 8 6 11 11 C 1.38401 * 118.55701 * 359.97438 * 10 9 8 12 12 C 1.39263 * 119.30337 * 0.02562 * 11 10 9 13 13 N 1.39826 * 119.62015 * 180.02562 * 12 11 10 14 14 C 1.37178 * 126.48801 * 184.71263 * 13 12 11 15 15 C 1.34618 * 106.82774 * 179.89739 * 14 13 12 16 16 N 1.34155 * 108.21591 * 0.36414 * 15 14 13 17 17 C 1.30476 * 109.37895 * 359.76757 * 16 15 14 18 18 N 1.31968 * 120.76011 * 359.72164 * 12 11 10 19 19 C 1.47020 * 108.53125 * 335.74644 * 5 4 2 20 20 C 1.54324 * 107.39983 * 1.18235 * 19 5 4 21 21 H 1.09004 * 110.71964 * 140.48013 * 20 19 5 22 22 N 1.46501 * 110.72010 * 263.75014 * 20 19 5 23 23 C 1.36932 * 120.00386 * 273.54813 * 22 20 19 24 24 H 1.08009 * 119.99883 * 359.97438 * 23 22 20 25 25 C 1.38813 * 120.00314 * 179.97438 * 23 22 20 26 26 N 1.31620 * 119.99858 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00063 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47408 * 59.99735 * 27 25 23 29 29 H 1.48499 * 109.47176 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.47105 * 299.99962 * 27 25 23 31 31 H 1.08996 * 109.46861 * 183.90532 * 1 2 3 32 32 H 1.08998 * 109.46481 * 303.89945 * 1 2 3 33 33 H 1.09002 * 109.46945 * 63.90165 * 1 2 3 34 34 H 1.09003 * 110.36363 * 273.92036 * 4 2 1 35 35 H 1.09001 * 110.36855 * 36.23886 * 4 2 1 36 36 H 1.07994 * 120.40371 * 0.02562 * 9 8 6 37 37 H 1.07998 * 120.72031 * 180.02562 * 10 9 8 38 38 H 1.08001 * 120.34843 * 179.97438 * 11 10 9 39 39 H 1.07996 * 126.58410 * 0.02562 * 14 13 12 40 40 H 1.07998 * 125.89253 * 180.13173 * 15 14 13 41 41 H 1.07992 * 125.72697 * 180.02562 * 17 16 15 42 42 H 1.09002 * 109.88367 * 241.68734 * 19 5 4 43 43 H 1.09000 * 109.88319 * 120.67352 * 19 5 4 44 44 H 0.97003 * 119.99337 * 93.54495 * 22 20 19 45 45 H 0.96993 * 120.00018 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0853 -0.8067 1.2003 5 7 3.4309 -1.2424 0.7733 6 6 4.4539 -1.5596 1.5916 7 8 4.3099 -1.4974 2.7966 8 6 5.7543 -1.9832 1.0218 9 6 6.8065 -2.3099 1.8730 10 6 8.0196 -2.7047 1.3284 11 6 8.1396 -2.7600 -0.0493 12 6 7.0470 -2.4197 -0.8429 13 7 7.1608 -2.4738 -2.2355 14 6 6.2120 -2.0859 -3.1471 15 6 6.7329 -2.3051 -4.3689 16 7 7.9620 -2.8200 -4.2146 17 6 8.2303 -2.9261 -2.9421 18 7 5.9037 -2.0525 -0.2956 19 6 3.4675 -1.2742 -0.6961 20 6 2.0861 -0.8080 -1.2022 21 1 2.1922 -0.1700 -2.0797 22 7 1.2268 -1.9575 -1.4962 23 6 1.2814 -2.5564 -2.7264 24 1 1.9579 -2.1811 -3.4802 25 6 0.4676 -3.6459 -3.0048 26 7 -0.3571 -4.1030 -2.0864 27 14 0.5427 -4.4633 -4.6827 28 1 1.9170 -4.9710 -4.9250 29 1 -0.4182 -5.5946 -4.7257 30 1 0.1885 -3.4736 -5.7318 31 1 -0.3633 -1.0253 0.0700 32 1 -0.3632 0.5732 0.8530 33 1 -0.3633 0.4521 -0.9229 34 1 2.1560 -0.1721 2.0836 35 1 1.4519 -1.6704 1.4024 36 1 6.6797 -2.2566 2.9441 37 1 8.8521 -2.9641 1.9656 38 1 9.0711 -3.0632 -0.5042 39 1 5.2355 -1.6805 -2.9269 40 1 6.2440 -2.1048 -5.3108 41 1 9.1482 -3.3087 -2.5210 42 1 3.6650 -2.2895 -1.0401 43 1 4.2429 -0.6014 -1.0623 44 1 0.6191 -2.2943 -0.8193 45 1 -0.9260 -4.8640 -2.2810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054831394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:26:48 Heat of formation + Delta-G solvation = 106.623341 kcal Electronic energy + Delta-G solvation = -30076.545949 eV Core-core repulsion = 26096.549891 eV Total energy + Delta-G solvation = -3979.996058 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.44613 -40.72706 -39.32939 -37.63897 -34.36330 -34.08546 -33.24507 -32.15381 -30.54063 -30.32785 -29.45619 -27.74736 -26.65919 -24.68001 -24.26240 -23.78598 -22.23722 -21.31036 -21.11703 -19.90475 -19.31735 -18.26459 -17.71126 -17.14072 -16.48605 -16.16859 -16.02238 -15.61119 -15.35798 -14.74911 -14.51498 -14.28923 -13.95857 -13.80795 -13.78251 -13.62872 -13.44117 -13.04737 -13.02023 -12.67678 -12.49364 -12.15537 -11.97648 -11.55150 -11.15624 -10.95613 -10.93917 -10.81941 -10.58830 -10.38704 -10.29697 -10.27103 -10.21489 -9.92353 -9.74909 -9.63599 -9.01167 -8.97560 -8.59721 -8.30250 -7.05959 -5.83814 -3.13456 0.22289 0.63396 1.99513 2.23185 2.76823 3.02928 3.05579 3.40946 3.46174 3.46661 3.64506 3.83609 4.19453 4.43133 4.49657 4.53337 4.56521 4.70522 4.87691 5.02878 5.14649 5.18812 5.29263 5.30531 5.52158 5.54537 5.64594 5.65783 5.68257 5.78664 5.86391 5.96831 5.97455 6.06574 6.18704 6.25873 6.31983 6.38812 6.53542 6.58050 6.62580 6.81417 6.90363 6.94909 7.37538 7.63227 7.72277 7.86584 8.19753 8.34108 9.46102 10.00390 10.35105 11.38349 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008027 B = 0.005041 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3487.245710 B = 5553.653795 C = 8103.480078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.114 4.114 3 H 0.079 0.921 4 C 0.113 3.887 5 N -0.582 5.582 6 C 0.577 3.423 7 O -0.545 6.545 8 C 0.126 3.874 9 C -0.126 4.126 10 C -0.054 4.054 11 C -0.164 4.164 12 C 0.345 3.655 13 N -0.411 5.411 14 C -0.013 4.013 15 C -0.031 4.031 16 N -0.477 5.477 17 C 0.185 3.815 18 N -0.459 5.459 19 C 0.087 3.913 20 C 0.167 3.833 21 H 0.070 0.930 22 N -0.711 5.711 23 C -0.244 4.244 24 H 0.071 0.929 25 C -0.007 4.007 26 N -0.930 5.930 27 Si 0.904 3.096 28 H -0.285 1.285 29 H -0.292 1.292 30 H -0.285 1.285 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.147 0.853 39 H 0.187 0.813 40 H 0.178 0.822 41 H 0.209 0.791 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.386 0.614 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.113 6.569 5.970 18.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.134 4.134 3 H 0.097 0.903 4 C -0.009 4.009 5 N -0.312 5.312 6 C 0.363 3.637 7 O -0.423 6.423 8 C -0.013 4.013 9 C -0.147 4.147 10 C -0.080 4.080 11 C -0.187 4.187 12 C 0.115 3.885 13 N -0.095 5.095 14 C -0.143 4.143 15 C -0.175 4.175 16 N -0.194 5.194 17 C -0.096 4.096 18 N -0.173 5.173 19 C -0.038 4.038 20 C 0.054 3.946 21 H 0.088 0.912 22 N -0.353 5.353 23 C -0.375 4.375 24 H 0.089 0.911 25 C -0.204 4.204 26 N -0.578 5.578 27 Si 0.735 3.265 28 H -0.212 1.212 29 H -0.218 1.218 30 H -0.211 1.211 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.174 0.826 37 H 0.171 0.829 38 H 0.164 0.836 39 H 0.204 0.796 40 H 0.195 0.805 41 H 0.226 0.774 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.222 0.778 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.832 6.514 5.322 17.928 hybrid contribution 0.021 -0.816 0.323 0.877 sum 15.853 5.698 5.645 17.767 Atomic orbital electron populations 1.21543 0.93223 1.03015 1.01043 1.22625 0.97046 0.98452 0.95312 0.90289 1.22435 0.82241 0.98634 0.97546 1.48374 1.11325 1.62719 1.08739 1.17368 0.82282 0.78639 0.85433 1.90772 1.82631 1.55339 1.13580 1.20998 0.95209 0.97689 0.87433 1.22163 0.92247 0.97815 1.02514 1.21482 0.97664 0.94877 0.93936 1.21749 0.98946 1.03455 0.94505 1.18192 0.90588 0.96739 0.82985 1.43124 1.15493 1.47641 1.03200 1.23152 0.96684 1.05900 0.88517 1.22422 0.92437 1.04953 0.97736 1.70302 1.16095 1.17630 1.15386 1.25242 0.93501 1.03961 0.86899 1.67272 1.22509 1.14110 1.13417 1.23396 1.00091 1.02957 0.77372 1.21330 0.88744 0.89877 0.94606 0.91218 1.42433 1.45377 1.32743 1.14706 1.19146 1.18464 1.09371 0.90481 0.91073 1.24718 0.98980 0.98861 0.97823 1.69638 1.27332 1.27573 1.33253 0.86316 0.77278 0.78980 0.83909 1.21182 1.21766 1.21126 0.91159 0.93654 0.91999 0.90974 0.90739 0.82647 0.82936 0.83569 0.79614 0.80520 0.77421 0.89809 0.92276 0.77809 0.93380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.85 37.16 0.33 -1.66 16 2 C -0.11 -1.74 3.51 -88.47 -0.31 -2.05 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.11 1.83 6.38 -2.35 -0.02 1.81 16 5 N -0.58 -9.90 3.34 -171.25 -0.57 -10.47 16 6 C 0.58 9.78 7.84 -12.18 -0.10 9.68 16 7 O -0.54 -10.11 16.59 5.35 0.09 -10.02 16 8 C 0.13 1.82 6.72 -83.02 -0.56 1.26 16 9 C -0.13 -1.37 9.63 -39.04 -0.38 -1.75 16 10 C -0.05 -0.42 10.16 -39.34 -0.40 -0.82 16 11 C -0.16 -1.42 9.51 -39.14 -0.37 -1.79 16 12 C 0.35 4.29 7.50 -154.53 -1.16 3.13 16 13 N -0.41 -5.31 2.98 -63.81 -0.19 -5.50 16 14 C -0.01 -0.19 11.17 -16.44 -0.18 -0.37 16 15 C -0.03 -0.44 11.85 -17.82 -0.21 -0.65 16 16 N -0.48 -6.71 11.24 -14.46 -0.16 -6.88 16 17 C 0.19 2.13 11.89 -89.57 -1.07 1.06 16 18 N -0.46 -6.66 6.37 -8.85 -0.06 -6.71 16 19 C 0.09 1.50 5.02 -3.06 -0.02 1.49 16 20 C 0.17 3.00 3.37 -66.09 -0.22 2.78 16 21 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 22 N -0.71 -16.20 4.61 -51.65 -0.24 -16.44 16 23 C -0.24 -6.26 9.98 -15.06 -0.15 -6.41 16 24 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 25 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 26 N -0.93 -27.02 13.06 55.49 0.72 -26.29 16 27 Si 0.90 21.76 29.55 -169.99 -5.02 16.74 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 29 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 30 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 31 H 0.07 1.25 6.38 -51.93 -0.33 0.92 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.09 8.05 -51.93 -0.42 0.67 16 35 H 0.07 1.31 7.98 -51.93 -0.41 0.90 16 36 H 0.16 1.54 7.63 -52.49 -0.40 1.14 16 37 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.15 0.76 6.77 -52.49 -0.36 0.41 16 39 H 0.19 2.67 7.84 -52.49 -0.41 2.26 16 40 H 0.18 2.11 8.06 -52.49 -0.42 1.69 16 41 H 0.21 1.42 7.06 -52.49 -0.37 1.05 16 42 H 0.08 1.69 7.43 -51.93 -0.39 1.30 16 43 H 0.06 0.94 7.30 -51.93 -0.38 0.56 16 44 H 0.39 9.50 6.10 -40.82 -0.25 9.25 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 375.29 15.07 5.66 5.66 Total: -1.00 -32.76 375.29 -10.47 -43.23 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -5.80 Total: 11.27 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: -4.90 Total: 5.42 kcal Atomic # 7 Polarization: -71.80 SS G_CDS: -0.49 Total: -72.29 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.76 -10.47 -43.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054831394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.852 kcal (2) G-P(sol) polarization free energy of solvation -32.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds