Wall clock time and date at job start Sat Apr 11 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.88618 * 2 1 4 4 C 1.54906 * 111.00613 * 236.11617 * 2 1 3 5 5 N 1.47423 * 104.83400 * 204.87865 * 4 2 1 6 6 C 1.34772 * 125.64823 * 204.09196 * 5 4 2 7 7 O 1.21516 * 120.00580 * 359.97438 * 6 5 4 8 8 C 1.48171 * 119.99931 * 180.02562 * 6 5 4 9 9 C 1.39222 * 119.68403 * 180.02562 * 8 6 5 10 10 C 1.38718 * 119.18717 * 180.02562 * 9 8 6 11 11 C 1.38408 * 118.55607 * 359.97438 * 10 9 8 12 12 C 1.39259 * 119.30095 * 359.97438 * 11 10 9 13 13 N 1.39824 * 119.62245 * 179.97438 * 12 11 10 14 14 C 1.37174 * 126.49260 * 185.01787 * 13 12 11 15 15 C 1.34611 * 106.82898 * 179.97438 * 14 13 12 16 16 N 1.34148 * 108.21955 * 0.02562 * 15 14 13 17 17 C 1.30482 * 109.37325 * 359.97438 * 16 15 14 18 18 N 1.31973 * 120.76263 * 0.25749 * 12 11 10 19 19 C 1.47022 * 108.70344 * 24.36014 * 5 4 2 20 20 C 1.54340 * 107.26328 * 358.58268 * 19 5 4 21 21 H 1.09000 * 110.66700 * 96.52939 * 20 19 5 22 22 N 1.46507 * 110.84800 * 219.67617 * 20 19 5 23 23 C 1.36934 * 119.99633 * 268.69215 * 22 20 19 24 24 H 1.07994 * 120.00483 * 0.02562 * 23 22 20 25 25 C 1.38818 * 119.99973 * 180.02562 * 23 22 20 26 26 N 1.31610 * 120.00314 * 180.02562 * 25 23 22 27 27 Si 1.86807 * 119.99376 * 0.02562 * 25 23 22 28 28 H 1.48496 * 109.47069 * 90.00364 * 27 25 23 29 29 H 1.48505 * 109.46599 * 209.99988 * 27 25 23 30 30 H 1.48491 * 109.47315 * 329.99871 * 27 25 23 31 31 H 1.08999 * 109.47262 * 182.43066 * 1 2 3 32 32 H 1.08999 * 109.47116 * 302.42757 * 1 2 3 33 33 H 1.08998 * 109.46937 * 62.43195 * 1 2 3 34 34 H 1.08998 * 110.36723 * 86.03883 * 4 2 1 35 35 H 1.09000 * 110.46007 * 323.76796 * 4 2 1 36 36 H 1.08000 * 120.40774 * 0.03339 * 9 8 6 37 37 H 1.07994 * 120.72460 * 180.02562 * 10 9 8 38 38 H 1.07997 * 120.35267 * 179.97438 * 11 10 9 39 39 H 1.08008 * 126.58627 * 359.97438 * 14 13 12 40 40 H 1.08005 * 125.89060 * 180.02562 * 15 14 13 41 41 H 1.07996 * 125.71988 * 180.26878 * 17 16 15 42 42 H 1.08996 * 109.88807 * 118.13144 * 19 5 4 43 43 H 1.09005 * 109.88139 * 239.29916 * 19 5 4 44 44 H 0.96995 * 119.99887 * 88.69077 * 22 20 19 45 45 H 0.97002 * 120.00318 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8062 -1.2005 5 7 3.4275 -1.2420 -0.7740 6 6 4.4479 -1.5599 -1.5951 7 8 4.3002 -1.4990 -2.7997 8 6 5.7496 -1.9849 -1.0289 9 6 6.7994 -2.3113 -1.8832 10 6 8.0133 -2.7084 -1.3420 11 6 8.1368 -2.7652 0.0354 12 6 7.0467 -2.4240 0.8320 13 7 7.1638 -2.4795 2.2242 14 6 6.1611 -2.2693 3.1363 15 6 6.7071 -2.4198 4.3574 16 7 8.0068 -2.7133 4.2024 17 6 8.2930 -2.7523 2.9300 18 7 5.9026 -2.0542 0.2880 19 6 3.4667 -1.2786 0.6952 20 6 2.0869 -0.8078 1.2020 21 1 1.4464 -1.6616 1.4228 22 7 2.2294 0.0497 2.3813 23 6 2.2014 -0.5003 3.6351 24 1 2.0747 -1.5661 3.7545 25 6 2.3359 0.3121 4.7526 26 7 2.3095 -0.2165 5.9576 27 14 2.5543 2.1559 4.5459 28 1 1.2231 2.8139 4.5352 29 1 3.3605 2.6882 5.6737 30 1 3.2529 2.4310 3.2648 31 1 -0.3634 -1.0267 0.0436 32 1 -0.3633 0.5511 0.8674 33 1 -0.3633 0.4756 -0.9110 34 1 2.1554 -0.1715 -2.0838 35 1 1.4529 -1.6703 -1.4044 36 1 6.6702 -2.2559 -2.9540 37 1 8.8443 -2.9668 -1.9815 38 1 9.0687 -3.0709 0.4876 39 1 5.1312 -2.0290 2.9168 40 1 6.1882 -2.3213 5.2995 41 1 9.2633 -2.9693 2.5083 42 1 3.6617 -2.2954 1.0357 43 1 4.2431 -0.6072 1.0622 44 1 2.3436 1.0069 2.2740 45 1 2.4031 0.3513 6.7385 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054831397.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:36 Heat of formation + Delta-G solvation = 107.354850 kcal Electronic energy + Delta-G solvation = -30138.152578 eV Core-core repulsion = 26158.188240 eV Total energy + Delta-G solvation = -3979.964338 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.29570 -40.75074 -39.40216 -37.71524 -34.32960 -34.25674 -33.36173 -32.27049 -31.06608 -30.29705 -29.27325 -27.96323 -26.82538 -24.74185 -24.20070 -23.65644 -21.76586 -21.08055 -20.92113 -20.22985 -19.86248 -18.25442 -17.64478 -17.40642 -16.48397 -16.38526 -15.95384 -15.72479 -15.45828 -14.89465 -14.41170 -14.20933 -13.82622 -13.72597 -13.62784 -13.52092 -13.27517 -13.23716 -13.17369 -12.65624 -12.59769 -12.43848 -12.29111 -11.72990 -11.47447 -11.21321 -10.88882 -10.84934 -10.69075 -10.50385 -10.36802 -10.30712 -10.05100 -10.02757 -9.78528 -9.65771 -9.00988 -8.93351 -8.49846 -8.36013 -7.40452 -5.85706 -3.23257 0.21993 0.64665 2.09623 2.33721 2.73719 2.90127 3.27501 3.31899 3.34791 3.41497 3.61441 3.82073 4.22389 4.40251 4.51323 4.52887 4.62623 4.76120 4.79685 4.95190 4.99492 5.06830 5.25040 5.34360 5.40929 5.51295 5.62115 5.66186 5.69915 5.76329 5.78697 5.80691 5.90136 6.05635 6.08646 6.10621 6.19613 6.30511 6.39741 6.45986 6.46957 6.75760 6.88043 7.07860 7.42086 7.55463 7.87855 8.05183 8.07995 8.32467 9.09024 9.81888 10.00107 11.31499 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008046 B = 0.005547 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3479.068521 B = 5046.669505 C = 8005.165621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.119 4.119 3 H 0.081 0.919 4 C 0.112 3.888 5 N -0.590 5.590 6 C 0.579 3.421 7 O -0.543 6.543 8 C 0.122 3.878 9 C -0.129 4.129 10 C -0.053 4.053 11 C -0.164 4.164 12 C 0.352 3.648 13 N -0.416 5.416 14 C -0.009 4.009 15 C -0.025 4.025 16 N -0.476 5.476 17 C 0.177 3.823 18 N -0.461 5.461 19 C 0.089 3.911 20 C 0.177 3.823 21 H 0.077 0.923 22 N -0.734 5.734 23 C -0.252 4.252 24 H 0.093 0.907 25 C 0.016 3.984 26 N -0.925 5.925 27 Si 0.878 3.122 28 H -0.284 1.284 29 H -0.290 1.290 30 H -0.278 1.278 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.193 0.807 40 H 0.182 0.818 41 H 0.207 0.793 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.363 0.637 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.101 -4.822 -15.427 18.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.139 4.139 3 H 0.099 0.901 4 C -0.010 4.010 5 N -0.321 5.321 6 C 0.366 3.634 7 O -0.421 6.421 8 C -0.018 4.018 9 C -0.150 4.150 10 C -0.079 4.079 11 C -0.187 4.187 12 C 0.121 3.879 13 N -0.100 5.100 14 C -0.137 4.137 15 C -0.168 4.168 16 N -0.193 5.193 17 C -0.104 4.104 18 N -0.175 5.175 19 C -0.036 4.036 20 C 0.065 3.935 21 H 0.095 0.905 22 N -0.375 5.375 23 C -0.382 4.382 24 H 0.111 0.889 25 C -0.181 4.181 26 N -0.572 5.572 27 Si 0.708 3.292 28 H -0.210 1.210 29 H -0.217 1.217 30 H -0.205 1.205 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.172 0.828 37 H 0.170 0.830 38 H 0.165 0.835 39 H 0.210 0.790 40 H 0.199 0.801 41 H 0.224 0.776 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.197 0.803 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.831 -4.864 -14.690 17.817 hybrid contribution 0.441 1.329 -0.985 1.712 sum 9.272 -3.534 -15.676 18.552 Atomic orbital electron populations 1.21608 0.93515 1.02201 1.01771 1.22705 0.96633 0.99646 0.94905 0.90083 1.22352 0.82271 0.98471 0.97905 1.48381 1.11506 1.63275 1.08925 1.17422 0.82292 0.78362 0.85361 1.90773 1.82511 1.55199 1.13630 1.20937 0.95152 0.98115 0.87607 1.22126 0.92322 0.98223 1.02362 1.21477 0.97572 0.94912 0.93983 1.21776 0.99144 1.03345 0.94439 1.18214 0.90572 0.95815 0.83251 1.43168 1.11171 1.52695 1.03005 1.23334 0.95837 1.06125 0.88392 1.22544 0.90230 1.05810 0.98246 1.70313 1.15845 1.17887 1.15212 1.25210 0.91887 1.06181 0.87083 1.67293 1.23141 1.13777 1.13290 1.23386 1.01619 1.02243 0.76365 1.21344 0.92341 0.93732 0.86057 0.90544 1.42692 1.87986 1.04985 1.01852 1.19028 1.43424 0.94596 0.81135 0.88949 1.24614 1.01369 0.97042 0.95092 1.69677 1.56107 1.34424 0.96944 0.86668 0.77883 0.87578 0.77042 1.21047 1.21678 1.20454 0.92431 0.91448 0.93081 0.90604 0.91011 0.82760 0.82984 0.83515 0.78983 0.80092 0.77617 0.91351 0.90242 0.80347 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 9.30 37.16 0.35 -1.33 16 2 C -0.12 -1.69 3.27 -88.47 -0.29 -1.98 16 3 H 0.08 1.20 8.01 -51.93 -0.42 0.79 16 4 C 0.11 1.53 6.37 -2.53 -0.02 1.52 16 5 N -0.59 -9.08 3.33 -171.50 -0.57 -9.65 16 6 C 0.58 9.03 7.84 -12.18 -0.10 8.93 16 7 O -0.54 -9.24 16.57 5.35 0.09 -9.15 16 8 C 0.12 1.67 6.72 -83.02 -0.56 1.11 16 9 C -0.13 -1.33 9.63 -39.04 -0.38 -1.71 16 10 C -0.05 -0.41 10.16 -39.34 -0.40 -0.81 16 11 C -0.16 -1.46 9.51 -39.14 -0.37 -1.83 16 12 C 0.35 4.54 7.50 -154.53 -1.16 3.38 16 13 N -0.42 -5.91 2.98 -63.81 -0.19 -6.10 16 14 C -0.01 -0.14 11.17 -16.44 -0.18 -0.33 16 15 C -0.02 -0.43 11.85 -17.82 -0.21 -0.64 16 16 N -0.48 -7.66 11.24 -14.47 -0.16 -7.82 16 17 C 0.18 2.28 11.89 -89.58 -1.07 1.22 16 18 N -0.46 -6.68 6.38 -8.85 -0.06 -6.74 16 19 C 0.09 1.48 5.05 -3.06 -0.02 1.46 16 20 C 0.18 3.05 3.08 -66.08 -0.20 2.85 16 21 H 0.08 1.35 7.96 -51.93 -0.41 0.94 16 22 N -0.73 -15.56 4.96 -51.64 -0.26 -15.82 16 23 C -0.25 -6.40 10.44 -15.06 -0.16 -6.56 16 24 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 25 C 0.02 0.43 5.50 -17.43 -0.10 0.33 16 26 N -0.93 -27.15 13.97 55.49 0.78 -26.38 16 27 Si 0.88 21.05 27.74 -169.99 -4.71 16.34 16 28 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 29 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 30 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 31 H 0.06 0.69 8.11 -51.93 -0.42 0.27 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 1.00 8.04 -51.93 -0.42 0.59 16 35 H 0.07 0.90 8.04 -51.93 -0.42 0.48 16 36 H 0.15 1.43 7.63 -52.49 -0.40 1.03 16 37 H 0.15 0.59 8.06 -52.49 -0.42 0.16 16 38 H 0.15 0.82 6.77 -52.49 -0.36 0.47 16 39 H 0.19 3.50 7.95 -52.48 -0.42 3.08 16 40 H 0.18 3.06 8.06 -52.48 -0.42 2.64 16 41 H 0.21 1.62 7.06 -52.49 -0.37 1.25 16 42 H 0.07 1.17 7.54 -51.93 -0.39 0.78 16 43 H 0.08 1.47 7.29 -51.93 -0.38 1.10 16 44 H 0.36 7.79 5.62 -40.82 -0.23 7.56 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 375.95 15.07 5.67 5.67 Total: -1.00 -32.12 375.95 -10.18 -42.31 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -5.91 Total: 11.74 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: -4.85 Total: 5.62 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -0.46 Total: -72.51 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.71 Total: 16.34 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.12 -10.18 -42.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054831397.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.661 kcal (2) G-P(sol) polarization free energy of solvation -32.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds