Wall clock time and date at job start Sat Apr 11 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.64202 * 2 1 4 4 C 1.54319 * 110.87401 * 123.25036 * 2 1 3 5 5 N 1.47018 * 107.27536 * 140.62577 * 4 2 1 6 6 C 1.34773 * 125.65510 * 181.10480 * 5 4 2 7 7 O 1.21597 * 119.99663 * 359.97321 * 6 5 4 8 8 C 1.47507 * 120.00413 * 179.97438 * 6 5 4 9 9 C 1.36627 * 125.76756 * 179.97438 * 8 6 5 10 10 N 1.35077 * 106.79215 * 180.02562 * 9 8 6 11 11 C 1.40228 * 126.61054 * 179.97438 * 10 9 8 12 12 C 1.38825 * 120.06332 * 359.73519 * 11 10 9 13 13 C 1.38128 * 119.93040 * 179.71721 * 12 11 10 14 14 C 1.38274 * 120.06445 * 0.53089 * 13 12 11 15 15 C 1.38281 * 120.13417 * 359.76452 * 14 13 12 16 16 C 1.38119 * 120.06451 * 359.95494 * 15 14 13 17 17 N 1.40210 * 106.77475 * 0.02562 * 10 9 8 18 18 N 1.28753 * 108.38790 * 359.72282 * 17 10 9 19 19 C 1.47422 * 108.70074 * 1.05815 * 5 4 2 20 20 C 1.54912 * 104.83500 * 335.87099 * 19 5 4 21 21 H 1.09004 * 111.03866 * 155.09187 * 20 19 5 22 22 N 1.46501 * 111.00592 * 278.93728 * 20 19 5 23 23 C 1.36932 * 119.99720 * 267.19443 * 22 20 19 24 24 H 1.08009 * 120.00252 * 359.97438 * 23 22 20 25 25 C 1.38817 * 120.00195 * 179.97438 * 23 22 20 26 26 N 1.31615 * 120.00080 * 179.97438 * 25 23 22 27 27 Si 1.86803 * 119.99398 * 359.97438 * 25 23 22 28 28 H 1.48497 * 109.47162 * 90.00418 * 27 25 23 29 29 H 1.48505 * 109.46715 * 209.99979 * 27 25 23 30 30 H 1.48501 * 109.47318 * 329.99963 * 27 25 23 31 31 H 1.09006 * 109.47176 * 180.70018 * 1 2 3 32 32 H 1.09005 * 109.47062 * 300.69701 * 1 2 3 33 33 H 1.08998 * 109.47130 * 60.69940 * 1 2 3 34 34 H 1.09001 * 109.88349 * 260.04422 * 4 2 1 35 35 H 1.09003 * 109.88537 * 21.20839 * 4 2 1 36 36 H 1.08002 * 126.60164 * 359.97438 * 9 8 6 37 37 H 1.08002 * 120.03747 * 359.97438 * 12 11 10 38 38 H 1.08003 * 119.96774 * 180.28806 * 13 12 11 39 39 H 1.08004 * 119.93418 * 179.74410 * 14 13 12 40 40 H 1.07997 * 119.97040 * 179.97438 * 15 14 13 41 41 H 1.07992 * 120.03570 * 180.02562 * 16 15 14 42 42 H 1.09003 * 110.37241 * 217.03467 * 19 5 4 43 43 H 1.08998 * 110.46196 * 94.75616 * 19 5 4 44 44 H 0.97001 * 119.99779 * 87.18834 * 22 20 19 45 45 H 0.97000 * 119.99425 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0799 -0.7906 1.2058 5 7 3.2494 -1.5470 0.7353 6 6 3.9995 -2.3797 1.4838 7 8 3.7276 -2.5549 2.6560 8 6 5.1503 -3.0786 0.8813 9 6 5.9867 -3.9442 1.5277 10 7 6.8991 -4.3559 0.6207 11 6 7.9546 -5.2518 0.8436 12 6 8.1422 -5.8060 2.1025 13 6 9.1793 -6.6927 2.3176 14 6 10.0366 -7.0200 1.2833 15 6 9.8558 -6.4648 0.0297 16 6 8.8172 -5.5821 -0.1929 17 7 6.5880 -3.7139 -0.5863 18 7 5.5507 -2.9748 -0.3976 19 6 3.4651 -1.2447 -0.6914 20 6 2.0789 -0.7934 -1.2152 21 1 2.1813 -0.1491 -2.0884 22 7 1.2293 -1.9486 -1.5152 23 6 1.2036 -2.4691 -2.7815 24 1 1.8093 -2.0277 -3.5592 25 6 0.3990 -3.5640 -3.0657 26 7 0.3740 -4.0640 -4.2829 27 14 -0.6480 -4.3278 -1.7204 28 1 -1.9791 -3.6700 -1.6955 29 1 -0.8177 -5.7785 -1.9888 30 1 0.0205 -4.1423 -0.4074 31 1 -0.3634 -1.0276 0.0126 32 1 -0.3633 0.5246 0.8837 33 1 -0.3633 0.5029 -0.8962 34 1 2.3775 -0.1016 1.9963 35 1 1.3191 -1.4773 1.5770 36 1 5.9298 -4.2413 2.5645 37 1 7.4756 -5.5473 2.9119 38 1 9.3230 -7.1277 3.2956 39 1 10.8493 -7.7103 1.4549 40 1 10.5273 -6.7220 -0.7761 41 1 8.6762 -5.1491 -1.1721 42 1 3.7992 -2.1364 -1.2219 43 1 4.1933 -0.4416 -0.8048 44 1 0.6851 -2.3448 -0.8167 45 1 -0.1880 -4.8293 -4.4814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054842285.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:39 Heat of formation + Delta-G solvation = 125.946951 kcal Electronic energy + Delta-G solvation = -29192.138260 eV Core-core repulsion = 25212.980137 eV Total energy + Delta-G solvation = -3979.158124 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.50328 -39.85142 -39.41461 -37.59777 -34.89200 -33.92968 -32.44543 -31.78290 -30.97420 -30.75622 -29.97512 -28.10477 -26.53439 -24.47760 -24.16681 -23.53097 -22.57221 -21.67259 -21.39577 -19.77178 -19.38203 -18.41441 -17.77540 -16.90916 -16.37282 -16.20160 -16.01617 -15.46219 -15.40401 -14.96500 -14.53548 -14.34526 -14.19238 -13.96503 -13.89514 -13.40257 -13.19121 -12.81046 -12.69121 -12.49223 -12.34490 -12.20177 -11.99011 -11.81674 -11.55425 -11.43621 -11.39985 -11.18968 -10.96696 -10.67925 -10.49315 -10.21036 -10.01112 -9.91659 -9.62332 -9.54953 -9.54432 -8.99739 -8.83283 -8.29121 -7.26510 -5.76925 -3.12370 0.17156 0.80798 1.49106 1.76198 1.78101 3.16345 3.25724 3.37454 3.41753 3.42994 3.45741 4.05202 4.10117 4.34660 4.52051 4.55720 4.59294 4.72060 4.80996 4.83232 4.95209 5.07178 5.14074 5.16323 5.20020 5.39715 5.45955 5.53926 5.61241 5.73117 5.80169 5.82415 5.90098 5.93065 5.98598 6.11716 6.12785 6.17985 6.24380 6.33013 6.53045 6.54535 6.58431 6.73124 6.86351 7.73594 7.85830 7.99120 8.32174 8.42265 9.19757 9.92314 10.11212 11.41159 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012428 B = 0.003121 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.519052 B = 8969.791065 C =10114.532734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.118 4.118 3 H 0.085 0.915 4 C 0.116 3.884 5 N -0.588 5.588 6 C 0.615 3.385 7 O -0.553 6.553 8 C -0.080 4.080 9 C 0.087 3.913 10 N -0.316 5.316 11 C 0.139 3.861 12 C -0.127 4.127 13 C -0.096 4.096 14 C -0.118 4.118 15 C -0.098 4.098 16 C -0.105 4.105 17 N -0.056 5.056 18 N -0.178 5.178 19 C 0.068 3.932 20 C 0.176 3.824 21 H 0.085 0.915 22 N -0.733 5.733 23 C -0.243 4.243 24 H 0.094 0.906 25 C 0.009 3.991 26 N -0.931 5.931 27 Si 0.876 3.124 28 H -0.282 1.282 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.205 0.795 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.131 0.869 40 H 0.137 0.863 41 H 0.143 0.857 42 H 0.104 0.896 43 H 0.061 0.939 44 H 0.363 0.637 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.121 -0.353 14.384 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.138 4.138 3 H 0.104 0.896 4 C -0.007 4.007 5 N -0.319 5.319 6 C 0.401 3.599 7 O -0.432 6.432 8 C -0.218 4.218 9 C -0.066 4.066 10 N -0.094 5.094 11 C 0.047 3.953 12 C -0.148 4.148 13 C -0.115 4.115 14 C -0.137 4.137 15 C -0.116 4.116 16 C -0.124 4.124 17 N -0.034 5.034 18 N -0.052 5.052 19 C -0.058 4.058 20 C 0.064 3.936 21 H 0.102 0.898 22 N -0.375 5.375 23 C -0.372 4.372 24 H 0.111 0.889 25 C -0.187 4.187 26 N -0.578 5.578 27 Si 0.706 3.294 28 H -0.209 1.209 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.222 0.778 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.149 0.851 40 H 0.154 0.846 41 H 0.161 0.839 42 H 0.122 0.878 43 H 0.079 0.921 44 H 0.197 0.803 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 18.353 -0.324 13.289 22.662 hybrid contribution -0.950 -1.017 1.889 2.347 sum 17.403 -1.341 15.179 23.131 Atomic orbital electron populations 1.21606 0.93655 1.02434 1.01270 1.22591 0.96912 0.99020 0.95292 0.89636 1.22018 0.87377 0.94414 0.96852 1.48125 1.28607 1.42538 1.12595 1.16268 0.80494 0.78462 0.84706 1.90771 1.71385 1.65398 1.15617 1.21410 1.02783 1.06578 0.91001 1.23269 0.89571 0.96013 0.97765 1.47684 1.20645 1.31295 1.09820 1.17655 0.88707 0.93266 0.95661 1.20985 1.00179 0.98805 0.94839 1.21032 0.93956 0.96663 0.99864 1.21349 0.99528 0.99813 0.92981 1.21139 0.97019 0.95802 0.97655 1.21040 0.94104 0.98386 0.98918 1.82137 1.11622 1.08475 1.01202 1.74857 1.03646 1.12251 1.14463 1.23645 1.00187 1.02539 0.79412 1.21377 0.88317 0.89208 0.94713 0.89751 1.42717 1.50948 1.34041 1.09781 1.19077 1.21975 1.10099 0.86076 0.88862 1.24622 0.99868 0.98292 0.95900 1.69691 1.43237 1.26448 1.18452 0.86679 0.81184 0.79121 0.82373 1.20896 1.21766 1.20416 0.92226 0.93394 0.91662 0.91729 0.91521 0.77788 0.84744 0.84616 0.85067 0.84564 0.83873 0.87758 0.92093 0.80336 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.76 37.16 0.33 -1.61 16 2 C -0.12 -1.75 3.41 -88.78 -0.30 -2.05 16 3 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 4 C 0.12 1.83 6.46 -3.07 -0.02 1.81 16 5 N -0.59 -10.46 3.33 -171.76 -0.57 -11.03 16 6 C 0.61 11.25 7.85 -12.48 -0.10 11.16 16 7 O -0.55 -10.78 17.19 5.28 0.09 -10.69 16 8 C -0.08 -1.35 6.84 -83.54 -0.57 -1.92 16 9 C 0.09 1.17 10.60 -16.71 -0.18 0.99 16 10 N -0.32 -4.26 3.82 -10.42 -0.04 -4.30 16 11 C 0.14 1.49 6.70 -83.58 -0.56 0.93 16 12 C -0.13 -1.02 9.47 -39.40 -0.37 -1.40 16 13 C -0.10 -0.60 10.04 -39.61 -0.40 -0.99 16 14 C -0.12 -0.70 10.04 -39.55 -0.40 -1.09 16 15 C -0.10 -0.68 10.04 -39.61 -0.40 -1.08 16 16 C -0.10 -1.00 9.68 -39.41 -0.38 -1.39 16 17 N -0.06 -0.91 13.12 60.35 0.79 -0.12 16 18 N -0.18 -3.19 9.39 32.85 0.31 -2.88 16 19 C 0.07 1.21 5.82 -2.53 -0.01 1.20 16 20 C 0.18 3.23 3.47 -65.78 -0.23 3.00 16 21 H 0.08 1.52 8.09 -51.93 -0.42 1.10 16 22 N -0.73 -16.84 4.38 -51.34 -0.22 -17.07 16 23 C -0.24 -6.68 10.44 -15.06 -0.16 -6.84 16 24 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 25 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 26 N -0.93 -29.22 13.97 55.49 0.78 -28.44 16 27 Si 0.88 22.48 27.73 -169.99 -4.71 17.77 16 28 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 30 H -0.28 -6.94 6.52 56.52 0.37 -6.57 16 31 H 0.06 1.01 6.44 -51.93 -0.33 0.68 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 1.13 7.81 -51.93 -0.41 0.72 16 36 H 0.21 1.99 7.13 -52.49 -0.37 1.62 16 37 H 0.13 0.85 6.81 -52.49 -0.36 0.49 16 38 H 0.14 0.50 8.06 -52.48 -0.42 0.07 16 39 H 0.13 0.45 8.06 -52.48 -0.42 0.02 16 40 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 41 H 0.14 1.43 7.73 -52.49 -0.41 1.03 16 42 H 0.10 2.17 6.13 -51.93 -0.32 1.85 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.36 8.47 4.22 -40.82 -0.17 8.30 16 45 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 374.38 15.07 5.64 5.64 Total: -1.00 -34.95 374.38 -7.55 -42.50 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -5.76 Total: 7.74 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -3.85 Total: 0.88 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: 1.04 Total: -63.84 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.71 Total: 17.77 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.95 -7.55 -42.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054842285.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.448 kcal (2) G-P(sol) polarization free energy of solvation -34.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds