Wall clock time and date at job start Sat Apr 11 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.88880 * 2 1 4 4 C 1.54912 * 111.00796 * 123.88215 * 2 1 3 5 5 N 1.47424 * 104.83319 * 155.08170 * 4 2 1 6 6 C 1.34776 * 125.64837 * 155.90740 * 5 4 2 7 7 O 1.21596 * 120.00007 * 0.02562 * 6 5 4 8 8 C 1.47508 * 120.00234 * 180.02562 * 6 5 4 9 9 C 1.36620 * 125.77064 * 180.02562 * 8 6 5 10 10 N 1.35070 * 106.79715 * 180.02562 * 9 8 6 11 11 C 1.40228 * 126.61268 * 179.97438 * 10 9 8 12 12 C 1.38822 * 120.06531 * 359.71562 * 11 10 9 13 13 C 1.38120 * 119.93289 * 179.67950 * 12 11 10 14 14 C 1.38280 * 120.06586 * 0.62285 * 13 12 11 15 15 C 1.38282 * 120.12908 * 359.67801 * 14 13 12 16 16 C 1.38115 * 120.06705 * 0.02562 * 15 14 13 17 17 N 1.40213 * 106.77614 * 359.97438 * 10 9 8 18 18 N 1.28756 * 108.38166 * 359.73091 * 17 10 9 19 19 C 1.47023 * 108.70235 * 335.87439 * 5 4 2 20 20 C 1.54320 * 107.27576 * 1.05739 * 19 5 4 21 21 H 1.08990 * 110.72081 * 263.83328 * 20 19 5 22 22 N 1.46496 * 110.72131 * 140.55218 * 20 19 5 23 23 C 1.36937 * 120.00105 * 91.48188 * 22 20 19 24 24 H 1.08011 * 119.99816 * 359.97438 * 23 22 20 25 25 C 1.38809 * 120.00719 * 179.97438 * 23 22 20 26 26 N 1.31618 * 120.00543 * 179.97438 * 25 23 22 27 27 Si 1.86800 * 119.99702 * 0.02562 * 25 23 22 28 28 H 1.48504 * 109.47242 * 89.99720 * 27 25 23 29 29 H 1.48495 * 109.47349 * 209.99796 * 27 25 23 30 30 H 1.48502 * 109.47132 * 330.00094 * 27 25 23 31 31 H 1.09002 * 109.47153 * 297.56874 * 1 2 3 32 32 H 1.09001 * 109.46832 * 177.57065 * 1 2 3 33 33 H 1.09004 * 109.47261 * 57.57047 * 1 2 3 34 34 H 1.08992 * 110.36777 * 273.92592 * 4 2 1 35 35 H 1.08998 * 110.36145 * 36.24506 * 4 2 1 36 36 H 1.08005 * 126.59989 * 0.02562 * 9 8 6 37 37 H 1.08002 * 120.03737 * 0.02562 * 12 11 10 38 38 H 1.07998 * 119.97320 * 180.34681 * 13 12 11 39 39 H 1.08000 * 119.93915 * 179.69709 * 14 13 12 40 40 H 1.08003 * 119.96570 * 180.02562 * 15 14 13 41 41 H 1.07999 * 120.03838 * 180.02562 * 16 15 14 42 42 H 1.09006 * 109.88301 * 120.47721 * 19 5 4 43 43 H 1.09003 * 109.88253 * 241.48112 * 19 5 4 44 44 H 0.97005 * 120.00849 * 271.48063 * 22 20 19 45 45 H 0.96994 * 120.00255 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0853 -0.8062 1.2006 5 7 3.4272 -1.2428 0.7737 6 6 4.4477 -1.5610 1.5944 7 8 4.3004 -1.4996 2.7999 8 6 5.7435 -1.9838 1.0305 9 6 6.8519 -2.3320 1.7493 10 7 7.8129 -2.6503 0.8552 11 6 9.1203 -3.0665 1.1452 12 6 9.5378 -3.1794 2.4643 13 6 10.8240 -3.5959 2.7469 14 6 11.6995 -3.8880 1.7172 15 6 11.2884 -3.7705 0.4021 16 6 10.0016 -3.3603 0.1134 17 7 7.2514 -2.4845 -0.4188 18 7 6.0315 -2.0975 -0.2776 19 6 3.4674 -1.2743 -0.6957 20 6 2.0861 -0.8083 -1.2020 21 1 1.4468 -1.6636 -1.4204 22 7 2.2286 0.0488 -2.3815 23 6 2.1999 -0.5013 -3.6352 24 1 2.0726 -1.5672 -3.7544 25 6 2.3344 0.3108 -4.7529 26 7 2.3073 -0.2180 -5.9578 27 14 2.5552 2.1542 -4.5468 28 1 4.0026 2.4716 -4.4493 29 1 1.9722 2.8566 -5.7180 30 1 1.8664 2.5999 -3.3089 31 1 -0.3633 0.4756 0.9110 32 1 -0.3633 -1.0268 -0.0436 33 1 -0.3634 0.5511 -0.8674 34 1 2.1560 -0.1713 2.0837 35 1 1.4519 -1.6699 1.4030 36 1 6.9422 -2.3493 2.8255 37 1 8.8558 -2.9471 3.2689 38 1 11.1477 -3.6893 3.7730 39 1 12.7063 -4.2088 1.9405 40 1 11.9744 -3.9997 -0.4000 41 1 9.6809 -3.2691 -0.9138 42 1 4.2426 -0.6000 -1.0599 43 1 3.6678 -2.2892 -1.0393 44 1 2.3433 1.0061 -2.2746 45 1 2.4009 0.3495 -6.7388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054842287.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:42 Heat of formation + Delta-G solvation = 121.330685 kcal Electronic energy + Delta-G solvation = -28691.215876 eV Core-core repulsion = 24711.857575 eV Total energy + Delta-G solvation = -3979.358300 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.57738 -39.89571 -39.45321 -37.58956 -34.95240 -34.13861 -32.54506 -31.83989 -31.07807 -30.91068 -30.04213 -27.85985 -26.62363 -24.53569 -24.26749 -23.61310 -22.40063 -21.72935 -21.09055 -20.13650 -19.80250 -18.46332 -17.51855 -17.01960 -16.45678 -16.29441 -16.06321 -15.53592 -15.49364 -15.01618 -14.64869 -14.42984 -14.17621 -14.01425 -13.54405 -13.47168 -13.21236 -13.13478 -12.63239 -12.56049 -12.42277 -12.34444 -12.12876 -11.70461 -11.61941 -11.48595 -11.40184 -11.29735 -11.03872 -10.68173 -10.59345 -10.31777 -10.11752 -9.95203 -9.70426 -9.59663 -9.58365 -8.95451 -8.89710 -8.36453 -7.32562 -5.77554 -3.14681 0.10721 0.75648 1.41829 1.68382 1.71319 3.06350 3.20054 3.31291 3.37848 3.41231 3.46323 3.98814 4.02350 4.28845 4.44374 4.49920 4.58679 4.66358 4.73547 4.78241 4.90747 5.01743 5.08436 5.10199 5.13303 5.40339 5.46250 5.53585 5.58748 5.73332 5.75273 5.79122 5.84715 5.86108 5.89171 5.93755 6.07094 6.15860 6.19065 6.39461 6.47227 6.50250 6.54334 6.58957 6.85652 7.64470 7.77782 7.97329 8.21233 8.41087 9.17769 9.90005 10.08177 11.40371 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012138 B = 0.002830 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.213302 B = 9892.294846 C =11740.960892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.119 4.119 3 H 0.081 0.919 4 C 0.116 3.884 5 N -0.597 5.597 6 C 0.614 3.386 7 O -0.552 6.552 8 C -0.086 4.086 9 C 0.088 3.912 10 N -0.316 5.316 11 C 0.137 3.863 12 C -0.127 4.127 13 C -0.097 4.097 14 C -0.117 4.117 15 C -0.097 4.097 16 C -0.104 4.104 17 N -0.054 5.054 18 N -0.177 5.177 19 C 0.081 3.919 20 C 0.181 3.819 21 H 0.077 0.923 22 N -0.734 5.734 23 C -0.247 4.247 24 H 0.093 0.907 25 C 0.009 3.991 26 N -0.930 5.930 27 Si 0.882 3.118 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.276 1.276 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.206 0.794 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.132 0.868 40 H 0.137 0.863 41 H 0.144 0.856 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.363 0.637 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.054 -6.512 20.214 26.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.139 4.139 3 H 0.099 0.901 4 C -0.007 4.007 5 N -0.328 5.328 6 C 0.401 3.599 7 O -0.431 6.431 8 C -0.223 4.223 9 C -0.066 4.066 10 N -0.094 5.094 11 C 0.046 3.954 12 C -0.148 4.148 13 C -0.115 4.115 14 C -0.136 4.136 15 C -0.116 4.116 16 C -0.124 4.124 17 N -0.033 5.033 18 N -0.051 5.051 19 C -0.045 4.045 20 C 0.069 3.931 21 H 0.095 0.905 22 N -0.375 5.375 23 C -0.376 4.376 24 H 0.110 0.890 25 C -0.187 4.187 26 N -0.578 5.578 27 Si 0.712 3.288 28 H -0.211 1.211 29 H -0.217 1.217 30 H -0.202 1.202 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.223 0.777 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.150 0.850 40 H 0.155 0.845 41 H 0.162 0.838 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.197 0.803 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.169 -6.723 19.111 25.309 hybrid contribution 0.284 1.361 0.935 1.675 sum 15.453 -5.362 20.046 25.873 Atomic orbital electron populations 1.21607 0.93592 1.02169 1.01710 1.22713 0.96577 0.99678 0.94956 0.90051 1.22310 0.82201 0.98375 0.97791 1.48292 1.11556 1.64182 1.08759 1.16297 0.81099 0.77529 0.85012 1.90775 1.82750 1.56025 1.13526 1.21446 0.97351 1.14165 0.89354 1.23280 0.87552 0.97411 0.98322 1.47735 1.09462 1.44928 1.07325 1.17655 0.80997 1.02016 0.94770 1.20976 0.97867 1.02121 0.93813 1.21035 0.92331 0.98071 1.00100 1.21361 1.00200 0.99369 0.92665 1.21151 0.95076 0.98113 0.97259 1.21056 0.93057 0.98933 0.99367 1.82195 1.02567 1.20453 0.98066 1.74956 1.05842 1.07995 1.16320 1.23365 1.02111 1.02691 0.76320 1.21274 0.92155 0.93706 0.85952 0.90465 1.42683 1.87981 1.04958 1.01893 1.19074 1.42716 0.94628 0.81231 0.88952 1.24651 1.01642 0.97321 0.95087 1.69694 1.56673 1.34437 0.96958 0.86599 0.78041 0.87229 0.76947 1.21052 1.21742 1.20244 0.93106 0.92434 0.91507 0.90616 0.91081 0.77749 0.84739 0.84594 0.85039 0.84532 0.83842 0.90234 0.91113 0.80317 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 9.29 37.16 0.35 -1.43 16 2 C -0.12 -1.80 3.27 -88.47 -0.29 -2.09 16 3 H 0.08 1.27 8.01 -51.93 -0.42 0.85 16 4 C 0.12 1.66 6.38 -2.53 -0.02 1.64 16 5 N -0.60 -9.84 3.33 -171.76 -0.57 -10.41 16 6 C 0.61 10.22 7.85 -12.48 -0.10 10.13 16 7 O -0.55 -9.75 17.12 5.28 0.09 -9.66 16 8 C -0.09 -1.33 6.85 -83.54 -0.57 -1.90 16 9 C 0.09 1.07 10.60 -16.71 -0.18 0.89 16 10 N -0.32 -3.97 3.82 -10.42 -0.04 -4.01 16 11 C 0.14 1.36 6.70 -83.58 -0.56 0.80 16 12 C -0.13 -0.91 9.47 -39.41 -0.37 -1.28 16 13 C -0.10 -0.52 10.04 -39.61 -0.40 -0.92 16 14 C -0.12 -0.62 10.04 -39.55 -0.40 -1.02 16 15 C -0.10 -0.63 10.04 -39.61 -0.40 -1.03 16 16 C -0.10 -0.94 9.68 -39.41 -0.38 -1.32 16 17 N -0.05 -0.86 13.12 60.35 0.79 -0.06 16 18 N -0.18 -3.06 9.77 32.85 0.32 -2.74 16 19 C 0.08 1.47 5.27 -3.07 -0.02 1.45 16 20 C 0.18 3.36 3.08 -66.10 -0.20 3.16 16 21 H 0.08 1.46 7.96 -51.93 -0.41 1.05 16 22 N -0.73 -16.75 4.95 -51.65 -0.26 -17.00 16 23 C -0.25 -6.77 10.44 -15.06 -0.16 -6.92 16 24 H 0.09 2.72 8.06 -52.48 -0.42 2.29 16 25 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 26 N -0.93 -28.96 13.97 55.49 0.78 -28.18 16 27 Si 0.88 21.92 27.74 -169.99 -4.71 17.21 16 28 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 29 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 30 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.04 8.04 -51.93 -0.42 0.62 16 35 H 0.07 0.94 8.04 -51.93 -0.42 0.52 16 36 H 0.21 1.71 7.13 -52.48 -0.37 1.34 16 37 H 0.13 0.71 6.81 -52.49 -0.36 0.35 16 38 H 0.14 0.40 8.06 -52.49 -0.42 -0.03 16 39 H 0.13 0.38 8.06 -52.49 -0.42 -0.05 16 40 H 0.14 0.59 8.06 -52.48 -0.42 0.16 16 41 H 0.14 1.38 7.73 -52.49 -0.41 0.98 16 42 H 0.08 1.61 7.51 -51.93 -0.39 1.22 16 43 H 0.07 1.34 7.72 -51.93 -0.40 0.94 16 44 H 0.36 8.23 5.62 -40.82 -0.23 8.00 16 45 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 378.54 15.07 5.70 5.70 Total: -1.00 -34.24 378.54 -7.63 -41.88 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -5.95 Total: 6.95 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -3.79 Total: 0.33 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: 1.02 Total: -62.41 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.21 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.24 -7.63 -41.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054842287.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.207 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds