Wall clock time and date at job start Sat Apr 11 2020 06:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08994 * 110.91432 * 2 1 4 4 C 1.54909 * 111.00288 * 123.90573 * 2 1 3 5 5 N 1.47743 * 104.83995 * 155.16710 * 4 2 1 6 6 C 1.34780 * 125.81887 * 155.82587 * 5 4 2 7 7 O 1.21515 * 120.00196 * 359.93131 * 6 5 4 8 8 C 1.48163 * 119.99712 * 179.97438 * 6 5 4 9 9 C 1.39226 * 119.68741 * 180.02562 * 8 6 5 10 10 C 1.38717 * 119.18801 * 180.02562 * 9 8 6 11 11 C 1.38401 * 118.55701 * 359.97438 * 10 9 8 12 12 C 1.39263 * 119.30337 * 0.02562 * 11 10 9 13 13 N 1.39826 * 119.62015 * 180.02562 * 12 11 10 14 14 C 1.37178 * 126.48801 * 184.71263 * 13 12 11 15 15 C 1.34618 * 106.82774 * 179.89739 * 14 13 12 16 16 N 1.34155 * 108.21591 * 0.36414 * 15 14 13 17 17 C 1.30476 * 109.37895 * 359.76757 * 16 15 14 18 18 N 1.31968 * 120.76011 * 359.72164 * 12 11 10 19 19 C 1.47020 * 108.53125 * 335.74644 * 5 4 2 20 20 C 1.54324 * 107.39983 * 1.18235 * 19 5 4 21 21 H 1.09004 * 110.71964 * 140.48013 * 20 19 5 22 22 N 1.46501 * 110.72010 * 263.75014 * 20 19 5 23 23 C 1.36932 * 120.00386 * 273.54813 * 22 20 19 24 24 H 1.08009 * 119.99883 * 359.97438 * 23 22 20 25 25 C 1.38813 * 120.00314 * 179.97438 * 23 22 20 26 26 N 1.31620 * 119.99858 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00063 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47408 * 59.99735 * 27 25 23 29 29 H 1.48499 * 109.47176 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.47105 * 299.99962 * 27 25 23 31 31 H 1.08996 * 109.46861 * 183.90532 * 1 2 3 32 32 H 1.08998 * 109.46481 * 303.89945 * 1 2 3 33 33 H 1.09002 * 109.46945 * 63.90165 * 1 2 3 34 34 H 1.09003 * 110.36363 * 273.92036 * 4 2 1 35 35 H 1.09001 * 110.36855 * 36.23886 * 4 2 1 36 36 H 1.07994 * 120.40371 * 0.02562 * 9 8 6 37 37 H 1.07998 * 120.72031 * 180.02562 * 10 9 8 38 38 H 1.08001 * 120.34843 * 179.97438 * 11 10 9 39 39 H 1.07996 * 126.58410 * 0.02562 * 14 13 12 40 40 H 1.07998 * 125.89253 * 180.13173 * 15 14 13 41 41 H 1.07992 * 125.72697 * 180.02562 * 17 16 15 42 42 H 1.09002 * 109.88367 * 241.68734 * 19 5 4 43 43 H 1.09000 * 109.88319 * 120.67352 * 19 5 4 44 44 H 0.97003 * 119.99337 * 93.54495 * 22 20 19 45 45 H 0.96993 * 120.00018 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0853 -0.8067 1.2003 5 7 3.4309 -1.2424 0.7733 6 6 4.4539 -1.5596 1.5916 7 8 4.3099 -1.4974 2.7966 8 6 5.7543 -1.9832 1.0218 9 6 6.8065 -2.3099 1.8730 10 6 8.0196 -2.7047 1.3284 11 6 8.1396 -2.7600 -0.0493 12 6 7.0470 -2.4197 -0.8429 13 7 7.1608 -2.4738 -2.2355 14 6 6.2120 -2.0859 -3.1471 15 6 6.7329 -2.3051 -4.3689 16 7 7.9620 -2.8200 -4.2146 17 6 8.2303 -2.9261 -2.9421 18 7 5.9037 -2.0525 -0.2956 19 6 3.4675 -1.2742 -0.6961 20 6 2.0861 -0.8080 -1.2022 21 1 2.1922 -0.1700 -2.0797 22 7 1.2268 -1.9575 -1.4962 23 6 1.2814 -2.5564 -2.7264 24 1 1.9579 -2.1811 -3.4802 25 6 0.4676 -3.6459 -3.0048 26 7 -0.3571 -4.1030 -2.0864 27 14 0.5427 -4.4633 -4.6827 28 1 1.9170 -4.9710 -4.9250 29 1 -0.4182 -5.5946 -4.7257 30 1 0.1885 -3.4736 -5.7318 31 1 -0.3633 -1.0253 0.0700 32 1 -0.3632 0.5732 0.8530 33 1 -0.3633 0.4521 -0.9229 34 1 2.1560 -0.1721 2.0836 35 1 1.4519 -1.6704 1.4024 36 1 6.6797 -2.2566 2.9441 37 1 8.8521 -2.9641 1.9656 38 1 9.0711 -3.0632 -0.5042 39 1 5.2355 -1.6805 -2.9269 40 1 6.2440 -2.1048 -5.3108 41 1 9.1482 -3.3087 -2.5210 42 1 3.6650 -2.2895 -1.0401 43 1 4.2429 -0.6014 -1.0623 44 1 0.6191 -2.2943 -0.8193 45 1 -0.9260 -4.8640 -2.2810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054831394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:26:47 Heat of formation + Delta-G solvation = 88.036677 kcal Electronic energy + Delta-G solvation = -30077.351927 eV Core-core repulsion = 26096.549891 eV Total energy + Delta-G solvation = -3980.802037 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.38119 -41.78753 -40.51183 -39.02049 -35.76897 -35.28977 -34.39467 -33.45040 -32.23298 -31.29294 -30.43525 -29.34743 -27.87352 -25.92447 -25.47553 -25.14709 -23.54303 -22.32299 -22.12133 -20.95313 -20.73675 -19.49272 -19.26813 -18.46379 -17.43880 -17.25036 -17.00943 -16.78885 -16.59676 -16.40904 -15.93183 -15.48885 -15.26865 -14.97115 -14.83067 -14.63577 -14.63229 -14.43180 -14.19044 -14.09053 -13.59258 -13.37966 -13.18904 -13.07906 -12.88413 -12.77930 -12.36532 -12.20596 -12.06861 -11.86599 -11.64519 -11.48808 -11.34846 -11.23511 -11.10356 -11.05512 -10.63458 -9.97699 -9.73035 -9.50915 -8.99960 -7.92756 -5.19956 -0.64631 -0.18968 1.07993 1.34773 1.47575 1.49075 1.54130 1.62712 1.83416 2.06618 2.56297 2.68414 2.83712 3.38448 3.41351 3.48103 3.64901 3.70148 3.84089 3.87488 3.90781 3.93237 4.05888 4.21114 4.35075 4.40805 4.44817 4.56340 4.58965 4.65640 4.71162 4.80373 4.87312 4.91841 4.98696 5.00480 5.05973 5.21531 5.23094 5.29076 5.34202 5.53227 5.58422 5.61978 6.04927 6.28687 6.36643 6.49614 6.89150 6.94195 7.36691 8.10258 8.33732 9.30498 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008027 B = 0.005041 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3487.245710 B = 5553.653795 C = 8103.480078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.099 4.099 3 H 0.109 0.891 4 C 0.113 3.887 5 N -0.591 5.591 6 C 0.571 3.429 7 O -0.569 6.569 8 C 0.089 3.911 9 C -0.120 4.120 10 C -0.035 4.035 11 C -0.140 4.140 12 C 0.319 3.681 13 N -0.415 5.415 14 C -0.039 4.039 15 C -0.040 4.040 16 N -0.511 5.511 17 C 0.204 3.796 18 N -0.489 5.489 19 C 0.113 3.887 20 C 0.157 3.843 21 H 0.078 0.922 22 N -0.720 5.720 23 C -0.230 4.230 24 H 0.080 0.920 25 C -0.070 4.070 26 N -0.969 5.969 27 Si 0.962 3.038 28 H -0.285 1.285 29 H -0.301 1.301 30 H -0.274 1.274 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.051 0.949 36 H 0.163 0.837 37 H 0.205 0.795 38 H 0.192 0.808 39 H 0.172 0.828 40 H 0.185 0.815 41 H 0.258 0.742 42 H 0.050 0.950 43 H 0.072 0.928 44 H 0.375 0.625 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.765 7.161 6.529 22.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.119 4.119 3 H 0.127 0.873 4 C -0.009 4.009 5 N -0.320 5.320 6 C 0.359 3.641 7 O -0.449 6.449 8 C -0.049 4.049 9 C -0.141 4.141 10 C -0.060 4.060 11 C -0.162 4.162 12 C 0.088 3.912 13 N -0.098 5.098 14 C -0.169 4.169 15 C -0.183 4.183 16 N -0.228 5.228 17 C -0.078 4.078 18 N -0.204 5.204 19 C -0.012 4.012 20 C 0.046 3.954 21 H 0.096 0.904 22 N -0.360 5.360 23 C -0.362 4.362 24 H 0.097 0.903 25 C -0.263 4.263 26 N -0.620 5.620 27 Si 0.792 3.208 28 H -0.211 1.211 29 H -0.228 1.228 30 H -0.200 1.200 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.069 0.931 36 H 0.180 0.820 37 H 0.222 0.778 38 H 0.209 0.791 39 H 0.189 0.811 40 H 0.202 0.798 41 H 0.274 0.726 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.209 0.791 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 19.510 7.157 5.883 21.598 hybrid contribution -0.948 -0.964 0.234 1.372 sum 18.562 6.193 6.117 20.502 Atomic orbital electron populations 1.21464 0.93099 1.01436 1.02141 1.22589 0.97012 0.99201 0.93062 0.87275 1.22423 0.81869 0.98093 0.98520 1.48479 1.11760 1.63238 1.08550 1.17921 0.83226 0.77736 0.85240 1.90733 1.83403 1.56362 1.14416 1.20727 0.94972 1.01133 0.88088 1.22409 0.92534 0.96664 1.02542 1.22047 0.97456 0.92415 0.94098 1.22303 0.99034 1.00337 0.94538 1.18594 0.91372 0.98261 0.82954 1.43240 1.15460 1.47626 1.03498 1.23031 0.97030 1.07569 0.89273 1.22623 0.92818 1.04836 0.98048 1.70310 1.16194 1.19237 1.17064 1.26208 0.94008 1.01377 0.86166 1.66987 1.24415 1.15210 1.13740 1.22935 0.99460 1.01135 0.77703 1.21582 0.88624 0.88868 0.96278 0.90384 1.42557 1.45948 1.33907 1.13593 1.19541 1.16786 1.08421 0.91406 0.90252 1.25398 0.99787 1.00274 1.00804 1.69794 1.28912 1.28283 1.34986 0.85380 0.76718 0.77874 0.80824 1.21124 1.22798 1.20031 0.94305 0.90752 0.92337 0.89571 0.93062 0.81986 0.77842 0.79058 0.81067 0.79830 0.72596 0.93159 0.90952 0.79107 0.94313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.75 8.85 71.99 0.64 -3.11 16 2 C -0.10 -2.97 3.51 -9.40 -0.03 -3.00 16 3 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 4 C 0.11 3.70 6.38 86.79 0.55 4.25 16 5 N -0.59 -20.57 3.34 -814.01 -2.72 -23.28 16 6 C 0.57 19.67 7.84 86.88 0.68 20.35 16 7 O -0.57 -21.37 16.59 -3.76 -0.06 -21.43 16 8 C 0.09 2.52 6.72 41.88 0.28 2.80 16 9 C -0.12 -2.32 9.63 22.62 0.22 -2.10 16 10 C -0.03 -0.37 10.16 22.42 0.23 -0.14 16 11 C -0.14 -1.75 9.51 22.56 0.21 -1.53 16 12 C 0.32 7.26 7.50 132.94 1.00 8.26 16 13 N -0.42 -10.06 2.98 -355.81 -1.06 -11.12 16 14 C -0.04 -1.13 11.17 83.03 0.93 -0.20 16 15 C -0.04 -1.10 11.85 83.51 0.99 -0.11 16 16 N -0.51 -13.61 11.24 -199.68 -2.24 -15.86 16 17 C 0.20 4.06 11.89 179.98 2.14 6.20 16 18 N -0.49 -14.04 6.37 -181.91 -1.16 -15.20 16 19 C 0.11 4.00 5.02 86.73 0.44 4.44 16 20 C 0.16 5.73 3.37 46.18 0.16 5.88 16 21 H 0.08 2.74 8.12 -2.38 -0.02 2.72 16 22 N -0.72 -33.95 4.61 -317.31 -1.46 -35.41 16 23 C -0.23 -12.09 9.98 84.03 0.84 -11.25 16 24 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 25 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 26 N -0.97 -58.54 13.06 21.65 0.28 -58.25 16 27 Si 0.96 45.92 29.55 68.60 2.03 47.95 16 28 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 29 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 30 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 31 H 0.04 1.43 6.38 -2.39 -0.02 1.41 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.09 2.57 8.05 -2.39 -0.02 2.55 16 35 H 0.05 1.90 7.98 -2.39 -0.02 1.89 16 36 H 0.16 2.86 7.63 -2.91 -0.02 2.84 16 37 H 0.20 0.14 8.06 -2.91 -0.02 0.12 16 38 H 0.19 0.60 6.77 -2.91 -0.02 0.58 16 39 H 0.17 5.25 7.84 -2.91 -0.02 5.23 16 40 H 0.18 4.49 8.06 -2.91 -0.02 4.47 16 41 H 0.26 2.05 7.06 -2.91 -0.02 2.03 16 42 H 0.05 2.13 7.43 -2.39 -0.02 2.12 16 43 H 0.07 2.35 7.30 -2.39 -0.02 2.34 16 44 H 0.38 19.39 6.10 -92.71 -0.57 18.83 16 45 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -76.34 375.29 3.80 -72.54 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.46 Total: 32.81 kcal Atomic # 6 Polarization: 17.52 SS G_CDS: 9.73 Total: 27.26 kcal Atomic # 7 Polarization: -150.76 SS G_CDS: -8.36 Total: -159.12 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.06 Total: -21.43 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -76.34 3.80 -72.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054831394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.576 kcal (2) G-P(sol) polarization free energy of solvation -76.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds